NONHSAT061031

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT061031

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1041 nt

Genomic location

chr19-:10228774..10230596

Exon number

5

Exons

10228774..10229403,10229544..10229742,10229764..10229847,10230330..10230376,10230516..10230596

Genome context

Sequence
000001 TCGTTTTCGC CCGCTTCCGC TCTCTGGCCG GGCTTGGGCT GCGTGGAGAA TACTTTTTGC GATGCCTACT GGAGACTTTG 000080
000081 ATTCGAAGCC CAGTTGGGCC GACCAGGTGG AGGAGGAGGG GGAGGACGAC AAATGTGTCA CCAGCGAGCT CCTCAAGGGG 000160
000161 ATCCCTCTGG CCACAGGTGA CACCAGCCCA GAGCCAGAGC TACTGCCGGG AGGTGAGTGA GGACTGCCAC TCGGTGTCCG 000240
000241 GGCTGCCTCT CCCTCCAGCC CTGCCGCTCC TGATCCCCAT GACCCAGGGC TCAGTCTTTC TCTGTTTTTC CCCTTCTGCC 000320
000321 AGCTCCACTG CCGCCTCCCA AGGAGGTCAT CAACGGAAAC ATAAAGACAG TGACAGAGTA CAAGATAGAT GAGGATGGCA 000400
000401 AGAAGTTCAA GATTGTCCGC ACCTTCAGGA TTGAGACCCG GAAGGCTTCA AAGGCTGTCG CAAGGAGGAA GGTGAGGCTC 000480
000481 TTCTTCCCCA GGGCTAACCT AGAGGAATTG GAAAACCGTG CTCCCGGACT TTGTGTTTAG AGATGGGGCT TAACtctttt 000560
000561 tttttttttt ttttgagaca gagtgttgct ctgtccccca ggctgaagtg cagtggcacg atctcgactc actgcaacct 000640
000641 ccgcctcctg ggttcaagtg attctcctgc ctcagcctcc cgagtagctg gggttacagg catgtgccac cacgccagct 000720
000721 aatttttgta cttttagtag agacggggtt ttgccatgtt ggccaggctg gtctcgaact cctgacctca catgatctgc 000800
000801 gcacctaggc ctcccaaagt gttgggatta caggtgtgag ccatcgcacc cggccAGGCT TACCTCTTTG TACCTATTTT 000880
000881 GTTGAAGCTG AACTGAGGCC TGGGGTGCTT GCACTGTCTT GGGGCCCTGA AAAGTCCAAG GCACAGCAGT CGATAAATAG 000960
000961 CAACTAAATA AATGATGATA AATATCTAAT CAAAGTTCGA TGATAGATAT CAAATTATAT TAATAAATAT CAAATAACAT 001040
001041 C
[back to top]

Predicted Small Protein

Name NONHSAT061031_smProtein_542:721
Length 60
Molecular weight 6260.152
Aromaticity 0.0847457627119
Instability index 53.5152542373
Isoelectric point 9.80035400391
Runs 11
Runs residual 0.0419841393251
Runs probability 0.0426201602672
Amino acid sequence MGLNSFFFFFLRQSVALSPRLKCSGTISTHCNLRLLGSSDSPASASRVAGVTGMCHHAS
Secondary structure LLLLHHHHHHHHHHHHLLLLLLLLLEEEELLLLEEELLLLLLLLHHHHHLLLLEEELLL
PRMN -
PiMo -