NONHSAT062803

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT062803

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

2149 nt

Genomic location

chr19+:16698072..16700220

Exon number

1

Exons

16698072..16700220

Genome context

Sequence
000001 AGCTGGGAGC CAAACTGCCT CTGGTGCAAG TCAGTACAAG AGGCGGCACC TGCATCCCCA CCCCACCTCC ACCCCAAGAC 000080
000081 CCCAGCTCTG CCCTCCCTCT CAGCTCTGGA AAGCGCAGCC CTGAGGGGTG CTGCTGTGCT TACCCTCAGG CGGGCCCCAC 000160
000161 CCTGCACTCT CCGCTCAGCC TCATGGGGCT GGTGCAGGTC CACCAGGCTC TGCCCAGTGA AGGCACCTTC CTCTGAGGGG 000240
000241 ACCTCATGGG AGCCTCAAAC CCCAGGGGCA AAGCCTCAAG TTCACAGCTT CTCAGAGGAA GAATGACACT GGGAGGAACA 000320
000321 ATGACGGGAA GGTGCATGTC TCGGCCACAG CCACCAAGCT CACCACTTGA AAAGCACTTC CTGCTGGGGC CCTCCTGCTA 000400
000401 CTCCCAGGAG CAGCCGGCCA CCTGAGTGGT CTGTCATGTC CATGTGGCCC TCCCTGTCCT GCAGCCACAG CTCCTGTAAT 000480
000481 GCTTGGGCAA GTATGCAATT GCATGCTACA ACTCAGCCCG GGGGACGGGA AATGCCACCT GAGTACAGGC AGCACGCGGA 000560
000561 GCCCTGACTG AACCCCATGA GCAACTCAGA AAGAGGAAGC CCAGGGCTTG GGGCAGAAGT AGGAGCTCCA TCAGTAGGCA 000640
000641 TGCCTGACTT CTGCAGCGAG GGAAACTTGC AGATGAAGCC AGGAGGCAGG CAGCGCTGCT CTCCACAGCC ACTGCCCCCA 000720
000721 CAGCGTCCTT CCCTCCCACT TTCTGTTTTT AGCAGCTCTT CCCAACCAAA CTACCAACCT AGACTCTCCT GACCACTGCT 000800
000801 TCAGGTCTGC AGAACTTACG ATTCTTACTG CCATTTGGCC CTTTGTGAAG GCACAAGAGC TCTCAAAGCT CATCTGTAAA 000880
000881 TTGACTCGTT GCTACGCGGA TAGAACTGGA GCAGTGGGAA GCCAAGCGGA GTCCTGGTGA TAGCACGCTG GGTGGGGGCT 000960
000961 TCTCCCTCTC AGCCTCTCTC TTCTAGGAGC AGCTGATAAG AATGCCAGCT GCAGAAGACT GGAAATGACC CAACATCCTC 001040
001041 GGGGGAAACA CACACACAGT GCTCGGCCCA TATATGTTCC GCCAAAGACA GAGCCCAAAT AAGAACGAGC CAGCTTTTCA 001120
001121 GGAATCAACA GGGAACAACC TTCAAGAGAC TGCCAAGCAC AGAGATGCAC ACAACAGCGC ACCCTGTGCC GCCGCCTGGA 001200
001201 AGATCCTAGC TGAGGCTGGG CAGACAAGGA CCTGATGGTT GAGCCGCGCA TAGCTGTAGC AGGGGACCGC ACCTGGCCTC 001280
001281 CAGCACTGAC GCAAGCAAGA CCTATCACTG ACTGGAGCCC AGTTCCTCCT CTGAGAGCAT GAGAAAACCA CAAGATGGTG 001360
001361 TCTGTAGAGC ATGAATGGTG TGCTGGAGAC CACGCCCCCA GGGGCCAGGC CACGAGGACC CGCACACTGC ACTTTCTGCT 001440
001441 GGGCTGCTCT GTGGTCTGTA AGATCCATTC AGGCAGGGCA GTGCCCAGCA CGGTGCCTGG AGGCAGCCTC AGAGGCCCAT 001520
001521 TGAGAGAGGA AGCCGAAGGA GAGCAGCCCC CCGCCTGCCT GTCCAATTGG GCTGCTGTAA GATCCTGAGA ACTAGTGACC 001600
001601 TTCTAGAATT CCCCGAGACA AGTCATCAAA TGCTCTCTGA GCACCGACTG CACACAGGTG CTCTACCAAA CTCTGGGCCC 001680
001681 GCTGGATGCT GGGAGGGGGC GTTAGGATCC CTGTGTACTG ACCCGGAGGA GTAGACAGAG ACAGCCAAGG TCAAGAACAG 001760
001761 AAGCAACAGA TAAAATGCCA CCACTGAGGC TCTCACCCAG GCTGCCAGGA AACCCCAGGG GAGGACTACA CTTGGCTCAG 001840
001841 GTCCAGGGCC ACCCCTTCCC CCACAGCTCC TGGGCTCTGT GTGGAGCTGG AGGGACAGGA GTGGGCACAG GGGCCTTCTC 001920
001921 ATTGGGCATT CCTGCAACGA GGGCCACGGT GCAGAGAACC AAGGACACTG TCACCCAAGG AAGAGTCTGG TGACTCTGTG 002000
002001 GATCCCATGG TAACCACCAT TTAAGGATGG ACACTCACGC TATGATCCAG CAATTCCACT CCAAGCAGCA CCTACAGAAA 002080
002081 TGCACTCAGA GCAGCTGTAT CAGAACAGCC CCAACTGAAA ACAGCCCACG CAGCCACCAA CAGAACACC
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Predicted Small Protein

Name NONHSAT062803_smProtein_245:424
Length 60
Molecular weight 6278.148
Aromaticity 0.0338983050847
Instability index 80.2288135593
Isoelectric point 10.2998657227
Runs 9
Runs residual 0.0080858342404
Runs probability 0.0483817150485
Amino acid sequence MGASNPRGKASSSQLLRGRMTLGGTMTGRCMSRPQPPSSPLEKHFLLGPSCYSQEQPAT
Secondary structure LLLLLLLLLLLHHHHHLLEEEELLLEEEEEELLLLLLLLLLLLEEELLLLLLLLLLLLL
PRMN -
PiMo -