NONHSAT063653

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT063653

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1446 nt

Genomic location

chr19-:20515776..20607775

Exon number

3

Exons

20515776..20516941,20519759..20519854,20607592..20607775

Genome context

Sequence
000001 GAGCGAAGAG GACGGCTTTC TGGTATGGCG CGGCCTTTGT CTCTTGCTGC CGCTGGAGCT CCAGATCTCT TGTTCACTGC 000080
000081 TCTGTGTTCT CTGCTCATAG AGGCCCAGCC TCTGAGGCCC TTTGACCTGC AGGTATTGGG AGATCCACAG CCAAGAGCCA 000160
000161 GGACCCCCTA GAAGTCTAGA AATGGTATTG TTCTCTCCAA GCCAGAACTG ATCACCTGTC TGGAGCAAGG AAAAAAACCT 000240
000241 CTGACCGTGA AGAGACATGA GATGATTGCC AAACCCCCAG agatggagtc tcgctctgtc acctagacgg aagtgcagtg 000320
000321 gtgcgatctc agctcactgc aacctctgcc ttttgggttc aagaaattct cctgcttcag cctctctagt aactcggatt 000400
000401 acaggtgccc gccaaaacgc tcagctaatt ttctgtattt ttagtaagat agcgtacatt atgttggcca agctggtctc 000480
000481 aaactcctga cctcaggtga tttgcccacc ttggcctccc aaagtgctag gattacaggc ttaagccact gcacctggcc 000560
000561 tgtgttacat attttgtata tagatatata aatgaggaac attaataaca ttttaaaata atgactacat ctttgttttc 000640
000641 caccaacaac caacatgggt ttcattttta ttgcatcatc aacagagttg gcatttttta aaaaatatat agtggccatt 000720
000721 ctaatgggtg tgagatgatt tcgctgtcat tgtgtttttt tttcatttct ctgcaaatga gtaattttgt gcatcctgtc 000800
000801 aaatgtttct tcccatttgt gtagtttttt gatgaaagtt ttgtttgttc atttataaat caagttattg aactttatgg 000880
000881 tttagttttt agagttgttg atatattttt aatattaact tttttcacat gtaatttgca aatatattca cccattttct 000960
000961 aaatatgttg tcattctcga attttctttt gatgtacaga aattttgaca tctactatag ttaatggttt ctattcttgt 001040
001041 atttgttgct catgcattta atgtcatatc taagaaaatg gtgccaagac aatgtcatgt ctttttcctg tattttttct 001120
001121 gaaagatttg ttagtttttt gtgtctaagt attttattta aaatatattt ttgtatcatt caagaaaata atccaacttt 001200
001201 attttatcga tgttgatatt cagttttcaa caccattttt tgaagagatg atttttctct attttgtact catggcaacc 001280
001281 ttttggaaga tcatttgatc atatacagaa gggttcattc cggagctctc tattctgttc tttcatctgt ttatctttgt 001360
001361 gtcagtatca cattgtttat gttactgtag ctttTAACTG TAGGTTGTAT TAACATCTTT GAAAAATAAA GTTTTTTGAC 001440
001441 CCCTGA
[back to top]

Predicted Small Protein

Name NONHSAT063653_smProtein_734:823
Length 30
Molecular weight 3430.1737
Aromaticity 0.241379310345
Instability index 48.8034482759
Isoelectric point 7.84637451172
Runs 4
Runs residual 0.0616379310345
Runs probability 0.0311561561562
Amino acid sequence MISLSLCFFFISLQMSNFVHPVKCFFPFV
Secondary structure LEEEHHHHHHHHHHHHLLLLLLLLLLLLL
PRMN HHHHHHHHHHHHHHHHHHLLLLLLLLLLL
PiMo i????????????????????????????