NONHSAT063865
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT063865 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2887 nt |
Genomic location |
chr19-:23437855..23440741 |
Exon number |
1 |
Exons |
23437855..23440741 |
Genome context |
|
Sequence |
000001 caccacacct ggctaatttt tgtatttcta ttagagatag ggtttcccaa tgttggtgag gctgatctca aactcttgac 000080
000081 ctcaggtgat gcacctgcct cagcctccca aagtgctggg attacaggtg tgagtgactg cgcctggccT gtaaaatata 000160 000161 tcttgaccta gatcacagat gcaatgatta ctctcatacc tcacagtatt taataggaga gatgctctct cttgctctcg 000240 000241 ctctcttttt tctttttttt tttttttgag acagttttgt tcttgttacc caggctgcag tgcaatggcg tgatctctgc 000320 000321 ccaccacaac ctctgcctcc caggttcaag cgattctcct gcctcagcct cccacgtagc tgagattaca ggcatgtgcc 000400 000401 accacgccca gctaattttg tatttttagt agagatgggg tttctctatg ttggttaggc tggtctcgaa ctcccaacct 000480 000481 caggtgatct gcccacctcg gccttccaaa gtgctggggt tacaggcatg aaccactgtg cccagcccaa gatgctgtct 000560 000561 cttaacagct aggcctagag tcatgaatat gattctgggt ctccttgtac aaaggtcatg aagaattgcc actttcttgc 000640 000641 atactgtata aatctcttgt ggtacagaga gtgtcattac agggttcagc atacagatga gattgtttct catatacact 000720 000721 ccccaccaac tgttagaatt gtcaccctca cacatggaca gagcccactg gtgaggccct gaatctcaca cacacacaca 000800 000801 gtctacagtt aaaattgtga ctgtcatatg tgaacatctg gctagagttg aaataatgac ttatttctaa atccagttca 000880 000881 taggtgagaa ttctacctgt ctaagcctag gtaggatagt caacatgtcc ctaattggct gggggacatg ttgactctcc 000960 000961 tacctgggct tagggcCAAA CAGTTCATGG AAGGGATGAA GGCTCTCAGC TCTCATGCAC AGATCCAGTT GGTGAGATTG 001040 001041 TCACTAGCAT ACTTAGACCC AACATACTCT GATACCTAGA ACTGGGACAT GTGCAGGATT TTTAATTAct ggaccttcct 001120 001121 gcaggtgtga ttgtgacata tgtctttgtt acacacctga gtggtttgat gttcctgcct tggttcaacc caaagtgaag 001200 001201 attgtgatgt gtcactggac ccagcatctc agtgatgtga ctcttctttt tggacaccac aaattttggg tattgtcaaa 001280 001281 tattgctgga tcctgtaccc atgttatgtg actctccaac ctatgtcctg catgttgtgc catattgcAG CACAATGTGT 001360 001361 cacattagac atcattacat attgctgggc tcaacaccca agtgatgtaa cattttcctg ggccttgact acagggggct 001440 001441 ttgtgacata actgaatgcc cataaccatg gtaatgttac tcttctcctg cctggtctct gctcacaggg aaattgtgac 001520 001521 ataccattgg cctagcatct tggtgatgtg actctcctct ttttctcagg ccccacatat ttgggtattg tgacataccc 001600 001601 aaatgtgaca ctgggctcaa cacctaaggg acgggagttc tctacctggc cccttcctga agggggcatt gtgacatact 001680 001681 tctgcacagg tatgtcacag ttattaccta ggagatgtga ctctcctctt ttgccagcac cctgcttaca gggaaaattg 001760 001761 tggcacattt ctgtggccag caaccaggtg atgtgtttct cctgcttggg tctttattac agaaaagatg gttgacatat 001840 001841 cactaggccc agcatctagg cgatgtgact gtcttcttct gcctggtccc tgcttacagg aacattgtag catattgcta 001920 001921 tgcccagcac ttttctcttc ttttaggttt tgcctgcagg agactttgtg acattgctgg gccctgcact gacattatct 002000 002001 gactcttctg tctctgccta cttgggccat tgtgacatat tgctgggtcc aacatccagg tgatgtaact tttatgcctg 002080 002081 ggtcctggca ccagaggaca ttgtctttgc accactcaca caggtgatgt gattttcttc tgttacctgg tctctgctca 002160 002161 caggaagaat tgtgaccttg gccaggctcg gtggctcaca cctgtaatca tagcactttg ggaggccgag gcgagtggat 002240 002241 acctgaggtc aggagttcga gaccagcctg gccaacatgg tgaaaccccc atcttactta aaacacaaaa attagctggg 002320 002321 cgtggtggca ggcgcctgta gttccagcca cccacgaggc tgaggcagga gaatcgcttg aaccaggtag gcggagattg 002400 002401 cagtgagccg agattgcgcc actgcactcc agcctgggtg acagggagac tccatctcaa agaaaaaaaa agtgaccttt 002480 002481 tgcagcacat agctgatttg actgctttgT GGAGTACACC AAGCAGGTTG TCAAACTGGT GGTCCCTTTA CTGAAATTTT 002560 002561 ATTTCCACAA TGGTGTTGGA GGGGCAGCAG CAGAATCCGT GCCTTTTCTT CTGGAGTGTG TGAGAGTCCG TGGTCCTGAG 002640 002641 TATCTCACAC AGATGTGGCA ATTTATGTGA TGTTCTGATT AAGACCATTG GTACAGAAAC AGATTCAGAT GTCCTCAGAA 002720 002721 ATAATGCATT GTTTAGCAAA GTGCATTGAA GTTATGGGAG ATGGATGCCT TAATAATGAA CACTTTGAAg aacacctttg 002800 002801 ccacatgtcc tcaggacctt ctgagggctg tgtcatgggg catggtcact catatttgac tcaataaatt tcttcaaata 002880 002881 ttttaaa |
Predicted Small Protein
Name | NONHSAT063865_smProtein_617:781 |
Length | 55 |
Molecular weight | 6411.3841 |
Aromaticity | 0.0925925925926 |
Instability index | 71.3314814815 |
Isoelectric point | 8.61627197266 |
Runs | 9 |
Runs residual | 0.00397470641373 |
Runs probability | 0.0385974209504 |
Amino acid sequence | MKNCHFLAYCINLLWYRECHYRVQHTDEIVSHIHSPPTVRIVTLTHGQSPLVRP |
Secondary structure | LLLLHHHHHHHHHHHHHHLLLEELLLLLEEEEEELLLLEEEEEELLLLLLLLLL |
PRMN | - |
PiMo | - |