NONHSAT063998

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT063998

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6041 nt

Genomic location

chr19+:28283686..28301979

Exon number

3

Exons

28283686..28284140,28284440..28284558,28296513..28301979

Genome context

Sequence
000001 cacactccaa aacaaaaaca aaaacaaata aaaccatatc gaggcCCTAC TGTGATTTAG AAAACTGGCA GAGCAAGATT 000080
000081 TTCCAGGGAG TTGCTATGAT TTCTCATTTT CACTATTTAT AATAATGGAA AATATGCACT CCTTAGTTTT CTTCTTGGAG 000160
000161 AAAGTCTGAC TTGTCAAACA CAGATGACTT TTCAGTTTAG TTTTCAAGGT TTAATTTCTT ACCTTGGAAA TCAATTAAAT 000240
000241 TTGTTTCTTT AAAATGTCGC AGTAAAATTG CTCCTCCAGA CAGATGTCCA CGGAGATTCT GTCCTGCTGC GTCCGCCTTT 000320
000321 CACAGAACTG AGGTTGTTCC TACACCAGTT TCAGAAGCGT GTAGGCACGC TTTATTACAG TGGCAGCAGC GTCCCTGTGC 000400
000401 GAGGTCTAAC CCAGGTGTGG GCCCTGCAGC CAGCCCGGGG GTCCAATGGG TCCTCCTGGT CTGCGAGAAA TCAAACTTTG 000480
000481 GGCACAAGTC ATGAAGCCGA CAAGCCCGGG AGACACAGTG TCAGAATTAC AAGGTGAGAT CAGCCGCCCG GCCAAGCTAT 000560
000561 CTTCTCGCTA GCAGGTCTCG CATCTGGGGC TCGATCTCGT GCAGAGGAGC ATTTCCGAAG ACACTGGCCG CTCCCACAAT 000640
000641 GGCTCCGAAG AACCCAGCGA CCAGCGGGTT CATGAGTTTG TTGGGGCTGT CCACTCGGTA CCAGCTGCGC AGGGATGTCA 000720
000721 GGACAAAGAA ACAAGTTGCC TGGTTCCAGC CCTGCTTCAG CACGGGGCCT GTGGGGCCCC GGTAAGTCCC GGTGTTCCCG 000800
000801 CACAATCTCC TAACCCTGTG GAAGAATCCC CTGTACTTGG ATTTGGAGAG GTCTGGCCAT GGATTAACTT CACCTTGATG 000880
000881 GTCTCCATGG GACATAGGAC CACCACGGCC TCGGCCACGC TAGCTCACTG GCCGCACCGC TGCCCGCCTT GCTGTTCACC 000960
000961 AGTCCCTGGG CATCCCGCAT CTGGTTGCTG AGGAACGCCT GACGCCGCCT TGTGGATGAA GCCGCAGAGC AGGGAGCTGA 001040
001041 GGCTGCGGCC CAGGCCCAGG CTGCCTTGGC TGCGACTGTG TGCCTGCAGG CCCCATGCCC GGTATCCGGT GGATGCGAGT 001120
001121 GCTAGTCCAG CTGCAGCTGC ATCTTCACGA ACTCGGTGGG GAACGGGATG CAGATTTTTT TTTTCTTttc cttccttcct 001200
001201 tccttccttc caacttcctt ccttccttcc CCTTTCtttc tttctttttt tttttttttt ttttttgaca gaattttgct 001280
001281 cttgtccccc aggctggagt gcagtggcgc gatcttggct cactacaacc tggattcaag cgattctcct gcctcagcct 001360
001361 cccgagtagc tgggattaca ggcatgtgcc accattcccg gctaattttt ttgtcttttt agtagagacg gtgtttcccc 001440
001441 atgttggtca ggctggtctc aaacgcctga ctcagatgat ccgcccgcct cggccaccca aagtgctgag attacaggct 001520
001521 tgaaccaccg cgcctggccC TGTGATGTAG ATTTTGATGC TGCCAGCCAG GCTGCCTGCC GGGATCGCCT GCCCTGGAGC 001600
001601 AGGAGCATCA GCCGTGCGTT CCAGGACGCA GGCATGGCAT GACCGGCAGG AGGCGGAGTG CCCGGCGTCT CTTGGGATCG 001680
001681 GAGCCTCCTG AATTCCACGC TGGGACCTTA ATTTGGTTTT AACACAAATA AAGATCTCAC ATAAAGATAA AAGGGGATGT 001760
001761 GTTGGCTTGT AATTTTTGTT AAAAGCAATG GTATATGTTG TATAGGATAG TGTATTGGGA TCAACAGGTT TTTGGGGTTT 001840
001841 TTTTTCAGCC CACTGACATT GAAAGGGATA AACAGTTTTT TGGTTATTAG TGAGCAGTTT TCTCTCAGGC CATAGTGTAG 001920
001921 GGGTTTGTGG TCATGTAGAT GAGAGATAGG CTGGGATTAA AATTTGTTAT GGCAGTAATA AGAGCAACAG AGCTAGACTC 002000
002001 TGTCAAAAAA AAAAAAAAca tagttagtag aagaaaaaaa tcataggatt ataggattag agcagaaaaa aataaaacaa 002080
002081 aaactacaaa agattaatga aaatatttgg ccttttagaa aagttaaaaa ttggcaaacc ttcagcagac taaacatttt 002160
002161 ttttttaatt caaataaaaa aacgagttaa aaaaggagat attacaacag ataacacaca aattcaaaga ttggtttgtg 002240
002241 gctactataa gcaactgtat gccaatacat tggaaaatct aaaaaaaaaa aaaaaataga caaactccta gagacataca 002320
002321 acctaccaag attaaacagt aaagaaatcc aaaacctaaa cagaccaata acaattaatg agattgaagc tttaataaaa 002400
002401 aaactcttcc aggaaagaac agcccaggac ctgatggctt cattactgaa ttttaccaaa catttcaaga agtaatacca 002480
002481 attcctattc aaactattct gaaaaataag gaggagggaa tactttcaaa ctcattctat gaggccagtt ttaccctgat 002560
002561 atcaaaacca gacaaagata catcaaaaaa aggaaactgc aggccaatat ctctgataaa tactgatgca aaaatctcaa 002640
002641 caaaatacta gcaaacagaa ttcaacaata cattaaaaag attattcatt atgaccaagt ggggtgtatc cctgggatgc 002720
002721 aaacatagtt taatatacac aaatcaataa atgtgatatg tcatatcacc agaatgagga aaacagcgtg gtactagcat 002800
002801 aagaacaaac acatagacca gtgaaaaagg atagagaacc cagcaacaaa tccacacatt tacagaaaac tcatttttga 002880
002881 caaagatatc aagaacatac agtggggcaa agacagtctc ttcaataaat ggtgctgggg aaactggata tccatatgca 002960
002961 aaagaataaa actggattcc tatctcccac catatccaaa aacaaatcaa aattaattaa acatgtgaat ataagacctc 003040
003041 aaattatata aaactactat atataaaaaa gttgtgaaaa attttcagga catcagtatg ggcaaaaatt tcttgagtaa 003120
003121 taccccacaa ccataggcaa cctaagcaaa aatagacaaa tggaatcaga tcaaggtgaa aagcttctgc acagctaagg 003200
003201 aaacaatcca caaagagaag agacaaccca cagaatggga gaaaatactt gcaaaccact caactgacaa gttaataatc 003280
003281 agaatataga aagagctcaa acaagtctat agaaaaacat ctaataattc aattaaaata ttggcaaaag atttgaagag 003360
003361 gcatttctct aaagaaagca tacaaatggg aaacaggcat ataaaagttg aacctcagag aaatgcaaat cagaactaca 003440
003441 gtgagatatt atctcacccc agttgaaatg tcttatatcc aaaagacaga cattaacaaa tgctgacgag gatgtggaga 003520
003521 aaagggaact tttgtgcact gttggtggta atgtaagtta gtacaaccac tataaaaaaa acattttgaa ggtttcttaa 003600
003601 aaaactaaaa gtgagctacc atagctacca tgcaacccag caatcccagt actgggtata tacccaaaag aaagaaaatc 003680
003681 agcttgttgc ttcactgttt acaatagcta tgatttgaaa gcaaactgtc taccaacaga tgaatggatt aaaaaaaatg 003760
003761 tagcacatat atacaatgga gtagtattca gccataaaaa tgagattttg tcttttgcaa caatgtggat aaaagtggag 003840
003841 agtatgttaa gtgaaataag tcagacacag aaagacaaac ttggcatgtt ctcacttacc tgtgggatct aaaaatcaaa 003920
003921 acaattgaac ccatggacgt ggagagaaga ggttagtttt cttaacctct ttgagaggtt aagcaagata gtaggggctg 004000
004001 gcggaaaggt ggggactgtt aatgggtaca ataaatagaa taaatataac ctactatttg gtagcacaag atgactatag 004080
004081 tcaataataa tttaattgta cattttattt tatattttat attttatttt atatatttta ttttattgag gtagagtctt 004160
004161 gctcttgtca cccaggctgg agtgcaatgg tgcagtcttg tctcactgca acctttgcct cccaggttta agcaattctc 004240
004241 ctgcctcagc ctcctgagtg gctgggattg cagccacctg ccaccatgcc cagctaattt tttgtatttt tagtagagat 004320
004321 gggttttcac caCATGCCCA GCCaattgca cattttaaac taagagagaa taattagact gtaagacaaa aaataaatgc 004400
004401 ttaagtgggg gagggtgtat cccattctct atgatgggag tattatgtat ttcatgcctg tatcaaaaca tctcatttat 004480
004481 ccccataaat atatacacct actgtgtacc cacaaaagtt aaataaatta aatttaaaaa attaaaaaat aaaataGCAT 004560
004561 AGAATTAAGT AGGCCCAGAA ATATGAGGAT TTTAATGAAA TGATAATACC TAAGTAATAA TCAATCAAGA AGTAAAAACA 004640
004641 AAGTCATACT TCACTCCCAT TTTTGTTTCT AATCTATATG TTTTCTACTT TAAAGCTGTA GAATTTTCTT TTTTTCATTG 004720
004721 CTAATTATAT TTTAATGTGA CTAGTCTGGG TCTATTTTTT CTAAAATTTT CAGTTTTTCT ATATAATTTT TCTCTAACTT 004800
004801 TTAGTTTCTT TGTTTATGCC CCTTATATtt ttgagaagtg tctattcaga tttttgccca ttttaaaact ggattattta 004880
004881 attattttct attgagtttt ttgtttcttt tgtattctgc ttatcaatcg cttgtcggat gtgtagcttg cacatatttt 004960
004961 ctctcttatc tcttttttct ttttgagaca gagtctctct catcacccag cctagtgtgc agtggcacga tctcagctca 005040
005041 ctgcaacctc tgcctcccag attcaagcga ttctcctgcc tcagcctccc aagtagctgg gattacaggc gtgtgtcact 005120
005121 gcgcccagct aatttttgta tttttagtag aaacagggtt tctccatgct ggccaggctg gtcttaaact cctgacctca 005200
005201 ggtgattcac ctacctcggc ctcgcatagt gctgggatta caggcataag ccaccatgcc cagccttatt ttctctcatt 005280
005281 ttaggaattg tctcttcatt ttattgattg tttcctttgc tgtgcagaag ttttttgtat gatgtgatct catttgtaca 005360
005361 ttttactctc attccctgtg cttttgaaac attatttaaa aatctttgct cagatcaata acccgcagtg tttttctaag 005440
005441 gtttttttgt ggtagtttta tagtttcacg tattcgattt aagtatttaa tccatttcta tttgattttt gtatggagtg 005520
005521 agagataggg gtctagtctt attcttctac ctatggatat tcagttttcc cagcatcatt tacagaaaag accatcattt 005600
005601 atccagtgta tgttattggt gtctttgtca aaaatgagtt cactacaaat gtatgaattt tcttctggat tcactattct 005680
005681 gttctattgg tctacatgtc tgttttaatg tcagtaccat gctgttttgg ttagtatatc tttacagact attttgaagc 005760
005761 caagtagtgt ggtggttcca gttttgtttg gttttgcttt tgcttaagat gcctttgaat attcttttat gtggttttat 005840
005841 ataaatatta gaattttgtt tctacttctg tgaagaatgt cattggtatt ttgatgggat tgcattaaat ctgtaaattg 005920
005921 atttggcagt atgaacattt taacaacatt gattatttta tttcatgcaa tataaaatac cttttcattt tgtttcatct 006000
006001 tctttaattt ctttaattta tattttacag attcattata g
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Predicted Small Protein

Name NONHSAT063998_smProtein_1094:1267
Length 58
Molecular weight 6942.1101
Aromaticity 0.298245614035
Instability index 57.0684210526
Isoelectric point 5.97808837891
Runs 5
Runs residual 0.0662280701754
Runs probability 0.0171347818407
Amino acid sequence MPGIRWMRVLVQLQLHLHELGGERDADFFFLFLPSFLPSNFLPSFPFLSFFFFFFFF
Secondary structure LLLLHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTToo