NONHSAT062803
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT062803 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
2149 nt |
Genomic location |
chr19+:16698072..16700220 |
Exon number |
1 |
Exons |
16698072..16700220 |
Genome context |
|
Sequence |
000001 AGCTGGGAGC CAAACTGCCT CTGGTGCAAG TCAGTACAAG AGGCGGCACC TGCATCCCCA CCCCACCTCC ACCCCAAGAC 000080
000081 CCCAGCTCTG CCCTCCCTCT CAGCTCTGGA AAGCGCAGCC CTGAGGGGTG CTGCTGTGCT TACCCTCAGG CGGGCCCCAC 000160 000161 CCTGCACTCT CCGCTCAGCC TCATGGGGCT GGTGCAGGTC CACCAGGCTC TGCCCAGTGA AGGCACCTTC CTCTGAGGGG 000240 000241 ACCTCATGGG AGCCTCAAAC CCCAGGGGCA AAGCCTCAAG TTCACAGCTT CTCAGAGGAA GAATGACACT GGGAGGAACA 000320 000321 ATGACGGGAA GGTGCATGTC TCGGCCACAG CCACCAAGCT CACCACTTGA AAAGCACTTC CTGCTGGGGC CCTCCTGCTA 000400 000401 CTCCCAGGAG CAGCCGGCCA CCTGAGTGGT CTGTCATGTC CATGTGGCCC TCCCTGTCCT GCAGCCACAG CTCCTGTAAT 000480 000481 GCTTGGGCAA GTATGCAATT GCATGCTACA ACTCAGCCCG GGGGACGGGA AATGCCACCT GAGTACAGGC AGCACGCGGA 000560 000561 GCCCTGACTG AACCCCATGA GCAACTCAGA AAGAGGAAGC CCAGGGCTTG GGGCAGAAGT AGGAGCTCCA TCAGTAGGCA 000640 000641 TGCCTGACTT CTGCAGCGAG GGAAACTTGC AGATGAAGCC AGGAGGCAGG CAGCGCTGCT CTCCACAGCC ACTGCCCCCA 000720 000721 CAGCGTCCTT CCCTCCCACT TTCTGTTTTT AGCAGCTCTT CCCAACCAAA CTACCAACCT AGACTCTCCT GACCACTGCT 000800 000801 TCAGGTCTGC AGAACTTACG ATTCTTACTG CCATTTGGCC CTTTGTGAAG GCACAAGAGC TCTCAAAGCT CATCTGTAAA 000880 000881 TTGACTCGTT GCTACGCGGA TAGAACTGGA GCAGTGGGAA GCCAAGCGGA GTCCTGGTGA TAGCACGCTG GGTGGGGGCT 000960 000961 TCTCCCTCTC AGCCTCTCTC TTCTAGGAGC AGCTGATAAG AATGCCAGCT GCAGAAGACT GGAAATGACC CAACATCCTC 001040 001041 GGGGGAAACA CACACACAGT GCTCGGCCCA TATATGTTCC GCCAAAGACA GAGCCCAAAT AAGAACGAGC CAGCTTTTCA 001120 001121 GGAATCAACA GGGAACAACC TTCAAGAGAC TGCCAAGCAC AGAGATGCAC ACAACAGCGC ACCCTGTGCC GCCGCCTGGA 001200 001201 AGATCCTAGC TGAGGCTGGG CAGACAAGGA CCTGATGGTT GAGCCGCGCA TAGCTGTAGC AGGGGACCGC ACCTGGCCTC 001280 001281 CAGCACTGAC GCAAGCAAGA CCTATCACTG ACTGGAGCCC AGTTCCTCCT CTGAGAGCAT GAGAAAACCA CAAGATGGTG 001360 001361 TCTGTAGAGC ATGAATGGTG TGCTGGAGAC CACGCCCCCA GGGGCCAGGC CACGAGGACC CGCACACTGC ACTTTCTGCT 001440 001441 GGGCTGCTCT GTGGTCTGTA AGATCCATTC AGGCAGGGCA GTGCCCAGCA CGGTGCCTGG AGGCAGCCTC AGAGGCCCAT 001520 001521 TGAGAGAGGA AGCCGAAGGA GAGCAGCCCC CCGCCTGCCT GTCCAATTGG GCTGCTGTAA GATCCTGAGA ACTAGTGACC 001600 001601 TTCTAGAATT CCCCGAGACA AGTCATCAAA TGCTCTCTGA GCACCGACTG CACACAGGTG CTCTACCAAA CTCTGGGCCC 001680 001681 GCTGGATGCT GGGAGGGGGC GTTAGGATCC CTGTGTACTG ACCCGGAGGA GTAGACAGAG ACAGCCAAGG TCAAGAACAG 001760 001761 AAGCAACAGA TAAAATGCCA CCACTGAGGC TCTCACCCAG GCTGCCAGGA AACCCCAGGG GAGGACTACA CTTGGCTCAG 001840 001841 GTCCAGGGCC ACCCCTTCCC CCACAGCTCC TGGGCTCTGT GTGGAGCTGG AGGGACAGGA GTGGGCACAG GGGCCTTCTC 001920 001921 ATTGGGCATT CCTGCAACGA GGGCCACGGT GCAGAGAACC AAGGACACTG TCACCCAAGG AAGAGTCTGG TGACTCTGTG 002000 002001 GATCCCATGG TAACCACCAT TTAAGGATGG ACACTCACGC TATGATCCAG CAATTCCACT CCAAGCAGCA CCTACAGAAA 002080 002081 TGCACTCAGA GCAGCTGTAT CAGAACAGCC CCAACTGAAA ACAGCCCACG CAGCCACCAA CAGAACACC |
Predicted Small Protein
Name | NONHSAT062803_smProtein_245:424 |
Length | 60 |
Molecular weight | 6278.148 |
Aromaticity | 0.0338983050847 |
Instability index | 80.2288135593 |
Isoelectric point | 10.2998657227 |
Runs | 9 |
Runs residual | 0.0080858342404 |
Runs probability | 0.0483817150485 |
Amino acid sequence | MGASNPRGKASSSQLLRGRMTLGGTMTGRCMSRPQPPSSPLEKHFLLGPSCYSQEQPAT |
Secondary structure | LLLLLLLLLLLHHHHHLLEEEELLLEEEEEELLLLLLLLLLLLEEELLLLLLLLLLLLL |
PRMN | - |
PiMo | - |