NONHSAT066851
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT066851 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1920 nt |
Genomic location |
chr19+:46662303..46664555 |
Exon number |
3 |
Exons |
46662303..46663725,46663871..46664138,46664327..46664555 |
Genome context |
|
Sequence |
000001 ATTATTACAA TCTGCACTCT AGAACCACAT GCCCTTTGGA TCCTCACAAC AACTCCATGA AAAAATCGCA GCTGTCACTC 000080
000081 TTCTCTGGTT CTCTTTTGGA GTTTATGGTG CCTGTGCACT TCTGCTAGAT CACGTGAAAA CTGTGGATAT GACTCCAAAT 000160 000161 AGTTCTCCAG GGAGTAAACA AAGTGGTTTG GGGCATCATC TTTTGAAACT TCTAAGGATA CAGTGCCTGG GAAATATAGA 000240 000241 ATTAGAAGGT GTTTAGTAGA AGGGGGATTA AAATAGATGG GAAGAGCCAC CTTCTCTAGT TTCATGTTCA TTGGTAATGG 000320 000321 CCGGTGGTAC TGGAGGCCAT GAGCTTCCTC AAGCCACAAC ATGGAGTAGG ACTTGGCTGC ATTCACTCTC TGATATGGAG 000400 000401 TAGCCCAGGA GAGGAAAAAG GTTATAGTAT AAGGGGAACA TTTTTCATTT GCAAGTACAG AAGACAAAAA CGAACACCCT 000480 000481 TCCTCTTATT TTGCTCACAT AATCTCATTG TCACCTGCCT GTACATGCTT TCAAAAGCTG CCTGTACATG TTTTCACCTG 000560 000561 CCTGTACATG CTTTCAACCA TGGAATATTT GAACTTGGAT CACTATGTTA GTCAGGTGAT TGCATCCATA AAAAAACCTT 000640 000641 CATATTCCAT CATTTTTTTC CATTTCCTTT ATCTCTCAAC CTTCACCCAC AGTCATGGTG TCAGAAACTG CAAAACAAAT 000720 000721 GAGGAGAGCC CCAAATTTTA GACCTACTGT ccgtctctac agaaaataga aaattacctg ggcatggtgg cacatgtctg 000800 000801 tagtctcacc tactcaggaa gctgaagtga gaggatcgtt tgagccctgg agttcaaggc tgcagtgagt caagatggca 000880 000881 ccactgcact ccagtctggg tgacagagta agaccctgtc tcaaaaaaca aaaagcaaac aaacaaaaaa aGACCTACTC 000960 000961 AAGCCCAATC CTATCTCCAA GACAATCCTG CACCCCAGTT CTCCACTTGC CAATCTTACT CAGCTTCCTT CCTCCTTCCT 001040 001041 TATCACCTTA ATCTTAACCA TGGTTAATCT TTAACAGCTG CTCCCTCCTT TTTCCAACTG GTAAACTTCA GCATATTCTT 001120 001121 AGAATCATAA ACGAAGATAT TCCAAGAGTT TTCCCTGCAT TCTCTTTCCT AGAAGGGTCC ATGCTTCTCT GGCCCTGCTG 001200 001201 TCTGGACTCT TAACTGTGTC AGTTAGATCC TATGCAAAGA TAGTTCCAAA CCCAAGCCTT TAGAGCTAAT CTGGAACTAA 001280 001281 GCCTTCCCCA CCCTGGCCTG CCCTCCCTGA GATCAACCTA GTGGCCACAC TTCCAGCCCC ATCCTTAACC TCCTTTCTTT 001360 001361 CTCTCCCAGC TCCTGCTTAT GTGTCAGTCT GTCTCCTCCT CTTGTGTCCA AGGGAAGTCA TCGCTCCCGC TGGCTCAGAA 001440 001441 CCATGGCTGT GCCAGCCGGC ACCCAGGTGT GGAGACAAGA TCTACAACCC CTTGGAGCAG TGCTGTTACA ATGACGCCAT 001520 001521 CGTGTCCCTG AGCGAGACCC GCCAATGTGG TCCCCCCTGC ACCTTCTGGC CCTGCTTTGA GCTCTGCTGT CTTGATTCCT 001600 001601 TTGGCCTCAC AAACGATTTT GTTGTGAAGC TGAAGGTTCA GGGTGTGAAT TCCCAGTGCC ACTCATCTCC CATCTCCAGT 001680 001681 AAATGTGAAA GCAGAAGACG TTTTCCCTGA GAAGACATAG AAAGAAAATC AACTTTCACT AAGGCATCTC AGAAACATAG 001760 001761 GCTAAGGTAA TATGTGTACC AGTAGAGAAG CCTGAGGAAT TTACAAAATG ATGCAGCTCC AAGccattgt atggcccatg 001840 001841 tgggagactg atgggacatg gagaatgaca gtagattatc aggaaataaa taaagtggtt tttccaatgt acacacctgt 001920 |
Predicted Small Protein
Name | NONHSAT066851_smProtein_338:610 |
Length | 91 |
Molecular weight | 10195.9843 |
Aromaticity | 0.133333333333 |
Instability index | 52.6533333333 |
Isoelectric point | 9.13604736328 |
Runs | 11 |
Runs residual | 0.0176366843034 |
Runs probability | 0.0557482616307 |
Amino acid sequence | MSFLKPQHGVGLGCIHSLIWSSPGEEKGYSIRGTFFICKYRRQKRTPFLLFCSHNLIVTC LYMLSKAACTCFHLPVHAFNHGIFELGSLC |
Secondary structure | LLLLLLLLLLLLLLLEEEEELLLLLLLLEEEEEEEEEEEEEELLLLLEEEELLLLLLHHH HHHHHHHHHHHLLLLLLLLLLLEEEELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHH HHHHHHHHHLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTT TTTTTTTTTooooooooooooooooooooo |