NONHSAT060671
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT060671 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
5076 nt |
Genomic location |
chr19+:5074102..5079177 |
Exon number |
1 |
Exons |
5074102..5079177 |
Genome context |
|
Sequence |
000001 gagtgagacc ctAGTCACCC TTCAGCAGGG CAGAGCAGCT TCTAAAATTC TGGGAGCCAG CCTGGCTGTG AACCCCGAGG 000080
000081 AGGGTCAGGA AGGTTGTGGG ATGTGTCAGA TGCCTGCAGC TGCGTGGAAA CACCTTGAGT CCCCTGTGGC CTCTGGCTCA 000160 000161 GGGCCCTGCC CTCCCCTCTG GAAGGCAGCT GGGGGCAGGA TGGGGCACTA ATGGGGAAAG CCTACCCGAC CCCCCTTGTG 000240 000241 TTCCTAGGTG CCCCTCCCAG ACTCTTTTTG GGGCAGGCGA TGTGTTCCAT CGTTGGGACG GTGGAAGGGG TGTGCGAGTA 000320 000321 ATATGGAAAA TGAATAGCTG TGCTCCAAAT GGGCTCACCG GGAGAGTTGT GGAGCCTATG GAGAGAGCAT TAATGTGCTG 000400 000401 GCGCCTTATT GGTGCTAATC ACTTAAAATG TGCGCCTTTG TTAGAGCTTT AATGAGAGCC ACTTAAACTG TGCATTAAAA 000480 000481 AGAGGAACTG CGGAGAGGCC GCCGGCAGGC CGGGCGGCAG GCAGTCATCA TTCTCGTTGA AATGCTTTTA GTGTGGAGAA 000560 000561 AAGTTGCTGG ATTCGGCAAA CCCCTGTACT TTGCAAAACC TCACCGTGGT GTCTGCGTGG CTGGGTGTCA GCAGAAGCAC 000640 000641 CGTGGCCCCG CTCTCCCGCC TCCCCGTGCG CCTGGGCCTC CGTGTGCTGG TGCTCTCGCA CACAGCTGTG CCGCCTTCCA 000720 000721 CCAATGACCC AATGGGTGTG TGTCCCGTCC TGGAGGCGCT TGAGGTCTGT GCAGGCTTCT AGAAGGGCCC TCGGGCTGGC 000800 000801 CGAGGCTGTT GGTCAGTCCT GGCAGGAGGT GGACGCCTGT GGGCTTCCTG TCTGCTGCAG GCGTGACACC CCACACCTCT 000880 000881 GTCGTCCACA TGGCAGTACC TCTCTACCGT CACAGGGCAG GGGACGCAGG CGCAGCCGGG AGAGAGCCGG CAGCCCTGTT 000960 000961 GGGGAGCAGG TCCTAGTCTC CGCAGTCTGT GCTGGAGCCG GGCTTCACCC GGGAGTGCCC CTCCTGGTCC ACATCTGACC 001040 001041 CCCGTCCTCC TGCCTCCTGG GCCGGCCTCC TGCCCGTTGC CACTTGCAGA GTGGGTGGTG GAGCAGGAAG TGCCCGAGAT 001120 001121 GAGGCGGTAA GTCCCCTCCC TGAACTGCTC TTCCTGGCTT GGGCCCGTCT GGCTCCCCTG GTGTTGGTTC CGGGGGCCCG 001200 001201 GCTGCTTCAG GGAAGTCCCT TTGGCACAGG GATTGTGTTG CACACTGAGG GGCGTGGGCC TCAGCAGCTG CTGCCGGGAA 001280 001281 GCCGGGGCAT CCTTACCTTA CCCGCCAAAT GCACGGGTCT TCACCTTGTG ATTTGGAAAC ATTCCTGAAC TGTGCTAATT 001360 001361 AGGAAGCTTG GTTTATTTTT TATTTTTAtt tttatttttg tagagatggg gtcttgtgat gttggccagg ctggtctcca 001440 001441 actcttggcc tcaagagatc catctacctg cctcggcctc ccaaagtgct gagattccct gtgtgagcca ccgcgcccag 001520 001521 ccTGGCTGTG AGGTTTGTGA AGGCGCCAAG CTGCTGGTGT GAGTGCCTGT TTCCCAGGCG CTGCTTTAAG TCAGCTGCAG 001600 001601 AGCGCACTCC TAGACAGACA GCCCCACACA CATGTACGCA GCCCACCATG CTGagcacgg cccaacagga agaggttgtg 001680 001681 agctctgacc acagctcggg gtcaggccca ctctgccact tcctggtggt gctggggccg agggtgagtc agttggtggc 001760 001761 ccgggcctcg atttcctcac ctgtgcagtg acagtgagga cacccgctgt gctgtgtGGG GGGGCAGGTG CACAGTCTCA 001840 001841 TTCATGGCCT TGAAAGCAGG TGCCCAAGGG GGAGGCAGCA CTGCTAACTC CTCACCGTCC CTGGCTGGTC TGGTTCTAGA 001920 001921 ACATCAGCTC CGAGAGGAGA GCGGCCACAC TGCGTCCTTT CCCCAGGGTC GTGCTCTCTC GTTGACTGAG TGACGAGAGC 002000 002001 GGCCACACTG CGTCCTTTCC CCAGGGTCGT GCTCTCTCGT TGACCGAGTG ACGAGAGCGG CCACACTGCA TCCTTTCCCC 002080 002081 AGGGTCGTGC TCTCTCGTTG ACCGAGTGAC GAGAGCGGCC ACACTGCGTC CTTTCCCCAG GGTCGTGCTC TCTCGTTGAC 002160 002161 CGAGTGACGA GAGCGGCCAC ACTGCATCCT TTCCCCAGGG TCGTGCTCTC TCGTTGACTG AGTGACGAGA GCGGCCACAC 002240 002241 TGCATCCTTT CCCCAGGGTC GTGCTCTCTC GTTGACTGAG TGACGAGAGC GGCCACACTG CATCCTTTCC CCAGGGTCGT 002320 002321 GCTCTCTCGT TGACTGAGTG ACGAGAGCGG CCACACTGCG TCCTTTCCCC AGGGTCGTGC TCTCTCGTTG ACTGAGTGAC 002400 002401 GAGAGCGGCC ACACTGCATC CTTTCCCCAG GGTCGTGCTC TCTCGTTGAC CGAGTGATGA GAGCGGCCAC ACTGCGTCCT 002480 002481 TTCCCCAGGG TTGTGCTCTC TCGTTGACCG AGTGACGAGA GCGGCCACAC TGCATCCTTT CCCCAGGGTC GTGCTCTCTC 002560 002561 GTTGAATGAG TGATGAGAGC GGCCACACTG CGTCCTTTCC CCAGGGTTGT GCTCTCTCGT TGACCGAGTG ACGAGGGCGG 002640 002641 CCACCCTGTG TCCTTTCCCC AGGGTCGTGT TGTCTCGTTG ACCGAGTGAC GAGAGCGGCC ACGCTGCGTC CTTTCCCCAG 002720 002721 GGTCATGTTG TCTCGTTGAC CGAGTGACGA GAGCGGCCAC ACCGTGTCCT CTCCCCAGGA TCGTGCTCTC TCATTGACCG 002800 002801 AGCGACTGTG TGGGCTGTGG TCTGGTGGAT TTTGTCTGGG GAGGTCGGAG GAGAAGTCTC TGCATAGCCG TGCCCTGTGA 002880 002881 GGGACCCAAG TGTATGCCAT GGGTGGGCAC CTTGTCACAC AAGTAACCCT GGTCCTTCCC CTGGTGAGGA GGCCCTTGGC 002960 002961 TGCCCCTGCT GCTGGGCAGA GACGAGACCA GGCATCTGCT CACATGGTCA CTGCGCAGAG GCCAGAGGGT GTCACCACTG 003040 003041 TCTGCCACCT GCAGAGCTCA CAGCAGGGCA CTATGGGGCG GCTCCTGCGC ATCTCCTTCC CCCCGACCTG CAGGCACTGG 003120 003121 GGCCCTGAGA ACCAAGGGCA GATCTGGGCC GTGCTCTGTG CTCCCACACG CCCGCTCTCC ATGGGAGGAA AGAGCCAGCC 003200 003201 TGCCCAGAGG GCAGCATCCT CGCTGACCCC GGCCGGCTGT GGCCCAGGAG ACTGACGTCT GTCTTTTCGG CCCTAGGCTT 003280 003281 CTTCCCCGGG AGCTCGCAGG GCTGCGACGC CTTCCTGCGG CATAAGATGA CCCTCATCTC GCCCATCATC CTGAAGAAGT 003360 003361 ACGGGATCCC CTTCAGCCGG GTGCGTACGG GTGGGGCCTG CACGCCTGTG GGTGAAGTGG GTACCGGGTC CAAGCCCAGG 003440 003441 TGGCCGCACA TACCCCAGGA GATAAGCTGT TTAACCCTGG AGAAGTTTCT AGAACAGTGA TTAGCATGCC AGAGGAGGGC 003520 003521 CGCATGGCTC AGCAGTTAGC CTCCAGCTCT TCCACGGGGA AGCGAAGATG GCAGAGCTTG AATCTGGCGG GGTGTTAACC 003600 003601 TCCCCTCCCA AACCAAACCA AAACTTCCTC CTGGGTGTGG CCATCAGAGG CCCCTCCGCA GGGGCTGCAG GGGTGGAAGG 003680 003681 GCAGGGGCAG GCCCTGCTGA CCTGGCAGGA AGCTGCCAAA GAAACAGAGG GCAGGGCCCC TCGTCCCGTG CAAGGTGGGA 003760 003761 ACCTGGTTCC TACCGCCCCA GGCCACACCC TAAGTCTCAG GCACCCCCAC GGCCCATGTC ACCCGGCCGT GGAGAGAACT 003840 003841 GCCTGTTTAG AAGTGACATT TCGGGCTCTC CTGCACCGTG AAGACTGTGA ACTCATTCAG TTCACTGCTT CAGGGGCTGC 003920 003921 TGGTGGAGGC TGTGATGGAG GAGACCTGAG GCCGGGGGGT GGGGCCTCCC TACACCTGAT TTGATGGACA GCTGGGGTTT 004000 004001 GGTGTCCCAG GAGCAGAGCA GGCTGTGCTC AGGGTCCAGC TCAGCAACTG CACCCACTCG AGGCAGTTCC TTCCCCATGG 004080 004081 AGAAGCCTTT GTCCATGGGA GAGTCTAGGC CTGTGTCCCC AGCTCTGTCC AGGTGAGAGG CACGTGCCAA GAACCTGCAA 004160 004161 GGCAGGTCTG GGCCGCAGCC CAGCTCATGA GGTTCCACGG GAAGAGTGAT GTGCAGGCTC GGGAGCGTGC TCTGTGGTGA 004240 004241 GGCCCTGAGT GTCAGCCAGC CGGAAATTGC TTGTGACATT TCAATCAAAC CGCCAAAGCA TCAGCTCACA CATCGGGGAT 004320 004321 CCGCTCTTCC TGGCGGGGCT GCAACCCAGA GGCCGCCTCC CAGCCGCTGC AGGCATTCAT CAGACAGCAC AGATCTCGCT 004400 004401 CGGAGAAGTG CGCATTTCCG GCCTTTCCTC TTCTCCCCCG TCTTCTGGTT GGAACATCAT TCAGTACCAG CAAAACCAGA 004480 004481 CAGATCACGG CATTGCTCAG GGAAGTGAGA AGTACTGATT TTCTGGCTGG TTTGTCTAAA ACCTTCTCCA AAGTGGTGCT 004560 004561 TCCTGGAGGG GGGTGCCCAT CGAAGGGGTG GGCAGGCAGT GAGTGGCCTG GACTCCCAGG TCAGCATCTG TATCGCACTG 004640 004641 CAGTTTATCT GTAAAGTTCC TGAACCTGAG CCAAAGGTGG CTCACCACCA GCCTCAGAGC GGCTGCTGGC ACCATGCATG 004720 004721 GTAGCAGGCG GGGTCCAGGC AGTACGGCTG CGCTCCCCAA CACCGCCAGC TGGTTGCTGG GGCCGGGCGC CAGTTTCTCC 004800 004801 AGAGGCTGCC ACAGTGAAGG CCCCTGTCCC ACTGCAGCGA ACAGCACCCT GTGCCGCCCG GCCTGGGGAC CGTCCTTCAG 004880 004881 CCTCTCAGAC GCCATGGGCT TGAGATGAAC GTCCCTTCCA GACAGCAGCG TGGGTCCCCT CATCTGAATT CCTGGCAGCC 004960 004961 TTCAAACAAG TGACTCCCCA CACTCCCCTT ATAAATCTTT GTAATGGTAT TTACTTCTAG GAGAAAAAGC CGATCAATAG 005040 005041 CAGAGCTTTT TAATAATTAA AAGTGTGTAC TTCTGT |
Predicted Small Protein
Name | NONHSAT060671_smProtein_4208:4507 |
Length | 100 |
Molecular weight | 10849.2811 |
Aromaticity | 0.0505050505051 |
Instability index | 67.8747474747 |
Isoelectric point | 9.82073974609 |
Runs | 11 |
Runs residual | 0.0225787284611 |
Runs probability | 0.0398660692778 |
Amino acid sequence | MCRLGSVLCGEALSVSQPEIACDISIKPPKHQLTHRGSALPGGAATQRPPPSRCRHSSDS TDLARRSAHFRPFLFSPVFWLEHHSVPAKPDRSRHCSGK |
Secondary structure | LEELLEEEEEEEELLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL HHHHHHHHLLLLLLLLLEEEEEELLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |