NONHSAT066197
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT066197 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3807 nt |
Genomic location |
chr19+:38779046..38783108 |
Exon number |
2 |
Exons |
38779046..38780920,38781177..38783108 |
Genome context |
|
Sequence |
000001 CAAGATGTGT GTTAGCTTGC TTTGTAGTGC TGGCGGCTGC TGCCCCATTC CTCCTTTATG GTTTAAGGAC TCTGCATCGG 000080
000081 GCGCCTGGGG TGAGTGGTCC CGATGCACTA CCAGGTAGCA AATGCACCCT CGGGGCAGAC CTCAGGCCAT GGACTCTGGG 000160 000161 AGGCTGCTGT GGAGGGGGTA CTGCACCGCA CCCCTGCTGG AGGATGGGAC TCCCCCGGCA GCTGCTACCC ACCGAGTGCA 000240 000241 CTGTAGCTCA GCAGCTGTTG GGCCGGCTGG CTTGCAGAGT GCTGGGGCGT TAGGGTGGTC ACTTTCCAGC TTTGCTAGGC 000320 000321 CTGGAGTCCT GTGCCTGTCC TGGCTTTGCT CTGCCTGGCT CCCTGTTTAT CCTCTGCTAG CCCCCCCACA CACCAGCTCT 000400 000401 GGTTTCCATC TTGTTGGAGA GGAACATGTC CCCCTCACTG TATTAGAAAG TGTGAACAAG ACCGTGTTCC CTATAATATT 000480 000481 AGGAGCTGTG GCAGGCTTGG TTTCTATAGG AACCCTGAGG TGGCGGCAGG GCCACCACAT CCAGCACTCT CAGTGTGTGC 000560 000561 GTAGAGCCCA TTAGGGCTGG GGTGACGTGG CAGAGCCGGC CATGGAAGGG GCTACACACC CCTTCTTAAA GGCGTGTCCA 000640 000641 CACTCCTCAG TGGGCCCTTC CAGACCCAGA CCCAGCTAGG CCTGTGTCCT GTGTCCGGCC CAGCCTCCCT AACACAGATG 000720 000721 TTTGTGTTTC AGCTCCCAGA AGGCAGGATT CTGAAGACCA CTCCAGCGAT ATGTTCAACT ATGAAGGTAA AACTCCAAAG 000800 000801 Aggccaggtg cggtggctca cacctgtaat cccagcgctt tgggaggctg aggtgggcgg atcacgaggt caggatatca 000880 000881 agaccatcct aacatggtga aaccctgtct ctactaaaaa tacgaaaaat tagctggacg tagtggcatg cacctgtagt 000960 000961 cccagctact caggagactg aggcaggaga attgctcaaa gcctgggagg cggagggtgc aatgagccaa gattgcgcca 001040 001041 ctgcactcca gcctgggcaa cagagtgaga ctctgtctca aaaaaaaaaa aaaaaaaaaa aaaaaaaaCT CCGAAGAAAC 001120 001121 TTATATATGG GGCAAAACAT GTATTCTTAG TTGGGTATTG AGAGACACTT GCGGATTTTC ACTGAGGAAG TTGTAGAGCA 001200 001201 GGGCTCTCCC CTCCCCAGGT GGTGGCAGCC CCCTGAGGTT GGGGTCAAGG TGACAGGCCC CACGTGGATG CCGCCAGCAG 001280 001281 TGGGAAGGAG GCTGCGCCTG TGGAGATGTG CGTTAGAGGC GTAGCCTGGC ACGTGGCTCT GCAATTTACA TTGTCCCTGA 001360 001361 Acctctcgcc agcggcttgg ctgtgggcaa gtgactgttg ccccgcctca gagttcccat gtataaaatg aagggtccca 001440 001441 gataggtctc atagagactc agccactgca tgtaaaaggc ctagaacagg gcttggcaga gagcagcctt caaAGCTCCG 001520 001521 AAGCCGTCAC CTGGACCCAA GGAGCAGCGC GTCAGAGCCG CTGCACTGGT CTTGGGTGTA ATTTACAGGC TTCTTTACCA 001600 001601 GAGAGATGTT TCTCCGTCTG CTGGAGCCGC AAGCCTCCTC AGGCACTTTC TGGCTTGCTT CCCCTCCTTG CGGGCCCTAC 001680 001681 TAATTTGTAT TCCCTGGGCT GTCTTACTCC TAGAATACTG CACCGCCAAC GCAGTCACTG GGCCTTGCCG TGCATCCTTC 001760 001761 CCACGCTGGT ACTTTGACGT GGAGAGGAAC TCCTGCAATA ACTTCATCTA TGGAGGCTGC CGGGGCAATA AGAACAGCTA 001840 001841 CCGCTCTGAG GAGGCCTGCA TGCTCCGCTG CTTCCGCCAG CAGGAGAATC CTCCCCTGCC CCTTGGCTCA AAGGGTAAGT 001920 001921 GGCCCCTTAC CCTCCTCCTG CCATCAGCCT GCCTCCTCCC TTCCTTGACT GAGCTCAGCC CTGCCCAGCT GTGGTTTACA 002000 002001 TTATCCTTCA CTGTGAACAT CATCTTGGCA GAAAGTCATG TTTCTGCGTG AGAATGGCGA GGTGGTGGTT TGTCCCACCG 002080 002081 TTCAGTGTAC ACAGTTGGGG CTGGAGTGAG TCAGTCACAA GGCAGGCCCT GCCCAGGCGG CGTGGGTGAC TGGGGATGAG 002160 002161 GTCTTCCTGT TGAGCATTTG AGGACTGCTG CACACGGGCC TGAGGCTGGC CTGAGGTGTG GAGGGAGCGC TGCTATGTGG 002240 002241 GGCATAAGAG TTGGTCACGG GTGACAGGAC GGAGGACCAC GGGCCAGGGT GTTTCCCAAC ACAGTCTGGT CTGAGCGGGA 002320 002321 GGCCAGGCCT CTGGCCTGTG TTTCTGAGCT TGAGTTGCAG GTGATAATGT TGGCACAAAA GACCTGCCAT GCCAGTCTGG 002400 002401 CCTCTTTCTC CACCTGTTTC CCGGTGAAGG AGCCAGGACC TGGCCTGCGA GTCTGTCCTG TTCTAGCAGT GAAGCCTGGT 002480 002481 TTGCCAGGCA CGGGGCTGGG AAGCAAGCAG TCTGGGTCTG GAGGGTGGCC CCAAAAAGGC CAACTCTGCA GCTCCACAGC 002560 002561 CACATGGGGG AGGCTGCCAC AGGTCACACT CCTTAGCCGG ATCCCCTCCT GAAGAAAAGC ATCTGAGCTG ACCAGCGAGA 002640 002641 CTGCAGTGGG GCAGACACTA TTAAATTTGC TGGCACAGCT CTGAGTACCC CCTCGCTTCC ACCCTGACTT CATCCCGCAG 002720 002721 TAGCTCTCAG CCCTCCCAGC CCCTGCAGGG CCACGTCTTT CTCTATTGCC GGTCAGCGTG TGTGTGCACA AAGCCCCTAA 002800 002801 GGTTTCATGT GTACACACCG GTGCTAAGTG TTTTTTACAC CCTTGTGCAT CTCTCGGCCT GGGGCTCCTG TGCAGGTTGC 002880 002881 CCTGAGAGTT GGGTTTTTAG TTCAAAAAGA AGGAACACAG ATGACTACTC TGCTGGCGAC ACGGCCACTC TGCTGGCACG 002960 002961 CACATAGCAT GGCGCCTCCT TTTTTGGGGG ACTCTCCTTG GTGGCATCTC TGGCAGGCTG TGTCCTCTCC AGCTGCAGTT 003040 003041 CTGGACCCTG TCTGGGTTGG GGAGGGGCAT TTGGTCCTCA GGCTGAGCCC ACCTGGATTC CCCAGGCCCT TGGTGAGCGC 003120 003121 CACTCTGGCT GCAACTCCCC TTGCCTGGCC CGTCCTGAGG CCCCTCTCTC GTCCTCAGTG GTGGTTCTGG CGGGGCTGTT 003200 003201 CGTGATGGTG TTGATCCTCT TCCTGGGAGC CTCCATGGTC TACCTGATCC GGGTGGCACG GAGGAACCAG GAGCGTGCCC 003280 003281 TGCGCACCGT CTGGAGCTCC GGAGATGACA AGGAGCAGCT GGTGAAGAAC ACATATGTCC TGTGACCGCC CTGTCGCCAA 003360 003361 GAGGACTGGG GAAGGGAGGG GAGACTATGT GTGAGCTTTT TTTAAATAGA GGGATTGACT CGGATTTGAG TGATCATTAG 003440 003441 GGCTGAGGTC TGTTTCTCTG GGAGGTAGGA CGGCTGCTTC CTGGTCTGGC AGGGATGGGT TTGCTTTGGA AATCCTCTAG 003520 003521 GAGGCTCCTC CTCGCATGGC CTGCAGTCTG GCAGCAGCCC CGAGTTGTTT CCTCGCTGAT CGATTTCTTT CCTCCAGGTA 003600 003601 GAGTTTTCTT TGCTTATGTT GAATTCCATT GCCTCTTTTC TCATCACAGA AGTGATGTTG GAATCGTTTC TTTTGTTTGT 003680 003681 CTGATTTATG GTTTTTTTAA GTATAAACAA AAGTTTTTTA TTAGCATTCT GAAAGAAGGA AAGTAAAATG TACAAGTTTA 003760 003761 ATAAAAAGGG GCCTTCCCCT TTAGAATAAA TTTCAGCATG TGCTTTC |
Predicted Small Protein
Name | NONHSAT066197_smProtein_3494:3745 |
Length | 84 |
Molecular weight | 9817.5526 |
Aromaticity | 0.204819277108 |
Instability index | 43.5361445783 |
Isoelectric point | 9.93548583984 |
Runs | 14 |
Runs residual | 0.0286479250335 |
Runs probability | 0.0672268907563 |
Amino acid sequence | MGLLWKSSRRLLLAWPAVWQQPRVVSSLIDFFPPGRVFFAYVEFHCLFSHHRSDVGIVSF VCLIYGFFKYKQKFFISILKEGK |
Secondary structure | LLLLLHHHHHHHHHLHHHHHLLLHHHHHHLLLLLLEEEEEEEEEEEEELLLLLLLEEEEE EEEEELLEEHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHH HHHHHHHHHHLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTT TTTTTTTTTTooooooooooooo |