NONHSAT066972
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT066972 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1753 nt |
Genomic location |
chr19+:47987539..47999639 |
Exon number |
3 |
Exons |
47987539..47987781,47996704..47996858,47998285..47999639 |
Genome context |
|
Sequence |
000001 AGCTGCCGGC GTTGCCCTCT CCCAAGATGG CGGCCAGGTC GCCTGCTCGG GCCTCCCAGG CGACTTTGCC CCACTGCGCC 000080
000081 CGCGCTCTCT TCTCCTTTCC ATTTCTGGAC CAAGGGGCTG CCATAAGGAG TCTGTGACTA GAGATGGGAG GTGGTGGCCA 000160 000161 CGGCCTCTCG CTGTATGCTG TGTGGAAGGT CGAATCATCA TCATCATAAA ACTTAATATT GCCCTTATGT GCCAGGAACT 000240 000241 ACTATCTCAG CAATGGAGAT GTGGTGCTTG GCCGCAATCG TGAATCGGCC CTGGAGGGGA CACAGGAAGG GGCTGCCTGC 000320 000321 GACTCATGAC CTCCTGCGTG CCTGCCTGCT GACCTATGAC CCTTCAAGTT CCCACCCCTC AGCCACGCCT GTGAGGAGGG 000400 000401 TCTTGTTTTG TCGCCTACGC TGGAGTGCAG TGGTGTGATC ACAGCTCACT GCAGCCTCAA CTTCCTGGAC TCAAGCGATT 000480 000481 TTCCTGCCTC AACCTCCCAA GAACTAGGAC CCCAGGTGCA TGCCACTACA CCAGGCTAAT TTGTTGTAGA GAGGAGGTCT 000560 000561 TGCTATGTTG CCCAGGCTGG TCTCGAACTC CTGTGCCCAA AAGATCCTCC CACCTCAGCC TCCCAACATG CCAGGATTAC 000640 000641 AGGCATGAGC CACCCTGCCC AGCTCAATAA CCTAAGTTCT ATGAATGAAA ACCATGACTG CCTGTGGAGT GAGGGGGCCG 000720 000721 TCAGGCTGGT GGGGAGCTGG GTGAAGACCC AGCCAGCCCA GGCCAGCTCA GGTGACCTAA TCCCCCCAGC TCCCACTTCC 000800 000801 CCCTCCCCAA GTGGTTTGGC CGCAGAATAA GAACAGTGCT GGGGGTGCTG AAAGAGGGGA CGCAAGGCTG GGGCAATGCA 000880 000881 GTGGGACCCG GGGGTGTCAG GACAAGCAAG CAGCCCTTAC CATGTCTGTG TAGATCTCGA TTGCTCGCAT CAAACAGTTA 000960 000961 ATGGCCTCTG GAGAGAAAGG GAGGTGGGAG GAGACATGAG AAAGTGAAGT CGTTTCAGCA GAAGCTGAGG AGAGGAGGCG 001040 001041 GACGCAGGCG CACCTGGCTG CCAGCAGAGA GATCAATAGG CGCTCAGAGC TGCCAGCGCT GCCACACACT CTCAAGGGGC 001120 001121 TGGGAAGAAG GGGACGGAAT CCCTGAGCCC CAGGAAATCT GGTGAGAGGG CTGACTCTGC AGACTGTGAC TTGCTGGGCA 001200 001201 CATGCTTCTG GGGGAGCCCT TCTCTCCTCA GGCTGCCAGG ATGCTACCAG CTTCCCACAA CCCCAGGGAC AGGGCACAGC 001280 001281 AGTGCTAGGC CAGGATGATG GCCAGACTCC CACGGTGTTT TAAGACAGAC CTGCCAAGGC CCTGCTCTTG AAGGACTGAG 001360 001361 CTGCTGGCAA AGGGGAAGGA GGCATGGGAG GCGGCCAAAC CAGCATCTGA GGTGGTCTTG GAGGCAACAG GGTGCCAGGT 001440 001441 TCTACCTGGG CTCTGCCACC ATCTCTGCAG GATCCTGAGC AGCTTCTGCT CCTGCACCAG GAGGACCTGG ACCTCTGGCA 001520 001521 CGAGGAGGCT GGATGTCATC AACACTGAGC CCTCAGTGTG CTCTCCACTG CCCCCTCTTC CTCGTAGCTC AGCAGTCGGG 001600 001601 AGCCCTCTGC TCAGTCCCTT TAACCTAGTC CTGCCACCCA CCAGCTCCTC AAAGGTTTTG CCAAAAAACC TGAACACACC 001680 001681 AGGATAGCAC TGAGGAAGAA CTGGGCTACC TTTGTTGTAC TATCTCTTGC AAGATTTTAA ATTTGGGAAA GGC |
Predicted Small Protein
Name | NONHSAT066972_smProtein_644:829 |
Length | 62 |
Molecular weight | 6340.9553 |
Aromaticity | 0.0327868852459 |
Instability index | 66.3885245902 |
Isoelectric point | 5.00848388672 |
Runs | 9 |
Runs residual | 0.00527605049934 |
Runs probability | 0.0120905218944 |
Amino acid sequence | MSHPAQLNNLSSMNENHDCLWSEGAVRLVGSWVKTQPAQASSGDLIPPAPTSPSPSGLAA E |
Secondary structure | LLLHHHLLLLLLLLLLLLLHHHHLLEEEELLEEELLLLLLLLLLLLLLLLLLLLLLLLLL L |
PRMN | - |
PiMo | - |