NONHSAT065942
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT065942 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2036 nt |
Genomic location |
chr19+:36440386..36442421 |
Exon number |
1 |
Exons |
36440386..36442421 |
Genome context |
|
Sequence |
000001 TATGGAAGCA GGAAGGATGG GAGGAGGGCA GACTGGTCCC TCTAGCATGG GTCCCCCATG TTCCCCCACA GCATGCCTGG 000080
000081 ACCACCCCCA CCCGCCTGCA GAAACACACA ATCACATGTG TCTAGGATTT AAAGTTAAAA TTTTGCTTGT CAgctaggca 000160 000161 cagtggctca tgcctgtaat cccagtgctt tgagaggcca ccctcaggga ggattgcttg agcccaggag ttcaagacca 000240 000241 gcctgTTTTC AACTCCGTGG ACCCTGTGAG GCACACTTCA CTCTCCCCAG CCCTCTGGAT AAAACAGTAG TTCCTTAGGA 000320 000321 ACTTTAACTT CCCCCAAAAT GCTGTGGCCT CCCAGGCAAC ATAGCCATAC CCCATCTCTA CAAATAATAA TAATAATTAG 000400 000401 CTTGTCCAAC TGCCTAGCTA AGTCCATCAA TTTCCTGAGC TCAGGGAGTA CAACTACTTC TACTGTCAAT TCCTCATCAA 000480 000481 TTCCTCATCT GCTTTTGGCC CCACACATTT TTTAGACCAA AGCTCCGGCT GCTGGAGCAT TATCTTGAAG TGACTGTAGA 000560 000561 CCCAATACCA GGATTCTGCC CTGTCTGTGT ACTGCCAGAT CCAACCCATG TGTCTTGGGG TGGCTAAATC TGACAAAGGC 000640 000641 CCTGAGTGTC TGGGGACACC TGTGATCTCC TGCAAGGCTG AGGCTAATGC CACGCTTTTG CAGCTCTTTG CATGGGCACA 000720 000721 TATGTGAGAG AATCAGATAA AAGGTGTTCC CAAAAAGGAT GTTTGTGTTC AGGGTGGAAC CTGACGCCTG CCTCCTGCCT 000800 000801 TTGGGTCCTC CCTGATGGCT GTGCCCTCTC ATACCTCGCA AAAGCAAAGA TAGGTATCAG TGCTGCCTGT CGTCCTGAcc 000880 000881 tgtgcggagt gacgttggga acattgtggt gaccaacaca gccctagccc ttgccctcag agttccagtt caaggctggg 000960 000961 agcagtggct catgcctgta atcccaacac tttgggaggc cgaggcaggt gggtcacttg aggtcaggag ttcgcaacca 001040 001041 gcctggccga catggtgaaa ccccaactct actaaaaata caaaaattat ccgggtgtga tggcaggcac ctataatccc 001120 001121 agctacctgg gaggctgagg caggagaatc acttgaaccc gggaggcaga ggttgcagtg agccaagatt gggccactgt 001200 001201 agtctagcct gggcaacaga gcgagactcc gtcccaaaac aaaccaacaa aaaagagttc tatttccagt ggaggaaata 001280 001281 gataatcaca aaacaatggc atcccagagt ggtcgggGAT GGGGAAAGAA CAGGCAAGAA TGATCAGGGC TTTTGCAGAA 001360 001361 GCCCAGGGGA CTCCCAGAGC CAGAGGGTTG tacacttgat cttagccaaa aggccaagaa gcaatCTGAA GTTTCTAACT 001440 001441 GGGCCTGGGA TGGGAGGTGG GGAGACAGTC CAAGATTTCC TGAGGcaggg ccagctttat ggcagtgtga ctgtggggtt 001520 001521 gcaccatgcc ccaaacttag aagtacccta tgcttgcttt aatgccctag tgtcactatc ttgaaattaa taatttttga 001600 001601 acaagggccc cacattttga ttttgcactg cgccctgcaa attatgtagc cagtcctgCC CGGAGGAGCG AACACTTGAG 001680 001681 GGATTTACAG AGAGAGCCGA GGCAGAGAGG GTCTTCCCAG GAGAGAGAGC ATTGGGTACA AAAGCCAAGA GAGggccagg 001760 001761 cgcagtggct catgcctgta atcccagcac tttgggaggc tgaagcgggc gaatcacctg aggtcaggag ttcaaaacca 001840 001841 gcctggcaaa catggcgaaa acccgtctct actaaaaata caaagaatta cctggacgtg gtgtcaggaa cctgtaatcc 001920 001921 cagctacttg ggaggctgag gcaggagaat cgcttgaact tggaaggcag aggttgcagt gagcccagat cctgccaccg 002000 002001 cacactagcc tgggtgacag agtgagattc cgtctc |
Predicted Small Protein
Name | NONHSAT065942_smProtein_338:514 |
Length | 59 |
Molecular weight | 6309.2759 |
Aromaticity | 0.051724137931 |
Instability index | 47.4879310345 |
Isoelectric point | 9.50140380859 |
Runs | 9 |
Runs residual | 0.0014209928003 |
Runs probability | 0.0869398810576 |
Amino acid sequence | MLWPPRQHSHTPSLQIIIIISLSNCLAKSINFLSSGSTTTSTVNSSSIPHLLLAPHIF |
Secondary structure | LLLLLLLLLLLLLLEEEEEEELLHHHHHHHHHHLLLLLEEEEELLLLLLLHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooooooo |