NONHSAT066371

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT066371

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6932 nt

Genomic location

chr19+:40818459..40825438

Exon number

2

Exons

40818459..40819345,40819394..40825438

Genome context

Sequence
000001 aaaaagaaaa ggccatacag tttcctctgg ctctcaagaa gctccttctt gaaacccagc tgccatgctg taaggaagca 000080
000081 caggccacag gaagaagtca tgtgtaggca ttctggctgg cagcccaagc tgggccccag ataagtgcca gtactggtta 000160
000161 accaccaggt atctgaggaa gttttaagac gacaccaacc tcagccaaca tcttactaaa atcacatgag cgcccccaag 000240
000241 tgataacagc ctaattaagt ccagtcaacc cctgggacta taagagataa taaaatgatt gttaatttaa gccactaagt 000320
000321 tttggggtga ttagtgatgc attaggtaac tggaacaACt atgccacaat ctgtccattc tccagttgct ggatatttgt 000400
000401 ttccacattt atgctattac aaacagcact gctgtgaaca ttctcataca tgtcttttgc atgtacgtgg aagtttctcc 000480
000481 agggtatata tttgctagga gagtaactgc tgggttggaa agtgtgtcac cttcaacttt accacaacct accaaactat 000560
000561 tttccaagat ggttggtacc agcttacatt ccatcagcaa agtatatcct cccattactc caaatcttcc ctaacacttg 000640
000641 agacttaagg tttttgccag tctactgggt gcacaatggt cttatttcat atccttttaa GGACTGGAAT TTTGTACTGT 000720
000721 TCCCATGAAT TAATCCAAAA TAAGTGCTTA AACCTATAGT AATGTTGCtt ttttaaattt tttatttttt cgagacaggg 000800
000801 gctcactctg ttgcccaggc tagagtgcag tgtcgtgatc acagctcact gcagcttcta cctgttgcgc tcaagtgatc 000880
000881 ctcctgcgct aatttttaaa ttttttgtag agatggagtt tcaccatgtt gcccagtctg gtctggaact cctgggctga 000960
000961 agagatctgc ctgccttggc ctccccaagt gttgggatta caggcatgag ccaccatgcc cagccCGCTT TTCCTTTTTA 001040
001041 AGAATGATTT ACACATTGGG GTTCCATATT AAGGCTTCAT TTTCTAAAAG GGAGTTGTCA ctgggtatga tggctcatgc 001120
001121 ctgtaattcc tacaattaca ggcaagaggc aggaggatca tctgagtcca ggagttcaag gctgcagtaa gctacgattg 001200
001201 tgcctctgca atctggcctg ggtgacagag caagatcctg tctccataat cccagctact cgggaggcag aggctgcagt 001280
001281 gagattacac cactgcactc tggcctgggc aacagaggga gactctgtct caaaaaaaaa aaaggtatag aaaaaaagaa 001360
001361 gggaggctcc agtagcagcc aagcacatct catgcctaga tcttggtttc caccactgtt ctgcaattaa aaggaccagg 001440
001441 ctccttggaa aaatggttgg ctccaggact ggggcaggaa atattcaaga tgagcctgca gcatctctag agcctgaaag 001520
001521 taaggacaca gtaaaaacaa aaacaaggct gggtgcggtg gttcacgcct ataatcccag cactttggga ggctgaggcg 001600
001601 ggcagatcaa ctgaggtcag aagttcaaga ccagcctgaa caatatgatg aaaccccatc tctattaaaa atacaaaaat 001680
001681 tagccaggca tcgtggcatg tgcctgtaat cccagctact caggaggcta aggcaggaga tcacttgaac tcaggaggcg 001760
001761 gaggttgtgg tgagctgaga ttgcaccatt gcactccagc ctgggcaaca agaacgaaac tccgtctcaa aaacaaaaac 001840
001841 aatgggagta taacaagtca aagggactct ggaaccaact gaaagagctc cccatggcca aagtcagact aatgtgagtg 001920
001921 acaaaataaa gaaagtaacg ttggatgata acctcaaata caaagtaaat atccctgagt ccaaactcat aaaaataaat 002000
002001 gactaagtta ctaaatgagg agaagagaca catttccttt gcagaagaat tccaaataat ttatgtaaat cccttgcccc 002080
002081 caaggagatg gagcataaac cccccaactc cttacatgca ggctgtgcag tgaattcctt ccaaagagga caaggtgtaa 002160
002161 agggagaaag aagagtagct ttacaaagtg gagaaacttg acaaacaggt gatcaggatg aacaaaaaca gtggtgaatc 002240
002241 atgtggtcag tgtgtcccct tgatatgtga tgaaatgaca cttccccttt gaggtcttcc tccaaaaaac acgtaactcc 002320
002321 agtgtaatca tgagaaaaat atcagacaaa tcccagctga ggggcatccc ataatatgtc tgaccagaac tcttcgaaac 002400
002401 tatcaaagta ggcatcaaaa ccaaagaaag tctgagcaac tgccctagcc aagaggaacc taaggagaca cgacaactcc 002480
002481 ttacttgtca atataaatgt ctggagccag aatgttatca aatttgataa cataatgtca tatgagatcc tggaacagta 002560
002561 aaatacatta ggcaaaacta aggcaatctg aataaactat agactttagt taatactaat ggatcgatat tatttcatta 002640
002641 attgtgacaa acgtaccacc ccaatgtcag atgtcattaa tattaggagt aactgagcgt ggggtataca gcagctctct 002720
002721 gcactatctt ctcaattttt tctgcaactc taaaactatt ctaaggccag gtgtggtggc tcatgcctgt aatcccaaca 002800
002801 ttttgggagg ctgaggtgag tacatcgctt gagctcagga atctgagacc agctagggca atatagtgag acctcgtctc 002880
002881 tacaagaaaa aaaacaactg gccgggcatg gtggctcacg cctgtaatcc cagcactttg ggaggccgaa gtgagcaaat 002960
002961 cgcctgaggt caggaattcg agaccagcct ggttaacacg gtgaaacccc atatctacta aaaataaaaa attagccagg 003040
003041 catggtggcg catgcctgta atcccagcca ctcaggaggc tgaggcagga gaattgcttg aacccggcag acgcaggcta 003120
003121 cagtgagccg agatcacccc actgcactcc agcctgggcg agagagtgac actccatctc aaaaaaaaaa aaaaatttaa 003200
003201 attaaaaaat tagctgagca tggtggcagg tgcccgtagc cccaggtact caggaggctg aggcaatagg atcacttgag 003280
003281 cctggtaggt ggaggctaca gtgagctggg atcataccac tgcactccag tctgggtgac agagcaagcc cctatctata 003360
003361 aatgaataaa taaagctgtt ctaaaaataa agtctattac aaaaaaAAAA AGAGAGAGAG AGAGAGAGAT TTAGCCCTGA 003440
003441 TTTTGCAAAG GGAAATGTCT CCTCTGCTGC AGGACCCCGA CAGGCCTTCA AAGTTGGGTC TATAGTTGCA GCACTTGCCA 003520
003521 AACTAACTCA GGTCAGATGC CCAAAGGAGG GGTGGAGGTG GCTGCAGCTC AACTCTTGGC TCATCTCAGC AGCAGGGGGC 003600
003601 TTGGGCACTG GAGAAAGGGG GGCTGAGGCT GGCCCAGGCC TTGGCCACTT GCCACAGATA CTGCTAGTTT GCATCTGGCT 003680
003681 TTAGTATCCA CTGATGTGGG CTACCAGAGG AAGGGATGTG TCCAGAGGTG GCCTTGTCTC AGGGCGACCA TCCACACAGA 003760
003761 ATCACTCTGC TGGGCTGCTG CAGGTctggt tctgccattc agcatgagcc ctgggctcgc tgcaccacca tctcctcatc 003840
003841 cgtttatggg atgagaatag gaagaccctg ccttttatga tgttgccctc aggattcgac aagtccaaca acttagccaa 003920
003921 gcgttgattt agtacttcct ggcacacagg tggtagtcaa cgttagctct CAGCATCCCC TGACCCAACT CCTCCAGCGG 004000
004001 TCTCCAGCTG GAAGAGTCCA ACTGCTCTTC ATTCCTTTAT GAAATGGGGT GGTCACTGTG TAAATAAATC ACCTGAAGGA 004080
004081 TGCCAATCAT CTTGGAGGAG AGGCTAGTTC AGATCTGCAA CGGACTCATC ACCAGTATTT GCACTTAAAT AATGTAATGT 004160
004161 AATAATGTGT TCTTCGAAGT CACCCCTGAA TTGATCCCat gtgtaaggaa aattgttcat tctaggacta cttgtaatag 004240
004241 cacgaggtag gaaacaacct gaatttcctt caaaaaggaa ctggttaaat aaattaGACT ACTAAGACAC GTGTATGCTT 004320
004321 GTACATGGAT CCTATATGCT CCTCTGCtgt gtgtgtgtgt gtgtgtgtAC ATCTCACTGG AAAGATTACA CAAGAAATTG 004400
004401 GTTAACATTT GTAGTCTCTG AGGAAGGGAC TAGGGGGCTA GGAGACATGG GAAGATACTT TTCACTGTAG AGACTTTTGT 004480
004481 ATCTTTTGCA TTTTGAACCA TGTGAATGTA TTCTTAAttt ttttttttcg agacaagagt cttgctctgt tgcccaagtg 004560
004561 gagttgcagt ggtgcgatca cagctcactg cagcttcaac ctcctgggct caagggatcc tcccacctca gccttacaag 004640
004641 tagctgggaa tacaggcatg atccaccaAA CGTGGCTGTG AATGTATTAT TTATGCTCAA AAATGCCTAA CAGACAgggc 004720
004721 atggtggctc atgcctgtaa tcccaacact ttggaaagct gagatgggag gattgcttga gactagtagt ttgagaccag 004800
004801 cctgggcaac atagaaagac cctgtctcta aaaaactaaa agtaaaaAGT GCTTAATAGA ATCAGTGAAA AAAAAAAATC 004880
004881 TACCCCTGTG GGTCATGGCT GTTGGGGCGG GCTCGGGAGA ACTGCCAAGT CAAATGTATA ACGGGTGGGC CACTGTGACT 004960
004961 CTGGAGCAGC TGGGAGGTGG AGGCGGCATC GGCTCAGGTC ACAAGGATGT GGCTCTCAAG GCGAGCAGCA TCCTAGCTGC 005040
005041 AAATGCTTCC TAGGACAAGC CAATAAGGTT GGTGCGGACA TCTACACATG GACAACTCTA GAGAGTCCAA ATCCACTGtt 005120
005121 ttttttttgt tttttttttt gagacagtct cactctgtcg cccaggctgg agtgtagtgg tatgatctct gctcacggca 005200
005201 acctccgcct cctgggttca agtgattctc gtgtctcagc ctcccaagta gctgtgatta caggcgtgca ccaacacacc 005280
005281 ggccaatttt tgtattttta gtagagatgg ggttttgcca tgttggccag gctggtcctg aactcctgac ttccaagtga 005360
005361 tccacctgcc tcagcctccc aaagtgctgg gattacaggc gtaagccacc atgccaggtc CAAAATCACT GTCTTAAGAC 005440
005441 CTCCGCCTTG ACCCTTCTCC AAAAGGGCTA TGTTTCAAAT CTGCTATCAA GGCAGCCCAG GTggctgggt gcagtggctc 005520
005521 atgtctgtaa tcccagcact ttgggaggcc ggtgagagag gatcacttga tcccaagagt tcgagcccag catagggtac 005600
005601 atagtgagac ctcgtctcca taaaatataa aataaaataa aaaTTTTTAA AAGGCACCac agggtaggga ttaacgggca 005680
005681 aggattctga agtctgctcc ctggggtcaa actcagtcct gccacccgcc agctgggtga ggccttcagc agttaactcc 005760
005761 cctctctgtg cctctgtaaa gcgcaacaat aagagaatct ccctggcaca gctaaaccct gtgtggtaaa ttacctatat 005840
005841 atgtTTTTAT ATCATTGCAG TTCCTATTAC ACATTGAGAA ATTACCATGG CTCTTAAATT TAGCAACTGG AACTCTTCCA 005920
005921 GTTCACCCCA GCAGTTGTTA AAATTACCTA TGAAGTAGAA TCAGAGGAAA TTATTAGGAA ACAAAGAAGG CTGAAGCTCA 006000
006001 GCAGGGAAAG TGCGCATGTG TGAGCTCTTC CTGGTGGCAA TGACCTGAAG GGGCGGCCCC TGGAATCTGA GGGCCAGCAT 006080
006081 TTGCTGTCCT TTGAGGTCAG GCCTCAGCCA GTCTCAGGAG GGTCTAGCCT GGGCCCCCAC AGAGAAAGGC ATCTATTACT 006160
006161 GCTCTCTACA GTTGTCCCTC ATCCTGAAGT CCGGCCCTTC ACACCCCatc cccagtgcct gggacactgc atgacacaca 006240
006241 gtcagccccc aataTGACGT AACTGAAAAA CTGAAAATAA TGGAtttagg aagatgaaag aagttctgga gatggatgat 006320
006321 ggcgaagggt acacaacagt gtgaaagtac ttaatgccac tgaatggtac agtttaaaat agttaaaatg gtccaggcgc 006400
006401 agtggctcac acctgtaatc ccagcacttt gggaggctga ggcgggcgga tcacctaagg tcaggagttc gagaccagcc 006480
006481 tggccaacgt ggtgaaaccc catctactaa aaatatgaaa attagctggg agtggtggca ggtgcctgta atcccagcta 006560
006561 ccagggaggc tgaggcagga gaatagctgg aaccctggag gtggaggttt cagtgagcca agatcatgac attgtcctcc 006640
006641 agcctgggca acaagagcaa aactctaact caaaaaaaaa ataaacaata aaaataaaat aaaatggtta aaattgtaaa 006720
006721 tttcacgagg tatattttca cacaatgaaa ataaATAAAT AAACGGATGA GATCTAGTCT CATCTTTACC TGCTctctca 006800
006801 ttaattctcc tccaaccccc tgacctctcc taggctgtct ctttttgtca gttcctgttc tctaaacagg gaaagggccc 006880
006881 cagattccct ccaatctcta tgatcccttt ccagctggta ttaccaggcc ct
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Predicted Small Protein

Name NONHSAT066371_smProtein_1043:1189
Length 49
Molecular weight 5402.047
Aromaticity 0.104166666667
Instability index 78.65
Isoelectric point 9.51177978516
Runs 9
Runs residual 0.0219298245614
Runs probability 0.0344265834462
Amino acid sequence MIYTLGFHIKASFSKRELSLGMMAHACNSYNYRQEAGGSSESRSSRLQ
Secondary structure LEEEELEEEEELLLLHHHHHHHHHHHHLLLLHHHHLLLLLLLLLLLLL
PRMN -
PiMo -