NONHSAT066952

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT066952

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1745 nt

Genomic location

chr19-:47724081..47725825

Exon number

1

Exons

47724081..47725825

Genome context

Sequence
000001 cactgcgccg ggccTCTGTA CTCTTTTTAG TATTGCCTTT AATTTTTACC AGTCGGGAGC CTTTCCTAGG ACCTAGCCTC 000080
000081 CTGCCTGCCC ACTtcctagg atgttggagc tgagagggtc ctagagacca ccttgtTTTC ATCCTGCCAC TGGAGAGGGG 000160
000161 GCAGGGGTTT CACTCGGCGT TGCCTAGAGG TGCTTCTGTT GAAGCCTCTG CAATGGGGGG GGCTCTTCCC AGTTCTCCTC 000240
000241 CTTCCACAGA TTGTTCTAGA ACTGCCAAGA CTGTGGGCAC CCTGCTCCTT TCTCCTCATC TTGCCAGCCC TGTAGGGAGG 000320
000321 GGCAGGATAG GTTGCAGTCC ATCCTTCAGC CCCTTGGGGG ATGTCTTTCT CAAATGTACA ACAGAGACGG GGCAGTCACA 000400
000401 GCTAATGTGC CACGCACTCG CTTGGTGCCC AGCTCTCTGC TGAAGGCATT CCGTGTTTGT CCTCTGCCTC CAGGTCTCAT 000480
000481 GTCCTGGATG AGGATGTGAC CTCCGAGACA TGGACATTAG CCCAGGCGGG GGGAGGAGCT GGAATAGGGT GGGCGAGACT 000560
000561 GTCGCCTCGC TGCCCCTGGA GCTGACCATC CCCACTCCCA TCACCATACT CAGTCCCCTG CTAACTGCCC CTTCTCTCTC 000640
000641 TTTTCCCCAG AGACAAGAGG AGCAGCAGCG GCACCGCCCC TCACCCTGGA GGGTCCTGTA CAATCTCATC ATGGGACTCC 000720
000721 TGCCCTTACC CAGGGGCCAC AGAGCCCCCG AGATGGAGCC CAATTAGGTG CCTGCACCCG CCCGGTGGAC GTCAGGGACT 000800
000801 CGGGGGGCAG GCCCCTCCCA CCTCCTGACA CCCTGGCCAG CGCGGGGGAC TTTCTCTGCA CCATGTAGCA TACTGGACTC 000880
000881 CCAGCCCTGC CTGTCCCGGG GGCGGGCCGG GGCAGCCACT CCAGCCCCAG CCCAGCCTGG GGTGCACTGA CGGAGATGCG 000960
000961 GACTCCTGGG TCCCTGGCCA AGAAGCCAGG AGAGGGACGG CTGATGGACT CAGCATCGGA AGGTGGCGGT GACCGAGGGG 001040
001041 GTGGGGACTG AGCCGCCCGC CTCTGCCGCC CACCACCATC TCAGGAAAGG CTGTTGTGCT GGTGCCCGTT CCAGCTGCAG 001120
001121 GGGTGACACT GGGAGGGGGG GGCTCTCCTC TCGGTGCTCC TTCACTCTGG GCCTGGCCTC AGGCCCCTGG TGCTTCCCCC 001200
001201 CCTCCTCCTG GGAGGGGGCC CGTGAAGAGC AAATGAGCCA AACGTGACCA CTAGCCTCCT GGAGCCAGAG AGTGGGGCTC 001280
001281 GTTTGCCGGT TGCTCCAGCC CGGCGCCCAG CCATCTTCCC TGAGCCAGCC GGCGGGTGGT GGGCATGCCT GCCTCACCTT 001360
001361 CATCAGGGGG TGGCCAGGAG GGGCCCAGAC TGTGAATCCT GTGCTCTGCC CGTGACCGCC CCCCGCCCCA TCAATCCCAT 001440
001441 TGCATAGGTT TAGAGAGAGC ACGTGTGACC ACTGGCATTC ATTTGGGGGG TGGGAGATTT TGGCTGAAGC CGCCCCAGCC 001520
001521 TTAGTCCCCA GGGCCAAGCG CTGGGGGGAA GACGGGGAGT CAGGGAGGGG GGGAAATCTC GGAAGAGGGA GGAGTCTGGG 001600
001601 AGTGGGGAGG GATGGCCCAG CCTGTAAGAT ACTGTATATG CGCTGCTGTA GATACCGGAA TGAATTTTCT GTACATGTTT 001680
001681 GGTTAATTTT TTTTGTACAT GATTTTTGTA TGTTTCCTTT TCAATAAAAT CAGATTGGAA CAGTG
[back to top]

Predicted Small Protein

Name NONHSAT066952_smProtein_509:766
Length 86
Molecular weight 9516.9022
Aromaticity 0.0470588235294
Instability index 74.8658823529
Isoelectric point 8.52581787109
Runs 11
Runs residual 0.00713012477718
Runs probability 0.043720190779
Amino acid sequence MDISPGGGRSWNRVGETVASLPLELTIPTPITILSPLLTAPSLSFPQRQEEQQRHRPSPW
RVLYNLIMGLLPLPRGHRAPEMEPN
Secondary structure LLLLLLLLLLLLLLLHHHLLLLEEEELLLLEEEELLLLLLLLLLLLLLHHHHHHLLLLLH
HHHHHHHHLLLLLLLLLLLLLLLLL
PRMN -
PiMo -