NONHSAT066900
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT066900 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2536 nt |
Genomic location |
chr19+:47111219..47114038 |
Exon number |
3 |
Exons |
47111219..47111597,47111739..47112238,47112382..47114038 |
Genome context |
|
Sequence |
000001 AATAGCTTca cctagcacag tgttgatgtt caataactgt tgaatgaaGG TTGGAAGGGC TTTGCCCTGA GCACTGAGGA 000080
000081 GAGAGAGCTG GTTGCGTGGG ACTTGAAGTC TGTCTCAGTT TCTTTAGGTG GGACTGATGC CCTTGGCCTT CCTCCAGGGA 000160 000161 AGGCATCCAG CATCCAGAGG TAAGGATTCT CCTGTGGACC TTGTGACCTC TGACTCCTCC CCCTTCTTCC CCCAGAGTTC 000240 000241 AAGGAGGCCT TCTCCCTCTT TGACAAGGAT GGAGATGGCA CTATCACCAC CAAGGAGTTG GGGACAGTGA TGAGATCCCT 000320 000321 GGGACAGAAC CCCACTGAAG CAGAGCTGCA GGATATGATC AATGAGGTGG ATGCAGATGG GAACGGGACC ATTGACTTCC 000400 000401 CGGAGTTCCT GACCATGATG GCCAGAAAGA TGAAGGACAC AGACAGTGAG GAGGAGATCC GAGAGGCGTT CCGTGTCTTT 000480 000481 GACAAGGTAA GCAGCCCTCT CCAGGGGCGG CTCTGAGACT GACGCCAGCC TTCAGGCAGA CAGGCGGAAC TGGAGCCACG 000560 000561 GAGCTACCAC TTCCAGGAGG TCCGGGTCCC GGTGCCAGCC TCATTGCCAA CCTGCTCTGC CACCTCAGGC AGCCTCCCTC 000640 000641 ACTGTGCTCA CTGCTGAGGG ATGGTGATGA CAGCCACCCC TCTCACTGCC TCTCTCCCCA CCGGGAGAAG TGCCCAGTGA 000720 000721 AAGGCTTTAT CCCCAACCCC CAGGATGGGA ATGGCTACAT CAGCGCCGCA GAGCTGCGTC ACGTAATGAC GAACCTGGGG 000800 000801 GAGAAGCTGA CCGATGAGGA GGTGGATGAG ATGATCAGGG AGGCTGACAT CGATGGAGAT GGCCAGGTCA ATTATGAAGA 000880 000881 GTTTGTACAG ATGATGACTG CAAAGTGAAG GCCCCCCGGG CAGCTGGCGA TGCCCGTTCT CTTGATCTCT CTCTTCTCGC 000960 000961 GCGCGCACTC TCTCTTCAAC ACTCCCCTGC GTACCCCGGT TCTAGCAAAC ACCAATTGAT TGACTGAGAA TCTGATAAAG 001040 001041 CAACAAAAGA TTTGTCCCAA GCTGCATGAT TGCTCTTTCT CCTTCTTCCC TGAGTCTCTC TCCATGCCCC TCATCTCTTC 001120 001121 CTTTTGCCCT CGCCTCTTCC ATCCATGTCT TCCAAGGCCT GATGCATTCA TAAGTTGAAG CCCTCCCCAG ATCCCCTTGG 001200 001201 GGAGCCTCTG CCCTCCTCCA GCCCGGATGG CTCTCCTCCA TTTTGGTTTG TTTCCTCTTG TTTGTCATCT TATTTTGGGT 001280 001281 GCTGGGGTGG CTGCCAGCCC TGTCCCGGGA CCTGCTGGGA GGGACAAGAG GCCCTCCCCC AGGCAGAAGA GCATGCCCTT 001360 001361 TGCCGTTGCA TGCAACCAGC CCTGTGATTC CACGTGCAGA TCCCAGCAGC CTGTTGGGGC AGGGGTGCCA AGAGAGGCAT 001440 001441 TCCAGAAGGA CTGAGGGGGC GTTGAGGAAT TGTGGCGTTG ACTGGATGTG GCCCAGGAGG GGGTCGAGGG GGCCAACTCA 001520 001521 CAGAAGGGGA CTGACAGTGG GCAACACTCA CATCCCACTG GCTGCTGTTC TGAAACCATC TGATTGGCTT TCTGAGGTTT 001600 001601 GGCTGGGTGG GGACTGCTCA TTTGGCCACT CTGCAAATTG GACTTGCCCG CGTTCCTGAA GCGCTCTCGA GCTGTTCTGT 001680 001681 AAATACCTGG TGCTAACATC CCATGCCGCT CCCTCCTCAC GATGCACCCA CCGCCCTGAG GGCCCGTCCT AGGAATGGAT 001760 001761 GTGGGGATGG TCGCTTTGTA ATGTGCTGGT TCTCTTTTTT TTTCTTTCCC CTCTATGGCC CTTAAGACTT TCATTTTGTT 001840 001841 CAGAACCATG CTGGGCTAGC TAAAGGGTGG GGAGAGGGAA GATGGGCCCC ACCACGCTCT CAAGAGAACG CACCTGCAAT 001920 001921 AAAACAGTCT TGTCGGCCAG CTGCCCAGGG GACGGCAGCT ACAGCAGCCT CTGCGTCCTG GTCCGCCAGC ACCTCCCGCT 002000 002001 TCTCCGTGGT GACTTGGCGC CGCTTCCTCA CATCTGTGCT CCGTGCCCTC TTCCCTGCCT CTTCCCTCGC CCACCTGCCT 002080 002081 GCCCCCATAC TCCCCCAGCG GAGAGCATGA TCCGTGCCCT TGCTTCTGAC TTTCGCCTCT GGGACAAGTA AGTCAATGTG 002160 002161 GGCAGTTCAG TCGTCTGGGT TTTTTCCCCT TTTCTGTTCA TTTCATCTGG CTCCCCCCAC CACCTCCCCA CCCCACCCCC 002240 002241 CACCCCCTGC TTCCCCTCAC TGCCCAGGTC GATCAAGTGG CTTTTCCTGG GACCTGCCCA GCTTTGAGAA TCTCTTCTCA 002320 002321 TCCACCCTCT GGCACCCAGC CTCTGAGGGA AGGAGGGATG GGGCATAGTG GGAGACCCAG CCAAGAGCTG AGGGTAAGGG 002400 002401 CAGGTAGGCG TGAGGCTGTG GACATTTTCG GAATGTTTTG GTTTTGTTTT TTTTAAACCG GGCAATATTG TGTTCAGTTC 002480 002481 AAGCTGTGAA GAAAAATATA TATCAATGTT TTCCAATAAA ATACAGTGAC TACCTG |
Predicted Small Protein
Name | NONHSAT066900_smProtein_1226:1453 |
Length | 76 |
Molecular weight | 7884.1147 |
Aromaticity | 0.0533333333333 |
Instability index | 83.2226666667 |
Isoelectric point | 9.24493408203 |
Runs | 11 |
Runs residual | 0.0022695035461 |
Runs probability | 0.0240400828636 |
Amino acid sequence | MALLHFGLFPLVCHLILGAGVAASPVPGPAGRDKRPSPRQKSMPFAVACNQPCDSTCRSQ QPVGAGVPREAFQKD |
Secondary structure | LEELLLLLLHHHHHHHLLLLEEELLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLL LLLLLLLLLHHHLLL |
PRMN | - |
PiMo | - |