NONHSAT068631
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT068631 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
3884 nt |
Genomic location |
chr2-:1033074..1036926 |
Exon number |
1 |
Exons |
1033074..1036926 |
Genome context |
|
Sequence |
000001 GACAAATCCA ACTATGGTTA ACTGTTCTTT ACACTAAGCA CCGCACTGAG AGCAACACAA ACAAAACTGC AGGTGAAGGT 000080
000081 GTCTGCAGCA CACACAGTGA GAATTCGCCC TAGAAAGTAC AGGATATGTA ACATGCTGCG GGACAGATGC AGAGAGGCCA 000160 000161 CTTTCCCTCT GAAGAGGAAT CACACACCTT AGCATGTGCC TGACAAAAGG TATTCCCTTT TCTCTGCCAG TCCCGGAATT 000240 000241 TAACATTAGC CTCCACCAAA AAGCCGTCTG ATTCACTTGA CTGAGGGCTT CACTGCTTCC ACTGGACAGA AAAAGCAAAC 000320 000321 TGAACATGAA GCAAACTCAG AAATCAAACA GCTGCTCTGA TGGCACAGCC GGGCTCCATC ACACAGGCAT ATTTTTGAAG 000400 000401 CATAATTAAT ATCAAACGTC AAGGGTGGCA GGACAGGGAG GATTTAGTTA TTCTGCTACT TACACTGTCA TTATGCGTTT 000480 000481 TAGCCTCTTC AGAAATGAGG TTTCTTCATC ACGTCTTTTG AAATGCTTCA TACCATCAGG TATGATGTTA AGGAAAAACA 000560 000561 TCTAAATTGG TTTTTGTTTG AAGCATGAAA AAGGGAAATT CATGTTTCAG GAAGCAAAGT TTTTCTATTA TCAACAGGTT 000640 000641 AATGTGTTTG GTAGATCAAT GTGGATTTCG GCAATGGCCG GCAGAAACTC CAACCAGAAA GACCCCTGAA CTTTACTGAC 000720 000721 TTTCCCTGGA GGCCAGAGGA AGTCAGAGCC TTGGAGCCAG TCAGTGCAAA GGTGGGGCTG GACAGGGCAA GGTACTGAAA 000800 000801 GCAGAGGTGG CGGGAAGGGG AAAGCTGGAG AAAGACAGGA GGAAAGAGGG CCATGGGAGC CGGAATCCGA GGAGAGGTTT 000880 000881 AGGCTATAGG GAGGCGAGCA GGTGAGGGCC AGAGAAGGGG TTCTCAAACT GGGGTCCCCA GTGGAATGGC CTGGGAAGCT 000960 000961 TCAAAACTCC CCATGCCTGG GTTCCGCCCA CAGGGACTCT GGTGTCACTG GCGTGGGGTG CAGGAATTTA TCCTGCCTGC 001040 001041 AGGTGATTCT ATGGGACAGG CAAGTTAACA ACAATTGACT GTAAGAGAAT GATGCAGGCG TAAGTGGCAG CCCCCACAAG 001120 001121 CGTGCCTGGA AAGGAGCTGC AGGTGAGGAC AGAGGCCCCA GTGTTCATGT GACCCGCACA GGCCAATCCT GCAAAGCAGA 001200 001201 TCTGGGATAA GAATAAGGAA TGCCTGACCC CAGAGACCTT CTCTTTCAAC TGAAGCCCTC TGACAGCCAG CTCAATCCCA 001280 001281 GAGTGTCCCA TCTGCTCAGA GCCAAAAGGA GCCCAGAGGT TCACAGCGTG TGCCCAGGAC AGCCGCCAGC CTCCTGTCTG 001360 001361 CAGAAAGATG GAGAAGGTTA AACAGGTCCC CCACAACCCT TCCAGAGCAG GGCTGACAGC CCTGAAGTGA GGCTGCACAC 001440 001441 ACAGCTTCCC AGTGATGTTA TTAGGAGCAG CTGCACAGCT TCCCAGTGGT GTTATTAGGA GCAGCGCTTA TATTTTTCCA 001520 001521 TAATCCAGAA AAAAATGTCA ATAAATAGGT CTTTTATGAC TTGGCTTTAA AATTTGTAGA GGGCCAAACG CCAGTCATGA 001600 001601 TCATGCCGTA CCATACCAGT GTCTGATAAA AAGAGACTGA TTCTGCCATC CCCCCAAGAT TGATGGCCCT CAAAGAAAAC 001680 001681 AAGGAAGACC AGTCAATAAT GACCTACTTA GGGGGCATTT TCAAAGAAAA ATAATGGTAG AACTTCATGC TGTTGAATGA 001760 001761 CTCCTATTTT TGTAAAAATG GAATGCTGAA ATAAGTCACA AAGATCAAAA GACTTTTTAA CAAAATGGCA TAACATTTGA 001840 001841 ATAATCTGAA TTTGACACAC AGAAAGCATT TCAATGTTAT TTAAAATAGA CGTCTACCTG CTTAAACGGT ATTTAAAATG 001920 001921 CAATCTAATT GTGAGAAAAA ATGGAAGGAA AGGCTTGTAC ACATATTTCA GAGTCAGAGA ATGCATTAAA ACTATCACAA 002000 002001 GAAAATAAAG GAATTGTTAT TTATCATTAC TAAAAATCAA CTGTCAGTCA CTCAGACAAC TACTGTTGAA GTTGTCAAAA 002080 002081 CATTTCTTTA TATACCTTAA CTGGGAATTT TTATCATTGA TTTCAAAATG CAGAATTAAA GATAAACCCT AATTACTGTA 002160 002161 TAAAAGATAC TATCACCTTC AGAAATGAGT CTGTGGGAGC TTTATGCACA CTCCATATGA ACTTACAGAT TTGCAAAGTG 002240 002241 GAAGATGTGG CCAAGATGCA TGTTTTTCAA TAAAGATGTT GTTCTTATAA AAAAGGTAGA AGCATAACAA TATGAGCTCA 002320 002321 CTTGGGAAGA ATAAACTGCA GGTGGAAAAG GATGAAAAAC AGGCAGTGGA TCTAAATCTT CCCAATGTGC CACATAGTTC 002400 002401 ATTAGATGCC ACATTTGACT GTGAAATTAA ATTAAGACTA GGCTTCTAGC TTTCCTTTAA ATAATAAAAA CTTTAGTTAC 002480 002481 TTGATTTACC AGGCTTTTCA TGCTCACTTG AACCATCTGC AAAACTGTTA CAAAGGTGAG CTTGAACTTG AGTTCCACGT 002560 002561 GTCAAAACAA TTACAGTTAC TATTTTATAA GCAAGTTCTT CAGAAGATAA ATCCTCTCGA ATAATAGCTA AGATTTATCT 002640 002641 TATCCATGTT GAATTTCTTT GAATTTTAAC TTATTTAAAA GGAAAATGGC AGAAAAGGTT AATTTGGATG CTGCCAAACA 002720 002721 TGAACAAAAG GAAGACAGAA CTGTAGGAGG GGCTATGACT TCAAGGAAGG CGGAGCTTCC TCGGGTCCAT GACACAATAC 002800 002801 TTTGAGAAGT CACTGTTCAT TTCACATACA AGTTTAGATA TCCCAGGATT ACATTTTCCC CTACAATTAG CTGTGGGCTT 002880 002881 TATTTTTGCC AGTCTGAAAG TAGAAACTCC TAGGTTCATT CTATGAGAAC GTGGTTACAG AAAATGAATC TTGCCCAAAA 002960 002961 TGTATTATGG AAATAATACA CAGATATCTT CCTTATTGAA TACTGACAGC AGTTCAGCTT TAAAAGAAAA CCAAGTATGA 003040 003041 AATTGGTCAT GAGGCCATGA ATTTTATTTG TAAAGATGAT CAAGTAGAAC CAAAGTTAAG CAAACACCTC TGACCAAAAG 003120 003121 TAGGGCCAGG TTTTGACAAC GGATACATAA TTGCTCAGAC GTGAGGGAAC CTTCATATAC CACTGGGAGG AATACAAAAT 003200 003201 GCCACAGTTG TTTTGGAAAA CAGTCTGAAA ACTCTTCCAC AGATGAGAAG CAGAGTGACC ATGTGACATA GCAAGCCCAC 003280 003281 CCAAGTACAT ACCCAAGAGA AGCAGAAACT CAGGTCCACA CCAAAGCTTG AACACCACCG TCCACAGCCT CAGGATTCAT 003360 003361 AACAGCCAAG CTTAAAGACA ACCAGAAAGT CCATCCCTCA TGAGTGGATA AATAACATGT TGTAGCCATA AAATGGAATA 003440 003441 TTATTCAGCA ATCAAAGAAA ATGAAGAACT GATTCATGCA AACAACAAAA ATGAACCCCC AAAACATGAT GCGAAGTAGA 003520 003521 AGAACCCAAA CACAAAAGAC CAGACGTCCT ATGTTATGTG TATATAAAGC ATCAGACGTC CTATGTTCTG TGTATATAAA 003600 003601 GCACCAGACG TCCTATGATT CTGTGTATAT AAAGCACCAG ACGTCCTATG ATTCTGTGTA TATAAAGCCT CAGAAGTCGC 003680 003681 AAATCCAGAG AGGCAAAAAG CAGGTCCCTG GTGGCCAGGG ACTGGGGCAG GGAGCATGCA AAATGGCTGT AAATGGCTTC 003760 003761 TTTCTGGGGT GATGGAAATG GTCTAAAACC TATTGTGCCA AAGGCTGCAC AACTCTGTGA ATATAATAAA AACACTGAAT 003840 003841 CACACCCTTT AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT068631_smProtein_584:718 |
Length | 45 |
Molecular weight | 5210.0694 |
Aromaticity | 0.113636363636 |
Instability index | 40.6340909091 |
Isoelectric point | 9.64703369141 |
Runs | 5 |
Runs residual | 0.0494652406417 |
Runs probability | 0.0247129482424 |
Amino acid sequence | MKKGNSCFRKQSFSIINRLMCLVDQCGFRQWPAETPTRKTPELY |
Secondary structure | LLLLLLEELLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |