NONHSAT066650
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT066650 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2544 nt |
Genomic location |
chr19-:44501048..44506988 |
Exon number |
3 |
Exons |
44501048..44502536,44502551..44503384,44506776..44506988 |
Genome context |
|
Sequence |
000001 TTTCACTCGT CCACCCGCCT GAGCCAACTT GCCCGCGACT CAGAGTGTGT CTGGACTCCG CTTCCTCCAA TGCCAAAGGA 000080
000081 AAATGTCTAT AATCTCACTC TTCAGCGGGA AGCGTTGGAC TCCGCGGTGG TCCTTGACTA CACACACCGC AGTGCCCACC 000160 000161 GGGAACGTAT TCCATATCTC TGAGCGCCTG GTGGGGAATG TGGACTGTGA CCCTGACTGA ATGAAATGTA TCATCAGCAT 000240 000241 GGATTCTGTG ATAAATTACA AGATACAAAC TCAAAAGGAA CTGCTTTCTA TGTGCCTCAT ATTTTAATGT TTCTCCCCTT 000320 000321 TGTGAATGCT TAGGTGAGAC TGTAGTCATG AAAACTGAGT AAAGACTTTA TTACACACAT TACTGAGGCT TCTCTCCAAT 000400 000401 GTGGACATTC TGAAGTTGAA GACTTGAGGC CTGAATGAAG CACATACCAC CCTCCTCATA CTTCCGTAGT TTCTCTCCCG 000480 000481 TGTGGAGCTT CTGAAGCATA ATAAAATTCA AGTGATCCAG CAATTCTATT ACTGGGTATA TCCAAAGGAA AGGAAATTAG 000560 000561 TATGTCGCGG AGATATCTGC ACTCCCAGGT TCATTGTAGC ACTACTCACA ATAGTCAAGA TAAGGAATCC ACCTAAGTGT 000640 000641 CTATCAATAC ATGAATGAAG AAAAGGTGGC ATATATACAC AATGGAATCC TCTTTAGACA TAACAAGGAA ACAAAATTTT 000720 000721 ATCATTTGTG GCAACATGGA TGAGTTTTCA AGGACATTGT TAATATAAGC CAAGCAAAGA AAGAGAAATA CTGACTGTCC 000800 000801 TCACTCATAT GGAAGTTAAA AAAAGTTGAT TTTGTAGTAG AGAGTAGAAC AGTGGATGTA GACAGGCAGG GAAGTGTAGG 000880 000881 AGGTAGGTGA GATGGCCAAA GGTTGGCCAA CAGATACAAA AGAGGTAGAG GGGAAGAATA AGTTCTACTG TTCTGCAGCA 000960 000961 CTAAAGGTGA CTATCATCAA CAATTATTTA CAAATTGCTA AAAATGTGTT GTAGTCTCAC AAATGCACCA CACTGTAACA 001040 001041 GTCTCTCTTG TGATGTATCC CCCGGAGTTC TTAATCTCAC GTCCAATATG ATTAAGAAGC ACAGACACAA GGGTGAAATT 001120 001121 GGAGTAAAAG TTTAATAAGT GAAAGAAAAA AGCTCTCCAC AGTGGAGATG GGGATCCAAA TAAGTTGCCC AGTATGAGGC 001200 001201 TGGGGTCCGG GGTTTTTATG GACTGGGAAG GGGAAGGAAT GCACTTAGCC TGCGGGCTGT CTTGGAGAAA GCGTGATTCA 001280 001281 GCTTGGTCTG GGACCTTGGC CCGGGACCAA TCAGGAACCG AAGTGATGAT TCATAAGGGC TATTCAGCTT GGCCCGGGAC 001360 001361 CAATCAGGAG TTGAAGTGAT TATTCCTAAG GGCTATTCAG CTTGGCCTGG GACCAATCAG GAGCTGAAGT GATGATTTAC 001440 001441 AGAGGCTGGG CTTTTCCTTT TCCACAAAAG AAAGTGCCAA CCTGAACCTA CTGAAGCCCA CTGTGTTCAT GCCCACAAAA 001520 001521 GAAGAAACTT TTTCCTCGGA GCCTGCTGAT TATACAAAGG ACAAAGGCAT TTCTGTGTCT GGTCTTGTTC CCTTAACTGA 001600 001601 GTGAGCCGGA GGTTTGTGCG AGTTTTTACC TGAATGGGCT GGAGGTTCTT CTATCTGTGC AGGCATGGGC ATGTCTCCAG 001680 001681 GCACAATCCC CTGTGCTAGT TCCCTTATCA GTGCCTGTAG CTTGATTGTC TTCCCCAGGC TGCTTTTTGT GTTATGTGGG 001760 001761 GATGAGACAC TGACCCCTTT GGCTGGGGGT CTCCAGGGAC CCTTCCCTTG CTGTCTACCA ACTCCTCTCA AATGGATTTT 001840 001841 GAATTTTCCA ACACAAAGAA ATGGTAAATG TTTGAGGTAA CAGATACACC AATTACACTG ATTGGATCAC TATAAATTGT 001920 001921 ATGCACACAT TAAAATAGCA CGTTGTACCC CATAAATATG AACAGTTATG TGTCATTTAG AAATAATGAT AAAAGTATAT 002000 002001 CCAGATTCAA GCGCCTCTTG TAGCGTCTCC CACAATCCTC ACATTTGGAT GGGTTTTCCC CACTATAGTC TCTCGGCTGG 002080 002081 TCTTTACGGT ATGTCCTGTG TACAAGCCTC TTTCCACAGT CCTCACATTT GAATGGTTTT TTCCGGCAGT GGAGTCTCTT 002160 002161 ATGATTCAAA ATACTTGAGG CCCGGCTAAA GTTCTTCCCA CATTCCTTAC AATTATAAGG TCTCTCTCCC GTGTGGACCC 002240 002241 TCTGGTGCAA GTCAAGATTA AACTTAGTAA CATAGCCCTT CCCACACTCC TCACATTTAT ATGGCTTTTC ACCACTGTGG 002320 002321 GATCTCTGAT GGGAAGACAG TTGTGAATTT GTATAAAATC CCTTCCCACA TTCTTCACAT TTGAAGCTTT TTTCTCCACT 002400 002401 GTGGACTCGC TGATGGTTCA AAAGGCATGA GGACCATCTG AAGCTCTTCC CACATTCTTT ACAATTATAT GGTTTCTCTC 002480 002481 CTGTGTGGAC CACCTGATGC TTATAAAAAT CTAGCCTACC AATAAAGCCT TTTCCACACT GCTC |
Predicted Small Protein
Name | NONHSAT066650_smProtein_1664:1879 |
Length | 72 |
Molecular weight | 7564.0557 |
Aromaticity | 0.0704225352113 |
Instability index | 49.9492957746 |
Isoelectric point | 8.67559814453 |
Runs | 11 |
Runs residual | 0.00637509266123 |
Runs probability | 0.0392879510527 |
Amino acid sequence | MGMSPGTIPCASSLISACSLIVFPRLLFVLCGDETLTPLAGGLQGPFPCCLPTPLKWILN FPTQRNGKCLR |
Secondary structure | LLLLLLLLLLHHHHHHHLLEEELLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLLEEEEL LLLLLLLEELL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLL |
PiMo | ooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiii |