NONHSAT061380

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT061380

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2095 nt

Genomic location

chr19-:14207183..14209277

Exon number

1

Exons

14207183..14209277

Genome context

Sequence
000001 acacacatat ctacatacat acagaggtga ggtcttgcct atattgccca ggctggtctc gaactcctgg gctcaagcga 000080
000081 tcttcccacc tcgacccccc aaaatgctgg gattacaggg gtgagccacc gcaccgggcc GAATccctct cttgacacgt 000160
000161 cacctcccca ccaaaggcag ttgtcctttc tgacttcaaa caccgtgcct ttgttttgtc tgggcgtgga catgatataa 000240
000241 atggaatcat tcatgttctt ttgtgtcttc ttttgcttaa cataatcagt ttgaaatgca gccacattgt tgagtggatg 000320
000321 catgggctgt cctgttggcg gtggtggtgg tgagtggaat tccattgtat gactatagct cagtctgtga ttccattttc 000400
000401 ctgtggatgg acccacaggc tgtttcccat gtcgggctat ctaagaatCA GGTGCCTTGC GTTTCTGACG GCTGGACTGG 000480
000481 AGGTGTCTTC CTCTGGGGTA GGCTCTGCAG GGCCACCTGC TGGACCATTT TGGGGCATGA CCACTGACGT TCACCTCCCC 000560
000561 ATTTGTCCCC ATCAGTGAGC CCCATGCCCG TTTCTACGCG GCCCAGATCG TCCTGACCTT TGAGTATCTG CACTCGCTGG 000640
000641 ATCTCATCTA CAGGGACCTG AAGCCGGAGA ATCTGCTCAT TGACCAGCAG GGCTACATTC AGGTGCCCAC CAGGCCGGGC 000720
000721 GAGGGGCAGC CCTGGGGAAG CCGTGGCCTG GACCCTTCCT CCCTGCCAAC TGCCTGTTCT TGTGCCCACA GGTGACAGAC 000800
000801 TTCGGTTTCG CCAAGCGCGT GAAGGGCCGC ACTTGGACCT TGTGCGGCAC CCCTGAGTAC CTGGCCCCTG AGATTATCCT 000880
000881 GAGCAAAGTA GGAGCCTCCC CAGCCCTCCC CTTCCCCTGA GGCCGGCTCT GCTCTCCTGC TCTCGCCTCC TCCTCACCCT 000960
000961 GTGCCCCCCC ATCTTGCTCC AGGGCTACAA CAAGGCCGTG GACTGGTGGG CCCTGGGGGT TCTTATCTAT GAAATGGCCG 001040
001041 CTGGCTACCC GCCCTTCTTC GCAGACCAGC CCATCCAGAT CTATGAGAAG ATCGTCTCTG GGAAGGTGAG GTCCGGATGt 001120
001121 ggggacacag ccctggaaga aacagaccgt tccctgctca cccatcctat tccctgggga gccctgcttg ttgtcagaat 001200
001201 aatctagaAG TTCCTTAAGT CAGGCCAGGT GGTGAAGCTG GACGCGCCGG CCACACTGAG GCCAACACCT CAAGCCCCCT 001280
001281 TGCTGTCCAG CCCCAACCCC GCGGTTCCAG AATCCCATGG GCTTCCAAAA TCCCGAGCCT CACGGGAACA TCTTGGCCAC 001360
001361 AGAACACAAA CCGCCCTGCC AGACGACCCT CCTTTTCGCT CCtcatccca gttagtgtga gttttcgcaa attccaaggc 001440
001441 agaaaaacga atgtatttgg ttcctgttcc caggtgctgt ccATAGCCTC ACCCAGGATT GCCCTCACTT AGCATTTATA 001520
001521 GCCCATGCTT CCTCTCCCAA ACCCAGACTT GCCTAACTCT GAGGGTTCAG ATGAGGGGTG GTGAAGCCAT CTCAGCTCAC 001600
001601 ATCTATGACA Ggtgcaaagt gcccaccatc caccaggccc cagaatcccc atcagtcaca ccctgagata gtggcaccct 001680
001681 ctgtaggaga ggtgaggaaa caggctggga aaagggatgt gtcttggcca agatcacact ttggtgagta gGTAATCACC 001760
001761 GTAGGCAATC ATTGTAGGCA CTGATGGCCG GAGAGAGGTT GGGGACCCCA CCTCTGCCCT CAGCTCAACC ACCTTGCTGG 001840
001841 GAAGACCCGA CCATCCCCCG ACTTGGTCCA GCATCTCCTA CACAGGAGCT TTTGGTTGGC CCGGAGTCAt gacactgtgg 001920
001921 tgggagcacc ctcaggctca gcctgggccc cagtcccagc tctgccaccg actggctttg aaactttggg gctgggtaca 002000
002001 atggctcaca cctgtaatgc cagcaccttg ggaagtggag gcttgaggcc aggagttcca gaccagcctg ggcaacatag 002080
002081 ccagacccca tctct
[back to top]

Predicted Small Protein

Name NONHSAT061380_smProtein_368:577
Length 70
Molecular weight 7360.5219
Aromaticity 0.101449275362
Instability index 51.3217391304
Isoelectric point 7.79705810547
Runs 9
Runs residual 0.0088965418281
Runs probability 0.034034034034
Amino acid sequence MTIAQSVIPFSCGWTHRLFPMSGYLRIRCLAFLTAGLEVSSSGVGSAGPPAGPFWGMTTD
VHLPICPHQ
Secondary structure LEEEEEEEELLLLLLLEEELLLHHHHHHHHHHHHLLEEEELLLLLLLLLLLLLLLLLLLL
LLLLLLLLL
PRMN -
PiMo -