NONHSAT068485
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT068485 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3974 nt |
Genomic location |
chr2-:194493..198450 |
Exon number |
1 |
Exons |
194493..198450 |
Genome context |
|
Sequence |
000001 GGACAGAAGG GAAAAGGCCC CGCGCGTCTC CACGTCAACA GGCCGGAAAG GCAGACAGAA GGGAAAAGGC CCCGCGCGTC 000080
000081 TCCACGTCAA CAGGCCGGAA AGGCAGACAG AAGGGAAAAG GCCCCGCGCG TCTCCACGTC AACAGGCCGG AAAGGCAGAC 000160 000161 AGAAGGGAAA AGGCCCCGCG CGTCTCCACG TCAACAGGCC GGAAAGGCAG ACAGAAGGGA AAAGGCCCCG CGCGTCTCCA 000240 000241 CGTCAACAGG CCGGAAAGGC AGACAGGAGG GAAAACGCCC CGCGCGTCTC CACGTCAACA GGCCGGAAAG GCAGACAGAA 000320 000321 GGGAAAACGC CCCGCGCGTC TCCACGTCAA CAGGCCGGAA AGGCAGACAG AAGGGAAAAG GCCCCGCGCG TCTCCACGTC 000400 000401 AACAGGCCGG AAAGGCAGAC AGAAGGGAAA AGGCCCCGCG CGTCTCCACG TCAACAGGCC GGAAAGGCAG ACAGAAGGGA 000480 000481 AAAGGCCCCG CGCGTCTCCA CGTCAACAGG CCGGAAAGGC AGACAGAAGG GAAAAGGCCC CGCGCGTCTC CACGTCAACA 000560 000561 GGCCGGAAAG GCAGACAGAA GGGAAAAGGC CCCGCGCGTC TCCACGTCAA CAGGCCGGAA AGGCAGACAG AAGGGAAAAC 000640 000641 GCCCCGCGCG TCTCCACGTC AACAGGCCGG AAAGGCAGAC AGAAGGGAAA AGGCCCCGCG CGTCTCCACG TCAACAGGCC 000720 000721 GGAAAGGCAG ACAGAAGGGA AAAGGCCCCG CGCGTCTCCA CGTCAACAGG CCGGAAAGGC AGACAGAAGG GAAAAGGCCC 000800 000801 CGCGCGTTTC CACGTCAACA GGCCGGAAAG GCAGACAGAA GGGAAAAGGC TCCGCGCGTT TCCATGTCAA CAGGCCGGAA 000880 000881 AGGAAGACAG AAGGGAAAAC GCTCCGCGTG TTTCCATGTC AAGAGGCCGG AAAGGCAGAC AGAAGGGAAA AGGCCCCGCG 000960 000961 CGTTTCTGTG TCCAGAGGCC GGAAAGGCAG ACAGAAGGGA AAAGGCCCTG CGCGTTTCTG TGTTCTGTTA CGGGGCTGGG 001040 001041 GTGTGCAGTC AGGGTTTTCC TTTCCAACAC TTTATATCAT GGCTTATTTT CTTAATATTA GTAAAAACAC ATTAAAAATG 001120 001121 AGTTCAAGTA GAAATTAATA GAGTAAGAAT ACATAACCTG GATGTTCATT TGCTCTCACT TTATCCTTGC AAAACCATCT 001200 001201 GGAATTTCTC CCCTGGTGCT TCCAAGGAGA TCATAATTAT AACGTAGATC CTGGAAAAGA CACCTCCCAA CGAGGTGACA 001280 001281 TTTGTGACCC CTTGGATCAA GGTCAGCCCT TACAGTATGC TATTTAAGTA CTGAAACACA GTTTCCTGCA AAACCTTCCA 001360 001361 AGTCAATATA CACATCTGTT GCTTCAAATC ATTTAAACAG CCCTGTAAAT GTAGCCAAAT GTCCTGTTTT AGTGGGCTCT 001440 001441 GGCTTGCCCC CAGCAGGGGT GGCTGCAGTA GTTAGTTGAG GTCCACTTGG TCCAGGTTTT TAATTTGTAG CAGTATTGGA 001520 001521 AGGGTTATTT AATATAGGAG TTTTAAAGCT ATAAAATATA TAGCCAAGAA AGACTGAGTT TTGATGTATG CATACAATCC 001600 001601 CAAACTCCTT AATACTAAAA ATCAAGAGAC TAAAACCCTT AAGCTTCTGT TCCCAGGAGA TTATAATGGT TTCACAAAAG 001680 001681 CTCCCATGTT TCTGTTTAGA CCCTGAGAAG GGCTCTTTCC ACCAGAGAAG ACAGAGGTCC TTGGCCCCAC CTCTGAGGTG 001760 001761 GGCACAGCCT CACCCAGCCC AGATGGCTCT CACGGCCAGG GCCAAGACAC GTCCTGGCTG AAGGCCACCG TACACAGCAG 001840 001841 CAGGGCCCCT GAAATATGAA CTCAACAAAA TTGTAGCATA GAGAACTCCG TAACAGTTAA ACTCTGGACA CCAAATGAAA 001920 001921 TCCACCAGGG ACAAAAATCT GTTTCAGTAA CTACTGCCAA CATCGGACTT TCCCCTGCCC TGTGATGGGG AAAAGAGGGC 002000 002001 AAGTTAAGAG CCACCCTCCC ACAACTTTGA GCTCCAGCAG CCACTGAAAA GAACCACCTT CCCCACATGA CACAGACAAG 002080 002081 ACTCACCAGT GACAGGGCCA GAATCAGACC CTCTGCATTC CCATTTTTGT CCCACAGATG TGTAGCTGAA CTGCTTTGAC 002160 002161 TCCACTGATC TATCTTAAAA AAATACTTGT TAGCCGAACT TCGACTCAGC TTCTCCTCTC GGCCAAGCCC ACCCATGAAT 002240 002241 GCTGCGATGG GGACCCCACC CTCCCCTCCA TCTCTTCCCA GTGGGCTGAC CCATTTCCTG CCCACTGTCC ACTGCGCCAC 002320 002321 GGGCCCCTCC ATGCCTCACC CAGGTGTTCT AGGCTTGGTT ACTCCCTCCT CCTAAAACAA AAGTGCTTTT CTGCCTGAGA 002400 002401 TGCTTGAAGT TCTTTGGGGT CAGAGCATTC ACCCTGTGTC ATGAAGTCCC CTCCCTCTCT CAAAATGAGA ACTTCAGGTA 002480 002481 AACTCTCTGC TTAAGCGAGT CTGGATTTGT GTTTCACTGA AACACAGAGA AGACAGAGAG GACACTACAC TGGCTGAGAA 002560 002561 CTACCATACG TCCTTAATAA CAATGAACAA TGAACAAGAG AGAGGGCCCC ACGTTCTGGC AACATGGCGA ACCTGTGAAC 002640 002641 TAGGGAAGCC CTCCCAGCAC AGAAAGTGCC AGGAAAATAA AAACAAACAG AACATTTTAA AATTTATGAC TGTGTAAGTA 002720 002721 GAAAAATAAG GTGAGTCTTA GAGGTATGAA TCTGTAAGAA CAGGCAGCCT TGATTGGCTG AGGCTGTGAT TTTCCCAGAA 002800 002801 GGAAAATGTG GCCGAGGCAT GGGGGTTCAT AGGTTTCACC TGAGGGCGGT GGAAATGGCC TTTGTAAGTT TGAGTCCTGC 002880 002881 AAAGGGGACA ATTACAGCAT GAGAAAAGGG GACAGACCCT CAGGATAATC ACTCTGTTTG AATTCTGGTG GAGGGGAAAT 002960 002961 GAGACCAAAA ATATCACTCC AGAGTCTTCC TCAACTCAGT GCTTTGATTT GGGGTTCAAT TCATGCTGTC TCTGTGGCCC 003040 003041 AGCAAGCCCT AATTCTAGAA TGGAAAGATT GGTACCAGGT AGAAGCAAAA ACACTCCTCT CTGGGGCAAA ACACTTTAAA 003120 003121 GAAGGCCTGG GCCACGTTCC AGGCCTTTAG GAGACTCTCC TAGGAAAGTG GGATCTGATT TGCTCCAGTC GTGGAGCCTG 003200 003201 GGAAGGTGGT TCTGGGGGAA GGTCGTGCCT TTCTGACCAG CCTCTGAGAG CTGAGTCAAG AAGTTAGAGG AGAGCTGGTG 003280 003281 CCTGGTTGGG CCTGGCCAGT AACTCCTGCA GGAACTGCAG TGAGGGCCGA CCCTGAGCCC AGAAAGGTTC CCGATGATTA 003360 003361 ACAGGAGGCT CTGAAAAGTG CATCATTTAT TCTTAGCATT GTCAAATTGC TTGACCCAAG TCAGAGGTGA TTTTTTGGTT 003440 003441 TATTATTTGC AAAGCATCGT GCCTTTACCC TGCAGGGGCC ATTTCCCCTC ACAAGGAATG CAGCAAGGAG CTTGGAAGCA 003520 003521 GACGGCTGTG GGGAAGGACC AGCATGGGTG GGGGTGCTTT GAGAGGAGAG ACAGAGGGCC TTTGCCCTTT CACCGGAGAG 003600 003601 ACATGGTGCC ACTAAGAGTT GCGAAGGGTA AAGAATGTGT GAAGACACAG ATACCTTGGG GGACAGTTTT TCCTCTAACT 003680 003681 CAGGAATGAG GATGGTTCAA CTCACACTAT TTCAAGCCTT CCAAGTAAAC AGTAGTTAGT AAAAACACAA TACCTGTCTC 003760 003761 TAATATTACT TGCCTAAATA TATGGACATA TGAAAATGTA TCTCAAAAAA ATAATCTAAA GAGAAGGAGA AAACTATAAT 003840 003841 AAAAGGTGTT TATTGCAGTG ATAAAAATAT CAAACAACAG TAGTAAATGT AAGTCTTGCA GTCAAGCTTT AGGGTATTGT 003920 003921 TCAATAATCA AAATAAAATG TTGATTATGT AGCAACACAA AAAAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT068485_smProtein_863:1114 |
Length | 84 |
Molecular weight | 9495.0487 |
Aromaticity | 0.10843373494 |
Instability index | 62.6795180723 |
Isoelectric point | 10.7241821289 |
Runs | 13 |
Runs residual | 0.0165997322624 |
Runs probability | 0.0575734105146 |
Amino acid sequence | MSTGRKGRQKGKRSACFHVKRPERQTEGKRPRAFLCPEAGKADRREKALRVSVFCYGAGV CSQGFPFQHFISWLIFLILVKTH |
Secondary structure | LLLLLLLLLLLLLEEEEEELLLLLLLLLLLLLEEELLLLLLHHHHHHHLEEEEEEELLLE ELLLLLHHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLHHHHHHHHHHHHHHHHHHLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiTTTTTTTTTTTTTTTTTToo |