NONHSAT065867
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT065867 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4343 nt |
Genomic location |
chr19-:36031641..36036149 |
Exon number |
2 |
Exons |
36031641..36032486,36032653..36036149 |
Genome context |
|
Sequence |
000001 CGGGCAGCCA GATGCTGGAA CGGGAGGCAC ATGTTCCGGC CCCGGCCCCT GGGAAGGAAA GAAAGGACCT TCCCGTTTCA 000080
000081 CTTGTCTCGG CTGAACATGT AGCGGAGGAG GTCGACCACC CGGTGACTGT AGCCATATTC GTTGTCGTAC CTGTGGAGGA 000160 000161 GGGGTCGGGA GGTTCAAGGG GGTTCCTTCC GACCACCCCT TAGTTCCCCT CCCTCTAAGT CTCCAGCTCC TTCCCCCTTA 000240 000241 CCATGAAATG AGCTTCACGA AATTGTCATT GAGCGCAATG CCGGCCTTAG CATCGAAGAT GGACGAGTGG GTATCACCGA 000320 000321 GGAAGTCCGT AGAGACGACC TGGAAGTCAG AATTTCAAAG ATAAGTGTGT CCGGCAGAGC AAGGACCTCC AGGAGCTGAG 000400 000401 GCCCCGACTC TTAACTCTAT CGCCCATCCA TGCATTCATC TATAATATTT GATGTAGCCC TACTGTGTCC AGTCTCTGGA 000480 000481 CTGGAGGGTA TGACCAAGTG CAGGGTATGA CCAAGGCACT GTGTCAGGGT CTGGCCAAAG GGCACAGGTC ACAAACACCC 000560 000561 TCATGCTGTA CCAGTACATC CCTTTCCTAG GAATAATGCA AGCGTTTGGA ATGGGCCAGC ATGGAGGGCC TCTCTGAGGG 000640 000641 GTGGCCATGA GCCTGGGTCT AGATGACTAG AAAGATCTGA CCGGCTGGGG CCCTCAGCAC AGTGTCTGAG GTAGAAGGAG 000720 000721 CTGCAGGAAG GGaggacctg agggttttag ccctagtgtc atgaaaggcc acaggagtgt tttcaatcct gaaaacgggt 000800 000801 gatgcaatgt gattccatta aaacaaaaga tcccagtgac tgtgggaaag tggacctgca ggagttaatg cagggagaca 000880 000881 gcaccaaggt ggatgtacag gggtccaCCA TGACCATGGC ATCCACTCCT CACAGAGAAG GCATCTGGCC ATGGCCTGGC 000960 000961 CCTGAGCAAG TATTGAAAAA AATGGGAGCT GTTGtctttt gttcactaag catgtattag tcacctgctg tatgccaggt 001040 001041 tggagccaca aaagtgaaaa ggcagcccct aaatccctgt tttcttggag tgcacacacc actggggcca acagtgacta 001120 001121 tgaaatgaaa tttcaggtga ggaatatggc cacaaaaaga acatattttg agggggtgcc ttgctgaaga gggaggttcc 001200 001201 tccagagact tggaggaagt aaggacagac tgtatggtca cctggcaagg gaagcattcc agactaaagg aacagcaagt 001280 001281 gcaaaggccc tgaggcaggg agATCTCCCT TCCTGCCCTG CAGTTTCTGA CTTGGCACAT TGAGAGCAGC TCCCTGGCAA 001360 001361 GTGGAAATCA TGTCCCTTCC CAGAGGGCTC CTCCCAGGGT CTCCTCTCCT CAGCCCCTAC CTCATCCTCG GTGTAGGCAA 001440 001441 GGATGCCAGC CATGGGCCCC TTGGCTGCTG CTTTTACAGC CTCCTTGATG GCTGAGTAGG GGGCAGGCTG GGCGAGGCGG 001520 001521 CAGGTCAGGT CCACGACAGA CACATCCGGG GTTGGTACCC GGAACGCCAT CCCTGTCAGC TTCCTGGAGA ATCCCCCATG 001600 001601 AGGAACAGGA GTCAGAACTT AGGGACGTTG CCCTCCATTC CCCCTTTCCC TGTGGCTGGG CCAGGCCCCT GCTTTCCTCT 001680 001681 TAAGGACTGA GGGCCGGGCC AGTCCAGTCC TCCTGGCGTA TGCCCCCACC CTGGTTGCAG CTTCTTGTCC TCATACCCTT 001760 001761 TGAGCTCTGG GATGACTTTG GTCACAGCTT TCGCAGCCCC AGTGGAGGCT GGGATGATGT TCTGGTGGGC ACCCCGCCCA 001840 001841 TCTCGCCAGG CCTTCCTTGA TGGCCCGTCC ACTGTCTTCT GGGTGGCCGT GTAGGAATGG ACTGTGGTCT TGGGGAAGAG 001920 001921 AAGGACCAAG ATGAGGCCTT CATGCTCCTA AGCTCCCATG CCTCTTTTTT CCAGGACTAA GTTGGTGGCC TAGGTGTGGA 002000 002001 GGCTGGTGGG GCCACCACCA CAGACCACAG GAGGGGATGT GTGCAGGCCA GGGTCCAGCC TTGCCTGAGG GTTGCACAGT 002080 002081 GTTTTAAGTG ACTTCTGCAC TGGTGGGCCT CTCCTCCCGA AACCAGTCTC TCCCTCTTAA CTCCATACAG TAAGCAAGGC 002160 002161 CCGGGAAGAA GTTGGGTTTC CCTGCCATCC TTCCTGCCCC AGCCCCTCAT CCTCAACTCA CCATCAACCC TTCCACGATC 002240 002241 CCAAATCGCT CGTGGATGAC TTTGGCGAGG GGAGCCAAAC AGTTGGTGGT GCAGGACGCG TTGCTGAAAC AGCCAAGGTG 002320 002321 TGCACGGACA CTGTGAGGTG AGTCGCAGAG CCACCCCTCC ACCCTTACCC CTCTTGGGGT ATGCACGCAG ACTTGGTTTT 002400 002401 ATGAAACGTC AGGATGAGGG TGAGAGGGAT CTGTGGGGAC ACTGTCAGAC TGAAGGAGGC ACTGAGGTGC AGCTGGGGAG 002480 002481 GCTCCCCAAG CTTGTCCTCT GGAAGTCATG CGTTTTTAGC AGATAGTTTC GGGAAGGAGA AGCAGAAGCC AAGCGACCAG 002560 002561 GAATCCAGTG GGGCTGAGGG TGGGGAGGAC GAGTCTACCC TCCCTTCCAC ACATTGCAGG ATGTCACTGC CCACATTACC 002640 002641 TCACAATGTT CATGGAGCCA GGGTTATAGT CATTTTCATT GACACCCATG ACGAACATTG GTGCATCCGG TGAGGGCGCG 002720 002721 GAGATGACCA CACGTTGAGC ACCTGCAGAG ATGTGGTCCT GGGGAGGAAG CGCAGGTGTC AGGGGCTTCT GGCACCATCA 002800 002801 TCCCCCCAGC TAGCCCTGGG CACCTCTCCC CAGCTTACCG AAGCTGCCTG TATGGAGAGG TACACGCCTG TGGACTCCAC 002880 002881 CACGTAGGGG CTCCCGACAG CCCTCCAGGG GATCTGTTTG GGCTCTTTGC TGTGGGGAAG TGGCAGGGCT GAGTCAGTCT 002960 002961 CCCCTGCTTG AGCCCCACCT TCATAGTCCA TGGCTTTCAC CATTTGACAG GCTGAGCAGG TACCGGCCCA CCTGCAACCA 003040 003041 CCTGCGTCCC CTACCCCACA CACCTACTTG TTCCAGATGG GCTCCACCCC GCTGGCCTAG CTTTTCACCA CTGCCCCACT 003120 003121 TCAGACCACT TTCCCTTTGC TGATTGCACC ACCCCTGTTA TGCCTGGGTA CAGGTGGTGA CCTCCCCAAC TCAGCCCTCA 003200 003201 ACCTCCTCAG AGGCGCCAAT GCTGACTGCT GTCAGCCAGC CCAGACCCTT TCTCCATATG CTGCCCGGGA CGTGGACTCT 003280 003281 GTGACTGTGA GGCCTGCCCG GCTGCTTTCT GCTTCCCAGC TCTGACAACC TCGCCATGAA CCCTCCTAGA CCCTCAGCTC 003360 003361 CTGCAATAGG AAGCTGGCTG CCAAAGGCCA GGAGGGTCCC TGAAAACAGA CACTGCATTA AAGAAAAAGC TCCTGGAGGA 003440 003441 CTCCTGAAGC CTGAGGCAGC CTTGGGGCAG CAGTGGCTCA TGGTTTACAT TGGAAAGGTT TATCATGAGT AACCGGGTGC 003520 003521 TTTGCTTCTG TGATTCTTGG CCAGTGTCGG TCTGTTTCCT TTGCCATTGA GCCTGCTCCC CTCAATGGGG GGTTCAATCA 003600 003601 ATGTTTGTGG GGtttgtttg ttttgagaca gggtcttcct ctgtcgccca ggctggagtg cagtggtgca atcagagctc 003680 003681 actgcagcct tgatcttcct ggctccggcc atcctcctgc cttggcctcc cgagtagctg ggactacagg cgcacaccac 003760 003761 catgccaagc taatttttaa atttttttgt agagatgggg tctcactttt gttgcccagg gtgctttaga acccctgggc 003840 003841 tcaagtgatc cttgacctcc cacagtgctg ggattacagg tgtgagccac cgtgcctggc cTCATGGGtt ttctttgttt 003920 003921 tgttttgttt tgtttttgag acagagtctc actctgtcac tcaggctgga gtgcagtggc acgattttgg ctcactgcaa 004000 004001 cctccacctt ccgggttcaa gcgattctcc tgcctccgcc tcccgagtag ttggggttac aggcatgcgc taccacacct 004080 004081 ggctagtttt ttattgttgt tgttttttgt atttttagtg gtgacggggt ttgctctgtt ggccaggctg gtctcaaact 004160 004161 cctgacctca ggtgatcccc acttcagcct cccaaagtgc tgggatgaca ggcatgagcc tctgcacctg gccTCGTGTT 004240 004241 TTTTTTTTAG TTAGCCATTT TATACGTGtt tactgaacac ctgtcctgtg cccatattct aagtgcctta cctgcattaa 004320 004321 actcatgtaa ccttcacaac ccg |
Predicted Small Protein
Name | NONHSAT065867_smProtein_11:202 |
Length | 64 |
Molecular weight | 6639.4607 |
Aromaticity | 0.031746031746 |
Instability index | 49.4047619048 |
Isoelectric point | 4.93194580078 |
Runs | 9 |
Runs residual | 0.00210560414642 |
Runs probability | 0.0347995053878 |
Amino acid sequence | MLEREAHVPAPAPGKERKDLPVSLVSAEHVAEEVDHPVTVAIFVVVPVEEGSGGSRGFLP TTP |
Secondary structure | LLEEEELLLLLLLLLLLLLLLEEEELHHHHHHLLLLLEEEEEEEEEELLLLLLLLLLLLL LLL |
PRMN | - |
PiMo | - |