NONHSAT066952
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT066952 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1745 nt |
Genomic location |
chr19-:47724081..47725825 |
Exon number |
1 |
Exons |
47724081..47725825 |
Genome context |
|
Sequence |
000001 cactgcgccg ggccTCTGTA CTCTTTTTAG TATTGCCTTT AATTTTTACC AGTCGGGAGC CTTTCCTAGG ACCTAGCCTC 000080
000081 CTGCCTGCCC ACTtcctagg atgttggagc tgagagggtc ctagagacca ccttgtTTTC ATCCTGCCAC TGGAGAGGGG 000160 000161 GCAGGGGTTT CACTCGGCGT TGCCTAGAGG TGCTTCTGTT GAAGCCTCTG CAATGGGGGG GGCTCTTCCC AGTTCTCCTC 000240 000241 CTTCCACAGA TTGTTCTAGA ACTGCCAAGA CTGTGGGCAC CCTGCTCCTT TCTCCTCATC TTGCCAGCCC TGTAGGGAGG 000320 000321 GGCAGGATAG GTTGCAGTCC ATCCTTCAGC CCCTTGGGGG ATGTCTTTCT CAAATGTACA ACAGAGACGG GGCAGTCACA 000400 000401 GCTAATGTGC CACGCACTCG CTTGGTGCCC AGCTCTCTGC TGAAGGCATT CCGTGTTTGT CCTCTGCCTC CAGGTCTCAT 000480 000481 GTCCTGGATG AGGATGTGAC CTCCGAGACA TGGACATTAG CCCAGGCGGG GGGAGGAGCT GGAATAGGGT GGGCGAGACT 000560 000561 GTCGCCTCGC TGCCCCTGGA GCTGACCATC CCCACTCCCA TCACCATACT CAGTCCCCTG CTAACTGCCC CTTCTCTCTC 000640 000641 TTTTCCCCAG AGACAAGAGG AGCAGCAGCG GCACCGCCCC TCACCCTGGA GGGTCCTGTA CAATCTCATC ATGGGACTCC 000720 000721 TGCCCTTACC CAGGGGCCAC AGAGCCCCCG AGATGGAGCC CAATTAGGTG CCTGCACCCG CCCGGTGGAC GTCAGGGACT 000800 000801 CGGGGGGCAG GCCCCTCCCA CCTCCTGACA CCCTGGCCAG CGCGGGGGAC TTTCTCTGCA CCATGTAGCA TACTGGACTC 000880 000881 CCAGCCCTGC CTGTCCCGGG GGCGGGCCGG GGCAGCCACT CCAGCCCCAG CCCAGCCTGG GGTGCACTGA CGGAGATGCG 000960 000961 GACTCCTGGG TCCCTGGCCA AGAAGCCAGG AGAGGGACGG CTGATGGACT CAGCATCGGA AGGTGGCGGT GACCGAGGGG 001040 001041 GTGGGGACTG AGCCGCCCGC CTCTGCCGCC CACCACCATC TCAGGAAAGG CTGTTGTGCT GGTGCCCGTT CCAGCTGCAG 001120 001121 GGGTGACACT GGGAGGGGGG GGCTCTCCTC TCGGTGCTCC TTCACTCTGG GCCTGGCCTC AGGCCCCTGG TGCTTCCCCC 001200 001201 CCTCCTCCTG GGAGGGGGCC CGTGAAGAGC AAATGAGCCA AACGTGACCA CTAGCCTCCT GGAGCCAGAG AGTGGGGCTC 001280 001281 GTTTGCCGGT TGCTCCAGCC CGGCGCCCAG CCATCTTCCC TGAGCCAGCC GGCGGGTGGT GGGCATGCCT GCCTCACCTT 001360 001361 CATCAGGGGG TGGCCAGGAG GGGCCCAGAC TGTGAATCCT GTGCTCTGCC CGTGACCGCC CCCCGCCCCA TCAATCCCAT 001440 001441 TGCATAGGTT TAGAGAGAGC ACGTGTGACC ACTGGCATTC ATTTGGGGGG TGGGAGATTT TGGCTGAAGC CGCCCCAGCC 001520 001521 TTAGTCCCCA GGGCCAAGCG CTGGGGGGAA GACGGGGAGT CAGGGAGGGG GGGAAATCTC GGAAGAGGGA GGAGTCTGGG 001600 001601 AGTGGGGAGG GATGGCCCAG CCTGTAAGAT ACTGTATATG CGCTGCTGTA GATACCGGAA TGAATTTTCT GTACATGTTT 001680 001681 GGTTAATTTT TTTTGTACAT GATTTTTGTA TGTTTCCTTT TCAATAAAAT CAGATTGGAA CAGTG |
Predicted Small Protein
Name | NONHSAT066952_smProtein_509:766 |
Length | 86 |
Molecular weight | 9516.9022 |
Aromaticity | 0.0470588235294 |
Instability index | 74.8658823529 |
Isoelectric point | 8.52581787109 |
Runs | 11 |
Runs residual | 0.00713012477718 |
Runs probability | 0.043720190779 |
Amino acid sequence | MDISPGGGRSWNRVGETVASLPLELTIPTPITILSPLLTAPSLSFPQRQEEQQRHRPSPW RVLYNLIMGLLPLPRGHRAPEMEPN |
Secondary structure | LLLLLLLLLLLLLLLHHHLLLLEEEELLLLEEEELLLLLLLLLLLLLLHHHHHHLLLLLH HHHHHHHHLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |