NONHSAT066523

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT066523

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1955 nt

Genomic location

chr19+:42656721..42661675

Exon number

2

Exons

42656721..42656858,42659859..42661675

Genome context

Sequence
000001 CTTTTCCCGG AGCCGCACCC AGGTCCCCCA CCATCATGCA CCCCTTACCC AGGCCTCTGA GGGGCCAGGC ACCCCCCACC 000080
000081 ACTCCCCTAC AGCAGGAGAG CTTAGGGAGG CTGAGAGCTT GGACAGCCGG GAGAGGGGGC CGGATCTCTG GATCTCCCCA 000160
000161 GCCTCCAGAT CTCAGTGTGG CTCTCTCTGG AGACAAAAGC TAAGACTCAA CCCACAGGCA ACACTCAACA CAGAGATCCA 000240
000241 GCTCAGAAAA AAAGGAGCTG ACCAGGGAGG AATGGAGAGG CCAAGACACA TAATGAAGAC TAAGAAAAGG AAGAAAGATG 000320
000321 ATGCTGGGGC TGGAGCCAAA GGGAGAGGAA GAGGAAAGGA AGGAAAGCCA GGGGCAGAGA CCTGGCAGGG CAGCGTGAGC 000400
000401 CCAACAACCA CGGGGTGGGG GTGGGGCGCG CATCAAGATT TCTAACAAGC GCAGCTGAAA ACACCCAGGG CCGTTCTCTG 000480
000481 AGGCCTTCTC TCTGCCTACC AGCCCTCACC AGTGCTTCGA AGAGCCCTGA GGAACGTCTC TCTATTTGAA GTCAGAGCCG 000560
000561 AGTGCCTGCT CTCGGCACCT GGGGCTCCAT GCTTACCAGG ATGGTGGGTA CTTGACCTTC ATTTGCTGTG GGACTGTCAG 000640
000641 GGATTCCAGG GACCCACTGG TCCCCGAACT GGCTCAGAGA TGCAAGCCAC TTTTACCTCC TACACATCTA TAATCCCCAC 000720
000721 CCCATGGCTG ACAAATATTC CCAGTCCACA GCTGTCTCCA CCCACCCAGT GACAGAGCAC AGGCAGCCAA AAGGATCAAG 000800
000801 CAATCTCTTG CCACCTCCCA GCACCCCAGA ATGCTAAACA GACCCTCACA TCTGGACTCC ACATCCAGCG AGGAGTGCCC 000880
000881 CTGCCCACCA CCCAGATCAC ACAGCTGCCA GTTACAGACC ACCCTATAGG TCCCACCACA CGGCCATAGC CCACCAGCAT 000960
000961 CCCAGAGCTG CCTCTACACT AAAGCTCTGT CCCAGCCCAG CCATCCTTCA AGCCACATCT GGAATAGCAC ACACCCTATT 001040
001041 CCACTAGCCA AAGCCCCCAG GGGTGTAATT CAGAAGGAGG CAGACTGGGC CTGGGGCATG TGGACAAGTC CCTGACACCA 001120
001121 CGCCCTGGCT TCTCCGGCTT GTCTGAAGAA CCTGAACTGC CCTTAAGGCC TGCGCCTCCC ATCCCAGGGC AGCCCCCCCG 001200
001201 CCATACCTAC ACTCTTGGCC ATGGGAGAAT GTCCTCATGT GCGGCTAAAC ATCCTCCTCA TGCAGCCTTG AATTCTGTTC 001280
001281 CTTCCACGTC ACCTCACCAG ACCCAGGATG AAAGCCGCTC ACCTAGAGCA AAGCTTCTGC TTCCGAGGCA TTCAGGACTC 001360
001361 CCCTCAGGGT GTGTGAGCAC CCTGGGGCAC ATGCCTGTTG CTTATGTCTG GGTTACCTCT GTGACCCTGG GACCGCTCCA 001440
001441 CATTGAAGGC CGTTGTGTCT TTTTGTGGAA GGATGGAAGG ACAGAAGGGA AGGAGAGACA AAGTGGTACC ACAGCCCTGT 001520
001521 TCTTGCCCTG GCACTTGGAG GGCACCAGAT ACCCAGGGGA CTGTAGCTGG CTGTGAGGAC TCTAAGGCCA GGCCAGCATA 001600
001601 CACAGTCCCC AATAGTGAGT AGGAGCCCAG TCAGTCCACA CCCCTTCCCA TCCACTCGAA ATGTAACTTA GCCCTCGGCT 001680
001681 TCTCCTTACC TTTCAGGAGT TCTCTCCTTA CCCCCAAAGA CTTCCTGAGG ACCCCCTAGG CCAGCCAGCC TACCCCTCTC 001760
001761 TCCCCTAACC CAGCATCCTG CAGTCCCCTG GTTCAGATTG GTGGTGTCTG TGCCTGAACC CCCACGAGCC TGAAAGCCCC 001840
001841 TCAAAGGCCA CATGGGTCTC CCGCCTCTCT GCATCTCCAG ATGGTGGCAC GAGGCCTAGC ACACAAGGAA TCCCAGAAAA 001920
001921 TGTTGGCTGA AGGAATAAAT GGATGGATCT AGGTT
[back to top]

Predicted Small Protein

Name NONHSAT066523_smProtein_35:202
Length 56
Molecular weight 5797.5274
Aromaticity 0.0181818181818
Instability index 67.7854545455
Isoelectric point 11.7052612305
Runs 9
Runs residual 0.0121212121212
Runs probability 0.0453198296336
Amino acid sequence MHPLPRPLRGQAPPTTPLQQESLGRLRAWTAGRGGRISGSPQPPDLSVALSGDKS
Secondary structure LLLLLLLLLLLLLLLLLHHHHLHHHHHHHHLLLLLEEELLLLLLLLEEEELLLLL
PRMN -
PiMo -