NONHSAT066079
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT066079 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3990 nt |
Genomic location |
chr19+:37742800..37750921 |
Exon number |
3 |
Exons |
37742800..37743084,37746801..37747716,37748133..37750921 |
Genome context |
|
Sequence |
000001 ACGCTGGGTC TGCAGATGCC ATCCAGGCGC ACGGCGGGTA TAGTGGTTCC GCAACCTTGG GATGTTCGGC TGAGCGCCTG 000080
000081 CCTAACATGG GAGCGCCTGC CTAACCCTCC TGACTGGAGG GTCAGCGGCG GGGAGTCCTG GCCTTCAATC GGCCATCGCC 000160 000161 ACGGCAGAAA CTGGGGCCCG GGCTGCGTCC AGGCCCTTCC CCGTCCGTCC ACAGGTCTCA TGGGCGCCCG GACTGGGGCT 000240 000241 GATGTAGTTT CCCGACCTCT GACACATAGG ATCTGGAGAT TAAAGCTGCT CTGCTAATAA TTAGGTTCCC ACCTCTCAAG 000320 000321 ATCATTAGGA GCTTCTTTTC CAATTCCTCT GTTTTGCATG CATTGGAAGG TAAGTTTCCT TGTAAACCAG ATTTTGGACT 000400 000401 CTGCAGGCTT TGCCAAATGG CCTTTTTACC CTCATGTATA TTGCATTTTC TTTGGATAGT CTCATGGATT CTCAAGGATA 000480 000481 TTGTATTCCT GTATTTTACC ATTCATGAGT TTAGAAGTGT GTTTACTTTC CTGAGTTTTC ATTTTCTTTT TCTTCTGTCA 000560 000561 TATGTAATTT ACAGAGCAAA TACCTACCAG AATGGATAAC TTGAGAGATG TGGAAAGTGA GTTTCTTTGC GCTTATCTAG 000640 000641 TGAGGGTGAT TTTTAGTCAA TAAGCATTTG GTATATgcct gggaatccaa cagctgctat ttagattcag agccagcctt 000720 000721 tatttatcag ctttctgatg ctgaacccat cagtgaactt ctctgtatat ttgattcatc ataaggaaaa tggtgaCGCC 000800 000801 GAGGGTGACT GATTTCCAGG TTTACATCGG TTGCCCCAGG GGAAGTGCCT GGCCCCCATC TGGTCCTTGC TGCTCTAACT 000880 000881 TTGCCCTGTT AATTGAAGAA ATGCAGGTAT AAACACTTCC TGGGTTGTTG CTGGCATTTA TTGTCCTCAC AGTTTACAGA 000960 000961 GAAGCCCATA TTTTCAGCCT CTTCCTCTGC TTTCTGTCAT TTCTGAACCA TCTCACCCGA CCTGGTGTAA TTTTCATTGT 001040 001041 GTGTGAGTTT GCACAGATGT AATTTGGGCC TACATGTGTC CAAAGCCTAA TGCCCACCTC CCACCTCCAC TAGGATCTGG 001120 001121 AGCTCAGGAC CCACTACCTC CCCGGCCCAC TGCAAGCTTG AACATTTGAT GGTGGACACC CCTCCCTGAC TTTGTATTAT 001200 001201 GTGTCACTGG TGTGGGGGTT ACCTTCCCAC TATGTCTCCC AGAAGACATG AGGGCACAGA CTACAGTGCC TGTGGACAGA 001280 001281 GGAGCTGTGG GGATGGAAGT GTGATTGCTT CATTCAAATG CACGCCCCGG TGCGTGTGCG TCTCTTCTGA TGCAGCTCCC 001360 001361 CATGGGTAAG CTCTGTGCTT CTCCACACAG TGGATCAGGA GTGGAAACAT TCTGTCTGTT TAGCACTTGA CGGTTTGGTG 001440 001441 GTGACCTGAT GTCATGGTGA TAATAGAGGC AATGATCCTA ACAGCTTAGA ACTGTTCAGC TTggccgggc ctggtggctc 001520 001521 acacctgtaa tcccagcact ttgggagact gaggtggggg tatcacctga ggtcaggagt ttgagaccag gctggccaac 001600 001601 atggcgaaac cccgtctcta ctaaaaatac aaaaattagc cgggtatggt ggcacacgcc tgtaatccca gctacttggg 001680 001681 aggctgaggc aggagaatcg cttgaacccg gaaggtggag gcttcagtga gctgagatct tgccattgca ctccagcctg 001760 001761 ggtgacggag cgagactctg tctcaaaaaa aaaaaaaaaT TGTTCAGCTT GTGGGTAGGT ATTTGGGAAA CATTATATGT 001840 001841 ATTACCTAGT CTTAGTTATC TGCAGTGGTT TTGTTATTTT TTGCATAAAC TGCTGAGAAT GTTTAATAAT TGTAGATGAT 001920 001921 AGATCACTAG TCACTCTAAA ATCTTCCCAT TTCTTGGTCT AGAGCTGGGG CTGGATCCCT CAGCAACGAG GAGACCTGAA 002000 002001 AACTAGAGGA AAAAAAGCAG GTCCTCCCTA TAAACCACTC ATCTGTGCTC TCTTCCAATT TATTCTCCTT TTGTGTACAT 002080 002081 CATTTTAAGG GGCTATAATC ATCTTGTTCA GACCTCAGGA TATAAAATGA CCCATCTGTA GACCTCCAGC CGTATCCCAA 002160 002161 AGTTGTCTGT TTTGTTTTTT TTTGAAATTC CTGACAAGTT TCAGTTGTAG CTGTGCCCTG AGGAAACATT CCCGATTCCC 002240 002241 GGAGTAGCTT CCAGGTTAAA GTCCTGTAGG CTTCTTCTGT TTTTAGAAAT TCCTATCAGA GAAAGACCTG ATTTTGGATT 002320 002321 TTTAGCTTTA ATGCTTGTGA AAAGCTATAA AAATAATTTT CTACGCCTAG CTTTGAAGTA CTGTTAGTGA GAAATTAAAA 002400 002401 TTCCTTCAGG AGGATTAAAC TGCCATTTCT GTTACCCTAa ttacaaaagt tttggttgtt agaattttct ttactgttca 002480 002481 tgaagaagta ttttatattt tccttcgaca ttcattctct ttagcaggta attttgaact ttagtttctt aaatacccaa 002560 002561 atttggtttt tcctcagtct tctctctgct acagatttct aacttaaCAG GAAAGGCAGT TTTCCTCAAA AAGGGCAAAG 002640 002641 AACAGCGGGA ACAGTAGAGG GCACCTTCAA CCCCAGCATG GAATTGACGT TCCTGCTTCA AAATGAACCA TCACAGCAAT 002720 002721 CTTGGCTTTT TGATTTGGAC CCTCATTTCT CTTATAATTT GAACTTATAT TGGAGAGAAG GGGCCTGTCT CTTAAGCCAG 002800 002801 CTAGTTTTTG TACTGGATAT TTATATATCA TTTCATTTGT TCCTTAGTGT TTTTTCATTT CTATTATGAT TTGTTCTGTG 002880 002881 GGATGTGACT TACCGGTGTG TTTTTCACGT TTATAAAGCT GAATACTTCT GTATGTCAGC TTAGCACCCC TAGCATCAGC 002960 002961 CATGCTACTC TCCTGCTGTG CATAGATGGG GGCCTGTCCC CCTGCTGAAT CTCCTGGGTT CCTGCTGTCA ACACCTGAAG 003040 003041 GTACCCACCA GATGTGTCTG TCACTTCCCT CCATCCACCT CTCTTGTGTT TCTCATGTTT CTGCCTCCCT AGAGACCATT 003120 003121 TCTCTCTAGA Gcagtgcttt ccaatagaaa tacaatgcca gacacatacg tcattttaga ttttctagta gtcactttag 003200 003201 aaaagttaaa aagaggctgg gcatggtagc tcacacctgt aatcccagca ctttgggagg ctgaggtggg cagattagct 003280 003281 gaggtcagga gttcgagacc agcctggcca acatggtgaa accccgtcac tactaaaaat acaaaaatta gccgggtatg 003360 003361 gtagcaggtg cctgggatta cagcctcccg agtaggctga gacatgagaa tcacttgatt ctgggaggtg gaggctgcag 003440 003441 tgagccgagg tcatgtgcac cactgcaatc caaccttggc aacagagcaa gactttgtct cacacaaaaa aaagaaaaga 003520 003521 aagaaaagtt aaaagggagc aggtgaaatt aataatgtgt tttatttcac ctaaaatgtt agtattatcc agaatatcac 003600 003601 ttcaacgtct tatcaaaata aaaattatta atgagatagt ttgcattctt cctctttttt gagatgggct cttgcttttt 003680 003681 ttttggccca ggctggaatg cagtggcacc agcatagctc actgcagcct caaactcctg ggctcgagat cctcctgcct 003760 003761 cagccttcct agtagttagg actacaggca cacaccacca tgcccagcta attgtttttc ttttttgttt gtttgttttt 003840 003841 cttttttttc ttttttcttt tttttttttt tttgagagga aatctcactc tgtcacccag ggtggagtgc aatggcatga 003920 003921 tctcagctca ttgcaacctc cgcctcccag gtttaagtga ttttcctgtc tcagcctccc aagtagctgg |
Predicted Small Protein
Name | NONHSAT066079_smProtein_3452:3661 |
Length | 70 |
Molecular weight | 8179.0573 |
Aromaticity | 0.0434782608696 |
Instability index | 53.7028985507 |
Isoelectric point | 10.5746459961 |
Runs | 9 |
Runs residual | 0.0088965418281 |
Runs probability | 0.0221790417869 |
Amino acid sequence | MCTTAIQPWQQSKTLSHTKKRKERKVKREQVKLIMCFISPKMLVLSRISLQRLIKIKIIN EIVCILPLF |
Secondary structure | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHLEEEEEELLLEEEELLLLHHHHHHHHHHH HHHHHLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHH HHLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTT TTooooooo |