NONHSAT068485

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT068485

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3974 nt

Genomic location

chr2-:194493..198450

Exon number

1

Exons

194493..198450

Genome context

Sequence
000001 GGACAGAAGG GAAAAGGCCC CGCGCGTCTC CACGTCAACA GGCCGGAAAG GCAGACAGAA GGGAAAAGGC CCCGCGCGTC 000080
000081 TCCACGTCAA CAGGCCGGAA AGGCAGACAG AAGGGAAAAG GCCCCGCGCG TCTCCACGTC AACAGGCCGG AAAGGCAGAC 000160
000161 AGAAGGGAAA AGGCCCCGCG CGTCTCCACG TCAACAGGCC GGAAAGGCAG ACAGAAGGGA AAAGGCCCCG CGCGTCTCCA 000240
000241 CGTCAACAGG CCGGAAAGGC AGACAGGAGG GAAAACGCCC CGCGCGTCTC CACGTCAACA GGCCGGAAAG GCAGACAGAA 000320
000321 GGGAAAACGC CCCGCGCGTC TCCACGTCAA CAGGCCGGAA AGGCAGACAG AAGGGAAAAG GCCCCGCGCG TCTCCACGTC 000400
000401 AACAGGCCGG AAAGGCAGAC AGAAGGGAAA AGGCCCCGCG CGTCTCCACG TCAACAGGCC GGAAAGGCAG ACAGAAGGGA 000480
000481 AAAGGCCCCG CGCGTCTCCA CGTCAACAGG CCGGAAAGGC AGACAGAAGG GAAAAGGCCC CGCGCGTCTC CACGTCAACA 000560
000561 GGCCGGAAAG GCAGACAGAA GGGAAAAGGC CCCGCGCGTC TCCACGTCAA CAGGCCGGAA AGGCAGACAG AAGGGAAAAC 000640
000641 GCCCCGCGCG TCTCCACGTC AACAGGCCGG AAAGGCAGAC AGAAGGGAAA AGGCCCCGCG CGTCTCCACG TCAACAGGCC 000720
000721 GGAAAGGCAG ACAGAAGGGA AAAGGCCCCG CGCGTCTCCA CGTCAACAGG CCGGAAAGGC AGACAGAAGG GAAAAGGCCC 000800
000801 CGCGCGTTTC CACGTCAACA GGCCGGAAAG GCAGACAGAA GGGAAAAGGC TCCGCGCGTT TCCATGTCAA CAGGCCGGAA 000880
000881 AGGAAGACAG AAGGGAAAAC GCTCCGCGTG TTTCCATGTC AAGAGGCCGG AAAGGCAGAC AGAAGGGAAA AGGCCCCGCG 000960
000961 CGTTTCTGTG TCCAGAGGCC GGAAAGGCAG ACAGAAGGGA AAAGGCCCTG CGCGTTTCTG TGTTCTGTTA CGGGGCTGGG 001040
001041 GTGTGCAGTC AGGGTTTTCC TTTCCAACAC TTTATATCAT GGCTTATTTT CTTAATATTA GTAAAAACAC ATTAAAAATG 001120
001121 AGTTCAAGTA GAAATTAATA GAGTAAGAAT ACATAACCTG GATGTTCATT TGCTCTCACT TTATCCTTGC AAAACCATCT 001200
001201 GGAATTTCTC CCCTGGTGCT TCCAAGGAGA TCATAATTAT AACGTAGATC CTGGAAAAGA CACCTCCCAA CGAGGTGACA 001280
001281 TTTGTGACCC CTTGGATCAA GGTCAGCCCT TACAGTATGC TATTTAAGTA CTGAAACACA GTTTCCTGCA AAACCTTCCA 001360
001361 AGTCAATATA CACATCTGTT GCTTCAAATC ATTTAAACAG CCCTGTAAAT GTAGCCAAAT GTCCTGTTTT AGTGGGCTCT 001440
001441 GGCTTGCCCC CAGCAGGGGT GGCTGCAGTA GTTAGTTGAG GTCCACTTGG TCCAGGTTTT TAATTTGTAG CAGTATTGGA 001520
001521 AGGGTTATTT AATATAGGAG TTTTAAAGCT ATAAAATATA TAGCCAAGAA AGACTGAGTT TTGATGTATG CATACAATCC 001600
001601 CAAACTCCTT AATACTAAAA ATCAAGAGAC TAAAACCCTT AAGCTTCTGT TCCCAGGAGA TTATAATGGT TTCACAAAAG 001680
001681 CTCCCATGTT TCTGTTTAGA CCCTGAGAAG GGCTCTTTCC ACCAGAGAAG ACAGAGGTCC TTGGCCCCAC CTCTGAGGTG 001760
001761 GGCACAGCCT CACCCAGCCC AGATGGCTCT CACGGCCAGG GCCAAGACAC GTCCTGGCTG AAGGCCACCG TACACAGCAG 001840
001841 CAGGGCCCCT GAAATATGAA CTCAACAAAA TTGTAGCATA GAGAACTCCG TAACAGTTAA ACTCTGGACA CCAAATGAAA 001920
001921 TCCACCAGGG ACAAAAATCT GTTTCAGTAA CTACTGCCAA CATCGGACTT TCCCCTGCCC TGTGATGGGG AAAAGAGGGC 002000
002001 AAGTTAAGAG CCACCCTCCC ACAACTTTGA GCTCCAGCAG CCACTGAAAA GAACCACCTT CCCCACATGA CACAGACAAG 002080
002081 ACTCACCAGT GACAGGGCCA GAATCAGACC CTCTGCATTC CCATTTTTGT CCCACAGATG TGTAGCTGAA CTGCTTTGAC 002160
002161 TCCACTGATC TATCTTAAAA AAATACTTGT TAGCCGAACT TCGACTCAGC TTCTCCTCTC GGCCAAGCCC ACCCATGAAT 002240
002241 GCTGCGATGG GGACCCCACC CTCCCCTCCA TCTCTTCCCA GTGGGCTGAC CCATTTCCTG CCCACTGTCC ACTGCGCCAC 002320
002321 GGGCCCCTCC ATGCCTCACC CAGGTGTTCT AGGCTTGGTT ACTCCCTCCT CCTAAAACAA AAGTGCTTTT CTGCCTGAGA 002400
002401 TGCTTGAAGT TCTTTGGGGT CAGAGCATTC ACCCTGTGTC ATGAAGTCCC CTCCCTCTCT CAAAATGAGA ACTTCAGGTA 002480
002481 AACTCTCTGC TTAAGCGAGT CTGGATTTGT GTTTCACTGA AACACAGAGA AGACAGAGAG GACACTACAC TGGCTGAGAA 002560
002561 CTACCATACG TCCTTAATAA CAATGAACAA TGAACAAGAG AGAGGGCCCC ACGTTCTGGC AACATGGCGA ACCTGTGAAC 002640
002641 TAGGGAAGCC CTCCCAGCAC AGAAAGTGCC AGGAAAATAA AAACAAACAG AACATTTTAA AATTTATGAC TGTGTAAGTA 002720
002721 GAAAAATAAG GTGAGTCTTA GAGGTATGAA TCTGTAAGAA CAGGCAGCCT TGATTGGCTG AGGCTGTGAT TTTCCCAGAA 002800
002801 GGAAAATGTG GCCGAGGCAT GGGGGTTCAT AGGTTTCACC TGAGGGCGGT GGAAATGGCC TTTGTAAGTT TGAGTCCTGC 002880
002881 AAAGGGGACA ATTACAGCAT GAGAAAAGGG GACAGACCCT CAGGATAATC ACTCTGTTTG AATTCTGGTG GAGGGGAAAT 002960
002961 GAGACCAAAA ATATCACTCC AGAGTCTTCC TCAACTCAGT GCTTTGATTT GGGGTTCAAT TCATGCTGTC TCTGTGGCCC 003040
003041 AGCAAGCCCT AATTCTAGAA TGGAAAGATT GGTACCAGGT AGAAGCAAAA ACACTCCTCT CTGGGGCAAA ACACTTTAAA 003120
003121 GAAGGCCTGG GCCACGTTCC AGGCCTTTAG GAGACTCTCC TAGGAAAGTG GGATCTGATT TGCTCCAGTC GTGGAGCCTG 003200
003201 GGAAGGTGGT TCTGGGGGAA GGTCGTGCCT TTCTGACCAG CCTCTGAGAG CTGAGTCAAG AAGTTAGAGG AGAGCTGGTG 003280
003281 CCTGGTTGGG CCTGGCCAGT AACTCCTGCA GGAACTGCAG TGAGGGCCGA CCCTGAGCCC AGAAAGGTTC CCGATGATTA 003360
003361 ACAGGAGGCT CTGAAAAGTG CATCATTTAT TCTTAGCATT GTCAAATTGC TTGACCCAAG TCAGAGGTGA TTTTTTGGTT 003440
003441 TATTATTTGC AAAGCATCGT GCCTTTACCC TGCAGGGGCC ATTTCCCCTC ACAAGGAATG CAGCAAGGAG CTTGGAAGCA 003520
003521 GACGGCTGTG GGGAAGGACC AGCATGGGTG GGGGTGCTTT GAGAGGAGAG ACAGAGGGCC TTTGCCCTTT CACCGGAGAG 003600
003601 ACATGGTGCC ACTAAGAGTT GCGAAGGGTA AAGAATGTGT GAAGACACAG ATACCTTGGG GGACAGTTTT TCCTCTAACT 003680
003681 CAGGAATGAG GATGGTTCAA CTCACACTAT TTCAAGCCTT CCAAGTAAAC AGTAGTTAGT AAAAACACAA TACCTGTCTC 003760
003761 TAATATTACT TGCCTAAATA TATGGACATA TGAAAATGTA TCTCAAAAAA ATAATCTAAA GAGAAGGAGA AAACTATAAT 003840
003841 AAAAGGTGTT TATTGCAGTG ATAAAAATAT CAAACAACAG TAGTAAATGT AAGTCTTGCA GTCAAGCTTT AGGGTATTGT 003920
003921 TCAATAATCA AAATAAAATG TTGATTATGT AGCAACACAA AAAAAAAAAA AAAA
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Predicted Small Protein

Name NONHSAT068485_smProtein_863:1114
Length 84
Molecular weight 9495.0487
Aromaticity 0.10843373494
Instability index 62.6795180723
Isoelectric point 10.7241821289
Runs 13
Runs residual 0.0165997322624
Runs probability 0.0575734105146
Amino acid sequence MSTGRKGRQKGKRSACFHVKRPERQTEGKRPRAFLCPEAGKADRREKALRVSVFCYGAGV
CSQGFPFQHFISWLIFLILVKTH
Secondary structure LLLLLLLLLLLLLEEEEEELLLLLLLLLLLLLEEELLLLLLHHHHHHHLEEEEEEELLLE
ELLLLLHHHHHHHHHHHHHHLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLHHHHHHHHHHHHHHHHHHLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiTTTTTTTTTTTTTTTTTToo