NONHSAT066851

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT066851

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1920 nt

Genomic location

chr19+:46662303..46664555

Exon number

3

Exons

46662303..46663725,46663871..46664138,46664327..46664555

Genome context

Sequence
000001 ATTATTACAA TCTGCACTCT AGAACCACAT GCCCTTTGGA TCCTCACAAC AACTCCATGA AAAAATCGCA GCTGTCACTC 000080
000081 TTCTCTGGTT CTCTTTTGGA GTTTATGGTG CCTGTGCACT TCTGCTAGAT CACGTGAAAA CTGTGGATAT GACTCCAAAT 000160
000161 AGTTCTCCAG GGAGTAAACA AAGTGGTTTG GGGCATCATC TTTTGAAACT TCTAAGGATA CAGTGCCTGG GAAATATAGA 000240
000241 ATTAGAAGGT GTTTAGTAGA AGGGGGATTA AAATAGATGG GAAGAGCCAC CTTCTCTAGT TTCATGTTCA TTGGTAATGG 000320
000321 CCGGTGGTAC TGGAGGCCAT GAGCTTCCTC AAGCCACAAC ATGGAGTAGG ACTTGGCTGC ATTCACTCTC TGATATGGAG 000400
000401 TAGCCCAGGA GAGGAAAAAG GTTATAGTAT AAGGGGAACA TTTTTCATTT GCAAGTACAG AAGACAAAAA CGAACACCCT 000480
000481 TCCTCTTATT TTGCTCACAT AATCTCATTG TCACCTGCCT GTACATGCTT TCAAAAGCTG CCTGTACATG TTTTCACCTG 000560
000561 CCTGTACATG CTTTCAACCA TGGAATATTT GAACTTGGAT CACTATGTTA GTCAGGTGAT TGCATCCATA AAAAAACCTT 000640
000641 CATATTCCAT CATTTTTTTC CATTTCCTTT ATCTCTCAAC CTTCACCCAC AGTCATGGTG TCAGAAACTG CAAAACAAAT 000720
000721 GAGGAGAGCC CCAAATTTTA GACCTACTGT ccgtctctac agaaaataga aaattacctg ggcatggtgg cacatgtctg 000800
000801 tagtctcacc tactcaggaa gctgaagtga gaggatcgtt tgagccctgg agttcaaggc tgcagtgagt caagatggca 000880
000881 ccactgcact ccagtctggg tgacagagta agaccctgtc tcaaaaaaca aaaagcaaac aaacaaaaaa aGACCTACTC 000960
000961 AAGCCCAATC CTATCTCCAA GACAATCCTG CACCCCAGTT CTCCACTTGC CAATCTTACT CAGCTTCCTT CCTCCTTCCT 001040
001041 TATCACCTTA ATCTTAACCA TGGTTAATCT TTAACAGCTG CTCCCTCCTT TTTCCAACTG GTAAACTTCA GCATATTCTT 001120
001121 AGAATCATAA ACGAAGATAT TCCAAGAGTT TTCCCTGCAT TCTCTTTCCT AGAAGGGTCC ATGCTTCTCT GGCCCTGCTG 001200
001201 TCTGGACTCT TAACTGTGTC AGTTAGATCC TATGCAAAGA TAGTTCCAAA CCCAAGCCTT TAGAGCTAAT CTGGAACTAA 001280
001281 GCCTTCCCCA CCCTGGCCTG CCCTCCCTGA GATCAACCTA GTGGCCACAC TTCCAGCCCC ATCCTTAACC TCCTTTCTTT 001360
001361 CTCTCCCAGC TCCTGCTTAT GTGTCAGTCT GTCTCCTCCT CTTGTGTCCA AGGGAAGTCA TCGCTCCCGC TGGCTCAGAA 001440
001441 CCATGGCTGT GCCAGCCGGC ACCCAGGTGT GGAGACAAGA TCTACAACCC CTTGGAGCAG TGCTGTTACA ATGACGCCAT 001520
001521 CGTGTCCCTG AGCGAGACCC GCCAATGTGG TCCCCCCTGC ACCTTCTGGC CCTGCTTTGA GCTCTGCTGT CTTGATTCCT 001600
001601 TTGGCCTCAC AAACGATTTT GTTGTGAAGC TGAAGGTTCA GGGTGTGAAT TCCCAGTGCC ACTCATCTCC CATCTCCAGT 001680
001681 AAATGTGAAA GCAGAAGACG TTTTCCCTGA GAAGACATAG AAAGAAAATC AACTTTCACT AAGGCATCTC AGAAACATAG 001760
001761 GCTAAGGTAA TATGTGTACC AGTAGAGAAG CCTGAGGAAT TTACAAAATG ATGCAGCTCC AAGccattgt atggcccatg 001840
001841 tgggagactg atgggacatg gagaatgaca gtagattatc aggaaataaa taaagtggtt tttccaatgt acacacctgt 001920
[back to top]

Predicted Small Protein

Name NONHSAT066851_smProtein_338:610
Length 91
Molecular weight 10195.9843
Aromaticity 0.133333333333
Instability index 52.6533333333
Isoelectric point 9.13604736328
Runs 11
Runs residual 0.0176366843034
Runs probability 0.0557482616307
Amino acid sequence MSFLKPQHGVGLGCIHSLIWSSPGEEKGYSIRGTFFICKYRRQKRTPFLLFCSHNLIVTC
LYMLSKAACTCFHLPVHAFNHGIFELGSLC
Secondary structure LLLLLLLLLLLLLLLEEEEELLLLLLLLEEEEEEEEEEEEEELLLLLEEEELLLLLLHHH
HHHHHHHHHHHLLLLLLLLLLLEEEELLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHH
HHHHHHHHHLLLLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTT
TTTTTTTTTooooooooooooooooooooo