NONHSAT067110
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT067110 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3746 nt |
Genomic location |
chr19+:49310254..49316812 |
Exon number |
3 |
Exons |
49310254..49310656,49311226..49311356,49313601..49316812 |
Genome context |
|
Sequence |
000001 CACCTTGAAA CTGGAGGAGG CATATCTTCT GGGACCACAC AGAAGCCAAG GGACAGAGAG AAGCTTTCGT GCCCAGATCT 000080
000081 GGGTGGAGAA AGAAGTGAGA GAGGGGGTGA GTGGGGCACA GCAGGGGCCC TGGCAGCTCG CTCGCCACCT CCTGCACTTG 000160 000161 GAGGTCCCAC TGGCCTGCCT GTTCTGTCCC AGTTTCAGTC CATTCTAGAC GGGGCAGGTG GTCCTGAAGG AGGCCAAGTC 000240 000241 CCCTCCCTGC CCTGACGAGG GCTCGCTGGA AAGAGCTGAG TCAGCTCCCG CCCCCTCCTC CATGCTGCGG CAAAGTCAAA 000320 000321 CGCAAGCGCC TCCCACCCCA GAGACCTTTG GTCGCAGCCT GGAGATCAGC TCAGACAAGA AAACAACCAG GGAAGGCACA 000400 000401 CAGCCCTGTG GGGAGGCGTT GGGGCGTGAG GTTGAGAGAG ACAGAGTGGC CTGGCCTGGC CTGCCCTGTG AGCTGGGTGA 000480 000481 GTTGGCACTG ATTCTGGAAG ATGGACGTGA ATGGGCGTGG TCACTTGTCG CTAGactctg ggaaacgctg ctgctgtttg 000560 000561 acatcgcaca gtcagaaggg atcgtctcag ccagcctgca gcatctgtca ctttgaccat gagacgctgc ctcgatttcc 000640 000641 aatccaggtg caaagcttca gataggagtt tgggaagcac agcaatcccc atctcttatt tttttcaact ttcattccaa 000720 000721 gaaaatagga ccttgagtcc aattcccaga gctgagactt gaggtCCAAC TCTGCCTTCA CCTGCACCCG GCCCTGGAGG 000800 000801 TCTGGGCCCC TTTATTCCAG CTCCCGCACA GGCTGATGCC CCACCGCACC CCAGGGCTCC GCTCCCCAAA TCACAACCTC 000880 000881 CCCACCCCCA CGCCTCCCTC ATTACAGGGT CCTCCACCAT GTTTCCCTTT TTTTTTTTTT TTTTACCTCC CCGCCAATTA 000960 000961 CTTGCCCCAC CTCATCCGCG TCTACCTGCT CCCCCTCACC CCATTAAAGC CTCGTGCTCC TTTCCAAAGG GCGCCATCCT 001040 001041 CCTCCGCGCC CTGCAGCGGA ACCCCAGGGC GGGAGGAGCG GCGCCGAGTC GGACCGGCTG CAGGCCAGTG GTCTTCCCGG 001120 001121 AAGTGCGCCT CCCCCGGTTA TTTCCCAGAC CCCGGCGCGG GGCTGCGAAC CCACCTGCCC CAGAGCGGCT GCGGCCATGA 001200 001201 TCCGTGCGGC GCGTAACTGT GCCCGCCCGG GGCGCGGCTC CGAAGAGAGA CGTTCCGGCC ACGCCCCGCT CACGCCTCCT 001280 001281 TCTGGGGGAA GGCGGCCGAC CAGCGCCCCA GGCCGTCCCA GCTCCAGGGC GTCGGCAGGG AGCCGGACAC TGCTGCGGGG 001360 001361 CGCAGGCGCT GGTGGGAGGG CAGGACTTGA AATACGGTCC CTgccaggcg aagtggctca ggtctgtaat cttagcactt 001440 001441 tgggaggccg aagcgggcgg attacctgag gtcaggagtt agagaccagc ctggtccaac atgatgaaac cccgtctcta 001520 001521 ctaaaaatac aaaaaattag ccgggcgtgg tggcgggcgc ctgtaatctt agctactcgg aaagctgagg caggagaatt 001600 001601 gcttgaatcg gggaggcaga ggttgcagtg agccgagatg atgccactgc actccagcct gggcgacaga gtgagactcc 001680 001681 gtctcaaaaa aaaaaaaaaa aaaaaGTcct ggcttggtgg ctcacacctg taatcccagc actttggggg ccaaggcggg 001760 001761 tggatcacct gaggccagga gttcaagacc agcctggccg acatggggaa accccgtctc tactaaaaat acaaaaatta 001840 001841 aggccaggca cggtggctta cgcctgtaat cccagcactt tgggaggccg aggtgggcgg atcacaaggt caggagttca 001920 001921 agacccgcct gaccaacatg gtgaaacccc gtctctacta aagatacaaa aattagccgg gtgtggtggt gtgcgcctgt 002000 002001 aatcccagct actagggagg ctgaggcagg agaatcattt gaaccctgga ggcggacgtt gcggtgagcc gagatcgcgc 002080 002081 cactgcattt ccagcctggg tgacagggtg agactccgtc tcaaaataaa taaataaata aaaataaata cataaaaata 002160 002161 caaaaattag tcgagcgtgg tgccgggggc ctgtaatccc agctattcgg gaggctgagg caggagaatc gcttgaaccc 002240 002241 gggaggcgga ggttgcagtg agccgacatt gcaccacagc actccagcct gggcgacaga gtgagactcc gtctcaaatt 002320 002321 aaaaaaaaaa aaaaaaaaTC GTATCCCTCG GCCATCGTGT CTCGGCAATC CTACCCTGGG ACACTCTGTC TCCAAATTCT 002400 002401 ACCCCCACAG TGCCCCCAAG TCCTGTCCCC GGGTCACTAT CCTGCCACCC CTAACAGCCA CAGGCCCAAA CAGCCAAACC 002480 002481 GCGGGACCCT TCCCTCACAG GGCGTCGCCC TGTTTTTCTG CGCTCCGCCC CAGTCCTCCT GCCCCACCCG CCAGCCCCGG 002560 002561 GCTGTAGGGT CGGGGCCCAC TGACAGCTCC CGCCCCCGCC GCGGCCAATC AGCGGTTGGT GCACACGCCC CCCCGGCCAC 002640 002641 AGCCAATCCG CAGCAGCCCT GCAGCTCCAC CCCTCACCTG GGGGACGCCA GCGCACCCGG GCCCTGCCCC CCCCCTGGGT 002720 002721 CCAGCTGGGG AGTCTGCGTC CCCCAGTGCC CTGCGGACCA AAACCCAGGA GTTTCAGCCC CTCCTCCCTC TGATCCAGAT 002800 002801 GTCTCAACCC CCTACTTTCT CTTCCCTTTG GACTTTTCTT GCCAGCCACC TTCCTATTCT ACAGGCAGTG AGAGGAAAAC 002880 002881 TCCTTTTCCC TGAGGGCCAA GAGTAAGAGG GCCTTCTGCG TCTCCCCCTC CATTACCTCC TAATTAGCGC TTAATTTACT 002960 002961 CTCCCCTGCG GGCCTTTAGT TAGCGCGCTG GTGAAGCCAA ACCGCTCTAC CCTTCCCAGG AGCCCCTGGC GACAGCGACA 003040 003041 GGGCTAGCAA CATCAGGCAC CTGCTTGCTG CAAGGCCTGG GGTTGGGGGG CGGGGGGAGC TGCAGTCCTT CAGGGTCGAG 003120 003121 GCAACTTGTG GGTCTGGGGT GCAAGGGCTA AGTGGGGCAG AAGGACTCGT CTAAAGGATG GGAAATAAAT ATAACGATAT 003200 003201 CCTCCTCCTT CTGGCTGCAA ATCGTTTTTA TGGGAACCTG CAGGGTGACC CGGCACCTTG CTAACTGGGC TTAGAGTCTA 003280 003281 AGGGCTTGGG GGCTGCATCT GATACAGGTT GGAGTTTGGG GTGGGAGAGT CCTAGGAAGG GGGCCCCAAG TAGAAATGAG 003360 003361 AGAAATCAGG AAGGGATATC GGGGGCGTCC ACGGGGGTGC TCCGACTGGC CTTGCACCCG TACCCCAGCT CTGCACCCCC 003440 003441 CGTCACGAGC AGTTCAATGC CCGTGCAGAA GTTGGCTTCG GAGGCCAGGA ACACTGCCGC AGCCCCGACC TCAGCGGGCT 003520 003521 GGCCCATGCG GCCCAGTGGC TGGGGAGAAA AGAGGGGGGA AGGAGGTCAA GAGGAGCCCC ACTTGATCGC CATGCCCCCC 003600 003601 ACCCCCATGC CACCTTCTAC CACCTGGATC TGAACCCCAC TTCTACCTGG GCCAGCATGC CCTCTCGGAT TGTGGCCCTA 003680 003681 GGGTCTGGCA TTAAGGCTGC CAGCTCCTCC CACAGCGGGG TCCAGATGTT TCCTGGGGAG ATACTA |
Predicted Small Protein
Name | NONHSAT067110_smProtein_1196:1468 |
Length | 91 |
Molecular weight | 9129.2051 |
Aromaticity | 0.0 |
Instability index | 72.7022222222 |
Isoelectric point | 12.1093139648 |
Runs | 9 |
Runs residual | 0.0398589065256 |
Runs probability | 0.0459184674871 |
Amino acid sequence | MIRAARNCARPGRGSEERRSGHAPLTPPSGGRRPTSAPGRPSSRASAGSRTLLRGAGAGG RAGLEIRSLPGEVAQVCNLSTLGGRSGRIT |
Secondary structure | LHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLLLL EEEEEEEELLLLEEEEEELLLLLLLLLLLL |
PRMN | - |
PiMo | - |