NONHSAT060671

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT060671

Source

NONCODE4.0

Same with

,

Classification

sense

Length

5076 nt

Genomic location

chr19+:5074102..5079177

Exon number

1

Exons

5074102..5079177

Genome context

Sequence
000001 gagtgagacc ctAGTCACCC TTCAGCAGGG CAGAGCAGCT TCTAAAATTC TGGGAGCCAG CCTGGCTGTG AACCCCGAGG 000080
000081 AGGGTCAGGA AGGTTGTGGG ATGTGTCAGA TGCCTGCAGC TGCGTGGAAA CACCTTGAGT CCCCTGTGGC CTCTGGCTCA 000160
000161 GGGCCCTGCC CTCCCCTCTG GAAGGCAGCT GGGGGCAGGA TGGGGCACTA ATGGGGAAAG CCTACCCGAC CCCCCTTGTG 000240
000241 TTCCTAGGTG CCCCTCCCAG ACTCTTTTTG GGGCAGGCGA TGTGTTCCAT CGTTGGGACG GTGGAAGGGG TGTGCGAGTA 000320
000321 ATATGGAAAA TGAATAGCTG TGCTCCAAAT GGGCTCACCG GGAGAGTTGT GGAGCCTATG GAGAGAGCAT TAATGTGCTG 000400
000401 GCGCCTTATT GGTGCTAATC ACTTAAAATG TGCGCCTTTG TTAGAGCTTT AATGAGAGCC ACTTAAACTG TGCATTAAAA 000480
000481 AGAGGAACTG CGGAGAGGCC GCCGGCAGGC CGGGCGGCAG GCAGTCATCA TTCTCGTTGA AATGCTTTTA GTGTGGAGAA 000560
000561 AAGTTGCTGG ATTCGGCAAA CCCCTGTACT TTGCAAAACC TCACCGTGGT GTCTGCGTGG CTGGGTGTCA GCAGAAGCAC 000640
000641 CGTGGCCCCG CTCTCCCGCC TCCCCGTGCG CCTGGGCCTC CGTGTGCTGG TGCTCTCGCA CACAGCTGTG CCGCCTTCCA 000720
000721 CCAATGACCC AATGGGTGTG TGTCCCGTCC TGGAGGCGCT TGAGGTCTGT GCAGGCTTCT AGAAGGGCCC TCGGGCTGGC 000800
000801 CGAGGCTGTT GGTCAGTCCT GGCAGGAGGT GGACGCCTGT GGGCTTCCTG TCTGCTGCAG GCGTGACACC CCACACCTCT 000880
000881 GTCGTCCACA TGGCAGTACC TCTCTACCGT CACAGGGCAG GGGACGCAGG CGCAGCCGGG AGAGAGCCGG CAGCCCTGTT 000960
000961 GGGGAGCAGG TCCTAGTCTC CGCAGTCTGT GCTGGAGCCG GGCTTCACCC GGGAGTGCCC CTCCTGGTCC ACATCTGACC 001040
001041 CCCGTCCTCC TGCCTCCTGG GCCGGCCTCC TGCCCGTTGC CACTTGCAGA GTGGGTGGTG GAGCAGGAAG TGCCCGAGAT 001120
001121 GAGGCGGTAA GTCCCCTCCC TGAACTGCTC TTCCTGGCTT GGGCCCGTCT GGCTCCCCTG GTGTTGGTTC CGGGGGCCCG 001200
001201 GCTGCTTCAG GGAAGTCCCT TTGGCACAGG GATTGTGTTG CACACTGAGG GGCGTGGGCC TCAGCAGCTG CTGCCGGGAA 001280
001281 GCCGGGGCAT CCTTACCTTA CCCGCCAAAT GCACGGGTCT TCACCTTGTG ATTTGGAAAC ATTCCTGAAC TGTGCTAATT 001360
001361 AGGAAGCTTG GTTTATTTTT TATTTTTAtt tttatttttg tagagatggg gtcttgtgat gttggccagg ctggtctcca 001440
001441 actcttggcc tcaagagatc catctacctg cctcggcctc ccaaagtgct gagattccct gtgtgagcca ccgcgcccag 001520
001521 ccTGGCTGTG AGGTTTGTGA AGGCGCCAAG CTGCTGGTGT GAGTGCCTGT TTCCCAGGCG CTGCTTTAAG TCAGCTGCAG 001600
001601 AGCGCACTCC TAGACAGACA GCCCCACACA CATGTACGCA GCCCACCATG CTGagcacgg cccaacagga agaggttgtg 001680
001681 agctctgacc acagctcggg gtcaggccca ctctgccact tcctggtggt gctggggccg agggtgagtc agttggtggc 001760
001761 ccgggcctcg atttcctcac ctgtgcagtg acagtgagga cacccgctgt gctgtgtGGG GGGGCAGGTG CACAGTCTCA 001840
001841 TTCATGGCCT TGAAAGCAGG TGCCCAAGGG GGAGGCAGCA CTGCTAACTC CTCACCGTCC CTGGCTGGTC TGGTTCTAGA 001920
001921 ACATCAGCTC CGAGAGGAGA GCGGCCACAC TGCGTCCTTT CCCCAGGGTC GTGCTCTCTC GTTGACTGAG TGACGAGAGC 002000
002001 GGCCACACTG CGTCCTTTCC CCAGGGTCGT GCTCTCTCGT TGACCGAGTG ACGAGAGCGG CCACACTGCA TCCTTTCCCC 002080
002081 AGGGTCGTGC TCTCTCGTTG ACCGAGTGAC GAGAGCGGCC ACACTGCGTC CTTTCCCCAG GGTCGTGCTC TCTCGTTGAC 002160
002161 CGAGTGACGA GAGCGGCCAC ACTGCATCCT TTCCCCAGGG TCGTGCTCTC TCGTTGACTG AGTGACGAGA GCGGCCACAC 002240
002241 TGCATCCTTT CCCCAGGGTC GTGCTCTCTC GTTGACTGAG TGACGAGAGC GGCCACACTG CATCCTTTCC CCAGGGTCGT 002320
002321 GCTCTCTCGT TGACTGAGTG ACGAGAGCGG CCACACTGCG TCCTTTCCCC AGGGTCGTGC TCTCTCGTTG ACTGAGTGAC 002400
002401 GAGAGCGGCC ACACTGCATC CTTTCCCCAG GGTCGTGCTC TCTCGTTGAC CGAGTGATGA GAGCGGCCAC ACTGCGTCCT 002480
002481 TTCCCCAGGG TTGTGCTCTC TCGTTGACCG AGTGACGAGA GCGGCCACAC TGCATCCTTT CCCCAGGGTC GTGCTCTCTC 002560
002561 GTTGAATGAG TGATGAGAGC GGCCACACTG CGTCCTTTCC CCAGGGTTGT GCTCTCTCGT TGACCGAGTG ACGAGGGCGG 002640
002641 CCACCCTGTG TCCTTTCCCC AGGGTCGTGT TGTCTCGTTG ACCGAGTGAC GAGAGCGGCC ACGCTGCGTC CTTTCCCCAG 002720
002721 GGTCATGTTG TCTCGTTGAC CGAGTGACGA GAGCGGCCAC ACCGTGTCCT CTCCCCAGGA TCGTGCTCTC TCATTGACCG 002800
002801 AGCGACTGTG TGGGCTGTGG TCTGGTGGAT TTTGTCTGGG GAGGTCGGAG GAGAAGTCTC TGCATAGCCG TGCCCTGTGA 002880
002881 GGGACCCAAG TGTATGCCAT GGGTGGGCAC CTTGTCACAC AAGTAACCCT GGTCCTTCCC CTGGTGAGGA GGCCCTTGGC 002960
002961 TGCCCCTGCT GCTGGGCAGA GACGAGACCA GGCATCTGCT CACATGGTCA CTGCGCAGAG GCCAGAGGGT GTCACCACTG 003040
003041 TCTGCCACCT GCAGAGCTCA CAGCAGGGCA CTATGGGGCG GCTCCTGCGC ATCTCCTTCC CCCCGACCTG CAGGCACTGG 003120
003121 GGCCCTGAGA ACCAAGGGCA GATCTGGGCC GTGCTCTGTG CTCCCACACG CCCGCTCTCC ATGGGAGGAA AGAGCCAGCC 003200
003201 TGCCCAGAGG GCAGCATCCT CGCTGACCCC GGCCGGCTGT GGCCCAGGAG ACTGACGTCT GTCTTTTCGG CCCTAGGCTT 003280
003281 CTTCCCCGGG AGCTCGCAGG GCTGCGACGC CTTCCTGCGG CATAAGATGA CCCTCATCTC GCCCATCATC CTGAAGAAGT 003360
003361 ACGGGATCCC CTTCAGCCGG GTGCGTACGG GTGGGGCCTG CACGCCTGTG GGTGAAGTGG GTACCGGGTC CAAGCCCAGG 003440
003441 TGGCCGCACA TACCCCAGGA GATAAGCTGT TTAACCCTGG AGAAGTTTCT AGAACAGTGA TTAGCATGCC AGAGGAGGGC 003520
003521 CGCATGGCTC AGCAGTTAGC CTCCAGCTCT TCCACGGGGA AGCGAAGATG GCAGAGCTTG AATCTGGCGG GGTGTTAACC 003600
003601 TCCCCTCCCA AACCAAACCA AAACTTCCTC CTGGGTGTGG CCATCAGAGG CCCCTCCGCA GGGGCTGCAG GGGTGGAAGG 003680
003681 GCAGGGGCAG GCCCTGCTGA CCTGGCAGGA AGCTGCCAAA GAAACAGAGG GCAGGGCCCC TCGTCCCGTG CAAGGTGGGA 003760
003761 ACCTGGTTCC TACCGCCCCA GGCCACACCC TAAGTCTCAG GCACCCCCAC GGCCCATGTC ACCCGGCCGT GGAGAGAACT 003840
003841 GCCTGTTTAG AAGTGACATT TCGGGCTCTC CTGCACCGTG AAGACTGTGA ACTCATTCAG TTCACTGCTT CAGGGGCTGC 003920
003921 TGGTGGAGGC TGTGATGGAG GAGACCTGAG GCCGGGGGGT GGGGCCTCCC TACACCTGAT TTGATGGACA GCTGGGGTTT 004000
004001 GGTGTCCCAG GAGCAGAGCA GGCTGTGCTC AGGGTCCAGC TCAGCAACTG CACCCACTCG AGGCAGTTCC TTCCCCATGG 004080
004081 AGAAGCCTTT GTCCATGGGA GAGTCTAGGC CTGTGTCCCC AGCTCTGTCC AGGTGAGAGG CACGTGCCAA GAACCTGCAA 004160
004161 GGCAGGTCTG GGCCGCAGCC CAGCTCATGA GGTTCCACGG GAAGAGTGAT GTGCAGGCTC GGGAGCGTGC TCTGTGGTGA 004240
004241 GGCCCTGAGT GTCAGCCAGC CGGAAATTGC TTGTGACATT TCAATCAAAC CGCCAAAGCA TCAGCTCACA CATCGGGGAT 004320
004321 CCGCTCTTCC TGGCGGGGCT GCAACCCAGA GGCCGCCTCC CAGCCGCTGC AGGCATTCAT CAGACAGCAC AGATCTCGCT 004400
004401 CGGAGAAGTG CGCATTTCCG GCCTTTCCTC TTCTCCCCCG TCTTCTGGTT GGAACATCAT TCAGTACCAG CAAAACCAGA 004480
004481 CAGATCACGG CATTGCTCAG GGAAGTGAGA AGTACTGATT TTCTGGCTGG TTTGTCTAAA ACCTTCTCCA AAGTGGTGCT 004560
004561 TCCTGGAGGG GGGTGCCCAT CGAAGGGGTG GGCAGGCAGT GAGTGGCCTG GACTCCCAGG TCAGCATCTG TATCGCACTG 004640
004641 CAGTTTATCT GTAAAGTTCC TGAACCTGAG CCAAAGGTGG CTCACCACCA GCCTCAGAGC GGCTGCTGGC ACCATGCATG 004720
004721 GTAGCAGGCG GGGTCCAGGC AGTACGGCTG CGCTCCCCAA CACCGCCAGC TGGTTGCTGG GGCCGGGCGC CAGTTTCTCC 004800
004801 AGAGGCTGCC ACAGTGAAGG CCCCTGTCCC ACTGCAGCGA ACAGCACCCT GTGCCGCCCG GCCTGGGGAC CGTCCTTCAG 004880
004881 CCTCTCAGAC GCCATGGGCT TGAGATGAAC GTCCCTTCCA GACAGCAGCG TGGGTCCCCT CATCTGAATT CCTGGCAGCC 004960
004961 TTCAAACAAG TGACTCCCCA CACTCCCCTT ATAAATCTTT GTAATGGTAT TTACTTCTAG GAGAAAAAGC CGATCAATAG 005040
005041 CAGAGCTTTT TAATAATTAA AAGTGTGTAC TTCTGT
[back to top]

Predicted Small Protein

Name NONHSAT060671_smProtein_4208:4507
Length 100
Molecular weight 10849.2811
Aromaticity 0.0505050505051
Instability index 67.8747474747
Isoelectric point 9.82073974609
Runs 11
Runs residual 0.0225787284611
Runs probability 0.0398660692778
Amino acid sequence MCRLGSVLCGEALSVSQPEIACDISIKPPKHQLTHRGSALPGGAATQRPPPSRCRHSSDS
TDLARRSAHFRPFLFSPVFWLEHHSVPAKPDRSRHCSGK
Secondary structure LEELLEEEEEEEELLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
HHHHHHHHLLLLLLLLLEEEEEELLLLLLLLLLLLLLLL
PRMN -
PiMo -