NONHSAT068318
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT068318 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2220 nt |
Genomic location |
chr19-:58664228..58666447 |
Exon number |
1 |
Exons |
58664228..58666447 |
Genome context |
|
Sequence |
000001 GGCGGGTGGG AGTGATGACC TGCACTCCCC AAACCACTGC GGGATAGAAC GGGGCCGAGT GCTCTCAGGG GTGGCCGCTA 000080
000081 CCGGGGCGGC CCGAGACACG GCTGCGGGTT CCAGCCAACA GGCCCGGAGT CGCGGCCTCG GCTCCGCCGT GGGTGCACGG 000160 000161 GCTAGGGCTG CGGGGACTCC TGTGGGCTCC GCGTCTGCGG CTGGGAGGAA TGGGGATCGT CCCCAGATCC CGCCTTCCGG 000240 000241 GCAGGGCCTC CGCTGCCTGC GATCCTGCCC ACAGTCCAAG GATCCTCCTC GCCTCTCGCG GACTGCGGTG TCAGCCGCCC 000320 000321 GAGCCGTTCC CCGGACACCT GGCCAGGTGA CGGCCCCCGA CCTCCGCCTG GGGCGGGGGG GGGGGTGGTC TGCGAGTCCC 000400 000401 CCTCACCCCC AGCAGACGTT CCCGAGCTCA GAAGGAAAAA AAGGACGAGG AAGGGGCTGC TTATGAGTGT GTCGGTGTTG 000480 000481 ATTTAGTAGT TGTGGAATGT GAGCCCTGGG GAAATAAGTG GAAGAGGCAT GGACCGTGTG GCTCCACTGG GGCGTTCGCG 000560 000561 AATGCCTCCT GGAGGAGGAG ACCAACCAGA AAGAAGAGGC AGCGTCCAGC AACTGGACAA AGGCCAGAGG GCCTTTCTGG 000640 000641 CAAGAGGACT GGGGTGAGCA GAAGCTGATC CGGCTCTTTA TCCCTGGGCG CAAGTGCTGT GTGGCATAGG TCAGTGAAGG 000720 000721 CCTGAAAGGG ATGTTGAGCC AGCAGCAAAA GGCCTTGAGT GCCCCATTAA ATAAGTTACA gctgtggctg acgcctgtaa 000800 000801 tcccggcact ttgggtggcc caagcgggcg gattgcctga gctcaggggt tgtagaccag cctggccaac atggtgaaac 000880 000881 cccgtctcta ctaaaaatac aaaaattagc cgcgcgtggt ggcacgtgcc tgtaatccct gctacttggg aggctgaaac 000960 000961 aggagaatcg cttgaaccgg ggatgcagag tttggaggct gcagtgagct gagatcacgc cactgcaccc cagcctgggc 001040 001041 gatagagcaa gactgtctca aaaaaaaaaa aaaaTCACAT ATGTTggcca ggcagggtgg atcacgcctg taacgccagc 001120 001121 actttgggag gctgaggatt acttgagccc tggagtttga gagcagcctg ggtaaaatag tgagacccca tctgtactaa 001200 001201 aaaaattagc caggcatggt ggtgtacacc tgtagtccca gcaactgggg aggtcgagat gggaggattg cttgagccca 001280 001281 ggaggtcaag gctgcagtgg gctatgatca tgccactgga ctacatcctg gacagcaaag caagacccca tttctaagag 001360 001361 aaaaaaaaaG TGCCATTTTG TAAATGACTT CTGGGATGCT TATCTTGATG TAGAAAGTCT CCTACCCCAA GAACAAACAG 001440 001441 ATAATTCCTG AACAGGGATT GGCAAACAAT GGCCTCAGTG Ggccttctgt ttctgtaaag ttttattgga atgcagtcac 001520 001521 acttgtttgt ttagtattat ctatgctgct atctggaaga gttgggtagt catggcagag accttatggt ctgcaaagct 001600 001601 gaaaatattt attattgggc ttttcacaga aaaagattgc ctacATGTGA CCTACAAGAA TATACACTTG Tggccaggcg 001680 001681 cagtggctca cgcctgtcat cccagcactt tgggaggctg aggtgggtgg atcacctgag gtcaggagtt tgagaccagc 001760 001761 ctggccaaca aggtgaaacc ctgtctctac taaaaataca aaaattagcc gggtgtggtg gtgtgcgcat gtaatcccag 001840 001841 ctactctgga ggctgaggca ggagattcac ttgaacctgg aaggtggagg ttgcagtgag ctgagatctt gtcactgcac 001920 001921 tccagcctgg gggacagagt gagactcagt ctcaaaaaat acaaaaaaga aTATACACTT GTGCCAGCAC AGTACTTAGC 002000 002001 ACTAAGGATT TCTCTTTGCC ACTGAATGGA AAAAACACCC TTGTTATTAT TAATGATGTT ATGCTTTATT GTTAACTTTA 002080 002081 TTACTAGATT ATTACTTTTA CTCATCTCTT CTTGCATACT CTTCTATTCT TCTGATATTT GTGTCTGTAT TAGTGCCTAT 002160 002161 TTGAGCCCAT CTGCTTAATA TGGTACATTT TAGTATCTAA TAAAGGGTGC CTGACttttt |
Predicted Small Protein
Name | NONHSAT068318_smProtein_1571:1720 |
Length | 50 |
Molecular weight | 5420.3354 |
Aromaticity | 0.102040816327 |
Instability index | 52.412244898 |
Isoelectric point | 7.86444091797 |
Runs | 8 |
Runs residual | 0.00121345835632 |
Runs probability | 0.0315094506271 |
Amino acid sequence | MAETLWSAKLKIFIIGLFTEKDCLHVTYKNIHLWPGAVAHACHPSTLGG |
Secondary structure | LHHHHHHHHHHHHEEEELLLLLEEEEEELLLEELLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |