NONHSAT068631

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT068631

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

3884 nt

Genomic location

chr2-:1033074..1036926

Exon number

1

Exons

1033074..1036926

Genome context

Sequence
000001 GACAAATCCA ACTATGGTTA ACTGTTCTTT ACACTAAGCA CCGCACTGAG AGCAACACAA ACAAAACTGC AGGTGAAGGT 000080
000081 GTCTGCAGCA CACACAGTGA GAATTCGCCC TAGAAAGTAC AGGATATGTA ACATGCTGCG GGACAGATGC AGAGAGGCCA 000160
000161 CTTTCCCTCT GAAGAGGAAT CACACACCTT AGCATGTGCC TGACAAAAGG TATTCCCTTT TCTCTGCCAG TCCCGGAATT 000240
000241 TAACATTAGC CTCCACCAAA AAGCCGTCTG ATTCACTTGA CTGAGGGCTT CACTGCTTCC ACTGGACAGA AAAAGCAAAC 000320
000321 TGAACATGAA GCAAACTCAG AAATCAAACA GCTGCTCTGA TGGCACAGCC GGGCTCCATC ACACAGGCAT ATTTTTGAAG 000400
000401 CATAATTAAT ATCAAACGTC AAGGGTGGCA GGACAGGGAG GATTTAGTTA TTCTGCTACT TACACTGTCA TTATGCGTTT 000480
000481 TAGCCTCTTC AGAAATGAGG TTTCTTCATC ACGTCTTTTG AAATGCTTCA TACCATCAGG TATGATGTTA AGGAAAAACA 000560
000561 TCTAAATTGG TTTTTGTTTG AAGCATGAAA AAGGGAAATT CATGTTTCAG GAAGCAAAGT TTTTCTATTA TCAACAGGTT 000640
000641 AATGTGTTTG GTAGATCAAT GTGGATTTCG GCAATGGCCG GCAGAAACTC CAACCAGAAA GACCCCTGAA CTTTACTGAC 000720
000721 TTTCCCTGGA GGCCAGAGGA AGTCAGAGCC TTGGAGCCAG TCAGTGCAAA GGTGGGGCTG GACAGGGCAA GGTACTGAAA 000800
000801 GCAGAGGTGG CGGGAAGGGG AAAGCTGGAG AAAGACAGGA GGAAAGAGGG CCATGGGAGC CGGAATCCGA GGAGAGGTTT 000880
000881 AGGCTATAGG GAGGCGAGCA GGTGAGGGCC AGAGAAGGGG TTCTCAAACT GGGGTCCCCA GTGGAATGGC CTGGGAAGCT 000960
000961 TCAAAACTCC CCATGCCTGG GTTCCGCCCA CAGGGACTCT GGTGTCACTG GCGTGGGGTG CAGGAATTTA TCCTGCCTGC 001040
001041 AGGTGATTCT ATGGGACAGG CAAGTTAACA ACAATTGACT GTAAGAGAAT GATGCAGGCG TAAGTGGCAG CCCCCACAAG 001120
001121 CGTGCCTGGA AAGGAGCTGC AGGTGAGGAC AGAGGCCCCA GTGTTCATGT GACCCGCACA GGCCAATCCT GCAAAGCAGA 001200
001201 TCTGGGATAA GAATAAGGAA TGCCTGACCC CAGAGACCTT CTCTTTCAAC TGAAGCCCTC TGACAGCCAG CTCAATCCCA 001280
001281 GAGTGTCCCA TCTGCTCAGA GCCAAAAGGA GCCCAGAGGT TCACAGCGTG TGCCCAGGAC AGCCGCCAGC CTCCTGTCTG 001360
001361 CAGAAAGATG GAGAAGGTTA AACAGGTCCC CCACAACCCT TCCAGAGCAG GGCTGACAGC CCTGAAGTGA GGCTGCACAC 001440
001441 ACAGCTTCCC AGTGATGTTA TTAGGAGCAG CTGCACAGCT TCCCAGTGGT GTTATTAGGA GCAGCGCTTA TATTTTTCCA 001520
001521 TAATCCAGAA AAAAATGTCA ATAAATAGGT CTTTTATGAC TTGGCTTTAA AATTTGTAGA GGGCCAAACG CCAGTCATGA 001600
001601 TCATGCCGTA CCATACCAGT GTCTGATAAA AAGAGACTGA TTCTGCCATC CCCCCAAGAT TGATGGCCCT CAAAGAAAAC 001680
001681 AAGGAAGACC AGTCAATAAT GACCTACTTA GGGGGCATTT TCAAAGAAAA ATAATGGTAG AACTTCATGC TGTTGAATGA 001760
001761 CTCCTATTTT TGTAAAAATG GAATGCTGAA ATAAGTCACA AAGATCAAAA GACTTTTTAA CAAAATGGCA TAACATTTGA 001840
001841 ATAATCTGAA TTTGACACAC AGAAAGCATT TCAATGTTAT TTAAAATAGA CGTCTACCTG CTTAAACGGT ATTTAAAATG 001920
001921 CAATCTAATT GTGAGAAAAA ATGGAAGGAA AGGCTTGTAC ACATATTTCA GAGTCAGAGA ATGCATTAAA ACTATCACAA 002000
002001 GAAAATAAAG GAATTGTTAT TTATCATTAC TAAAAATCAA CTGTCAGTCA CTCAGACAAC TACTGTTGAA GTTGTCAAAA 002080
002081 CATTTCTTTA TATACCTTAA CTGGGAATTT TTATCATTGA TTTCAAAATG CAGAATTAAA GATAAACCCT AATTACTGTA 002160
002161 TAAAAGATAC TATCACCTTC AGAAATGAGT CTGTGGGAGC TTTATGCACA CTCCATATGA ACTTACAGAT TTGCAAAGTG 002240
002241 GAAGATGTGG CCAAGATGCA TGTTTTTCAA TAAAGATGTT GTTCTTATAA AAAAGGTAGA AGCATAACAA TATGAGCTCA 002320
002321 CTTGGGAAGA ATAAACTGCA GGTGGAAAAG GATGAAAAAC AGGCAGTGGA TCTAAATCTT CCCAATGTGC CACATAGTTC 002400
002401 ATTAGATGCC ACATTTGACT GTGAAATTAA ATTAAGACTA GGCTTCTAGC TTTCCTTTAA ATAATAAAAA CTTTAGTTAC 002480
002481 TTGATTTACC AGGCTTTTCA TGCTCACTTG AACCATCTGC AAAACTGTTA CAAAGGTGAG CTTGAACTTG AGTTCCACGT 002560
002561 GTCAAAACAA TTACAGTTAC TATTTTATAA GCAAGTTCTT CAGAAGATAA ATCCTCTCGA ATAATAGCTA AGATTTATCT 002640
002641 TATCCATGTT GAATTTCTTT GAATTTTAAC TTATTTAAAA GGAAAATGGC AGAAAAGGTT AATTTGGATG CTGCCAAACA 002720
002721 TGAACAAAAG GAAGACAGAA CTGTAGGAGG GGCTATGACT TCAAGGAAGG CGGAGCTTCC TCGGGTCCAT GACACAATAC 002800
002801 TTTGAGAAGT CACTGTTCAT TTCACATACA AGTTTAGATA TCCCAGGATT ACATTTTCCC CTACAATTAG CTGTGGGCTT 002880
002881 TATTTTTGCC AGTCTGAAAG TAGAAACTCC TAGGTTCATT CTATGAGAAC GTGGTTACAG AAAATGAATC TTGCCCAAAA 002960
002961 TGTATTATGG AAATAATACA CAGATATCTT CCTTATTGAA TACTGACAGC AGTTCAGCTT TAAAAGAAAA CCAAGTATGA 003040
003041 AATTGGTCAT GAGGCCATGA ATTTTATTTG TAAAGATGAT CAAGTAGAAC CAAAGTTAAG CAAACACCTC TGACCAAAAG 003120
003121 TAGGGCCAGG TTTTGACAAC GGATACATAA TTGCTCAGAC GTGAGGGAAC CTTCATATAC CACTGGGAGG AATACAAAAT 003200
003201 GCCACAGTTG TTTTGGAAAA CAGTCTGAAA ACTCTTCCAC AGATGAGAAG CAGAGTGACC ATGTGACATA GCAAGCCCAC 003280
003281 CCAAGTACAT ACCCAAGAGA AGCAGAAACT CAGGTCCACA CCAAAGCTTG AACACCACCG TCCACAGCCT CAGGATTCAT 003360
003361 AACAGCCAAG CTTAAAGACA ACCAGAAAGT CCATCCCTCA TGAGTGGATA AATAACATGT TGTAGCCATA AAATGGAATA 003440
003441 TTATTCAGCA ATCAAAGAAA ATGAAGAACT GATTCATGCA AACAACAAAA ATGAACCCCC AAAACATGAT GCGAAGTAGA 003520
003521 AGAACCCAAA CACAAAAGAC CAGACGTCCT ATGTTATGTG TATATAAAGC ATCAGACGTC CTATGTTCTG TGTATATAAA 003600
003601 GCACCAGACG TCCTATGATT CTGTGTATAT AAAGCACCAG ACGTCCTATG ATTCTGTGTA TATAAAGCCT CAGAAGTCGC 003680
003681 AAATCCAGAG AGGCAAAAAG CAGGTCCCTG GTGGCCAGGG ACTGGGGCAG GGAGCATGCA AAATGGCTGT AAATGGCTTC 003760
003761 TTTCTGGGGT GATGGAAATG GTCTAAAACC TATTGTGCCA AAGGCTGCAC AACTCTGTGA ATATAATAAA AACACTGAAT 003840
003841 CACACCCTTT AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAA
[back to top]

Predicted Small Protein

Name NONHSAT068631_smProtein_584:718
Length 45
Molecular weight 5210.0694
Aromaticity 0.113636363636
Instability index 40.6340909091
Isoelectric point 9.64703369141
Runs 5
Runs residual 0.0494652406417
Runs probability 0.0247129482424
Amino acid sequence MKKGNSCFRKQSFSIINRLMCLVDQCGFRQWPAETPTRKTPELY
Secondary structure LLLLLLEELLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -