NONHSAT061225
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT061225 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3246 nt |
Genomic location |
chr19+:12203151..12211603 |
Exon number |
4 |
Exons |
12203151..12203285,12204651..12204710,12204881..12204999,12208672..12211603 |
Genome context |
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Sequence |
000001 CTTTCTGGCT CTTGGAACGC TCGGCTCTGA GAGGCTCCAG GTTTCTCCGC CAGAGCTCCT GTCGCTCTGT CAGTTGCGCT 000080
000081 GTGTTCCTCT CTAGTCACAA GAGCCTTGGG GAAGACAGTT GGAAGCTCAG ACATGAGAAA TATGATTCCA CAGGACAATG 000160 000161 AAAACCCACC CCAACAGGGT GAAGCAAATC AAAATgattt cgctcttgtt gcccaggctg gagtacagtg gctcgatctc 000240 000241 ggcccacagc tgcctctgct tcctgggttc aagcaattct tctgcctcag cctcctgagt agctgtggtt acagttggag 000320 000321 tcttgctctg tcacccaggc tggagtgcag tggcgcaatc tcagcttacg gcaagctccg cctcccgggt tcatgccatt 000400 000401 ctcctgcctc agcctcccga gtagctagga ctacaggcgc ccgccaccac acccggctaa tttttgtatt tttagtagag 000480 000481 acaaggtttc accgtgttag ccaggatggt ctcgatctct tgacctcgtg atctgcccac ctcggtctcc caaagtgctg 000560 000561 ggatgacagg cgtgagccac catgtccagc Tgtaacttag aactatttaa agaggcaaag gcataggaga ataaaggaag 000640 000641 gaagaagtaa ctcgtggaat gttgcgaaag gaaaaacacg tttaaggaag aggaacaggc tatgacttaa tgtttgcttg 000720 000721 gaccagtata agcatgccag ggcaagtatt taggctaact tgtgggagtt aagaatataa agttgccaag accagcttgg 000800 000801 ctggggagac gctaacccag cagcgctaga ggaattaaag acaccacaca caccaaaata tagaggtgtg aagggggaaa 000880 000881 tcaggggtct cacagccttc agagctgaga gtcttgaaca gagatttatc cacatattta ttaacagcaa accagtcatt 000960 000961 agcattgttt ctatagatat taaattaact aaaagtatcc cttatgggaa acaaagggat gagccgaatt aaaggaatag 001040 001041 gttgggctag ttaactgcag caggagcatg tccttaaggc acagatagct catgctacta tttgtggctt aagaatgctt 001120 001121 ttaagcggtt ttccgccctg ggcgggccag gtgttccttg ccctcattct ggtaaactca caaccttcca gtgtgggtgt 001200 001201 tagggccatt atgaacatgt tacagtgctg cagagatttt gtttatggcc agttttgggg ccagtttatg gccagatttt 001280 001281 ggggggcctg ctcccaacat gtcccctttc tttgatttgc aaatcaataa aagcaagggc agctttgtca cagtgagcta 001360 001361 cttctcgcag gagtcaggat ccacgtctgc agactataca aggacaacac agattaaaag cacagtcatc attgaaatca 001440 001441 cagaacttcc aagtgttttt atccattttc agctcctttt aagcactcca gttctggcat taaggtcagc tgtgcctggg 001520 001521 atgctttaaa tatttgttct tttaatttta aatccttata ttaagctcct acaatgcacc atatcatttg aggttgaggt 001600 001601 gccactatac cgccatggtt ccagataata ggaacttttg ccatacttct tatcatttct gccatctgac cgttttgttc 001680 001681 agatcagctg aacatagtgt ggccgtggca tgtagactga gaggtgcagt ttaagctaaa catcccctta ggggaccaat 001760 001761 taataatgat tccatagaaa ttgttgtgca gcacctctgc ctgttccgca atgcaatctt cctaaacaag tacgttcatt 001840 001841 ttttctaact gggtccgatc ctgtttacaa ataggttttt gagggcggta tgcctcaatt ataggagcag atttattacg 001920 001921 gtaaatactg agattagaaa gcatgtgtaa ctgtgtcata gagtgattgc atccaggcat tattaccagt caagattgat 002000 002001 aaatatgccc agtaagtata atcattctct gtgtcagccc ttattgaagg aatactcaag gtagtggtga taactgctgt 002080 002081 catagctacc attaaattat tcattgtgac tggttgtccc gctttcctca ggttttcttc cgccatctgt gacagcttct 002160 002161 tgatctgtcc ccaggtgggt ggctgtgttc gatgggtgtt gctcgtgaca gttggggtcc tcctcagcgt cagtctctac 002240 002241 atggctgcaa ccggggagtc cttgggatcc tctcagagtc tcttcctcag catctggctc atgataaggt ttcaggtgtc 002320 002321 ttgatagtac ccaaatcggc tattgatttt ggtctagaga aacacaagca taatctctac tccaagttat tattttacct 002400 002401 atttcccaac tttttgttac tgaatatctc caccaaatca gttgttctgc ttctttcttt gcagctggtt tctgtagatg 002480 002481 ctgttcagtt gctgataaca tctggccttt gggcaggttc aaaacattta atgttaataa tgctacgttc agttgtatct 002560 002561 gtggggttcc atattctcta tttccccctt tctgcttttg caactgctgt tttagggaaa gattcattct ttccactatg 002640 002641 gcttgtcctt gaattgtatg ggatatcagt aatgtgttta atattccaca tagagaaaaa tgtagctaga gcttggctag 002720 002721 tatagcctgg ggcattatct gttttaatag aagctggaat gcccatcact gcaaaacact gcaaaagatg acgtttaaca 002800 002801 caagcagaag actctcctgt tggcatgtag cccagacaaa gtgagaaaag gtgtccacac atacatgtgg gcaccaaacg 002880 002881 agggaatatg tgtgacatct atttgccaaa gagagttagg ttccaatcct tgaggattaa atcctcctgt aaaagatgag 002960 002961 gaatgtacca tttggcaagt tggcatcgct ggataatagc tttagcttct ttccaggtaa tgctgtatct gtgtttgagg 003040 003041 ccagaggcat taacatgggt taaattgtga aagtgtctag cattagatat tgcattagca actaggcgat cagccatttg 003120 003121 attcccttca atcaaaggtc ttggaagagg tgtatgagcc ctaatgtgag tgatgtaaaa agggtgcatt ctacttctaa 003200 003201 ctgctgtttg caactgggta aataaagtaa tcagttgttc atctgt |
Predicted Small Protein
Name | NONHSAT061225_smProtein_1244:1528 |
Length | 95 |
Molecular weight | 10177.5488 |
Aromaticity | 0.117021276596 |
Instability index | 60.0563829787 |
Isoelectric point | 5.56414794922 |
Runs | 11 |
Runs residual | 0.0117946345976 |
Runs probability | 0.0724414253826 |
Amino acid sequence | MASFGASLWPDFGGPAPNMSPFFDLQINKSKGSFVTVSYFSQESGSTSADYTRTTQIKST VIIEITELPSVFIHFQLLLSTPVLALRSAVPGML |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLEEEEEEEELLLLLLLLLEEEEEEEEEE EEEEEELLLLEEEEEELLLLLLHHHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo ooooooTTTTTTTTTTTTTTTTTTiiiiiiiiii |