NONHSAT069462
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT069462 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3986 nt |
Genomic location |
chr2-:20812057..20816027 |
Exon number |
1 |
Exons |
20812057..20816027 |
Genome context |
|
Sequence |
000001 AAGATTTTGG TTGGAGTCTT GTAGCTAAGA TTGAGCTGGA GTCCTGGCTC CTGAGGACAG GCACTTTGGC CATTCTGAGA 000080
000081 AGGTCTGCTC AGGCCAGGAG CCTGCAGCTG AGAGTTCCCT GTGGAAGGGA AACAGAAGTT TAACTGGGGA CAACAACACT 000160 000161 TGTTTATTTC GAAGCCTGTT GTGAGCCCAT GGACAGGATG TACTGTCTAT GGCTGGGGTC CCACTGCTCC CTTCCTCCCG 000240 000241 GCATTGTTCC TCTTAGGAAG CCGGGAACTC AGGCCAGTTC TGGAAAGTCC CTAGGGCCTT CCCTGGCCAG GCCTGTGTCA 000320 000321 TGGGCCCCCC TGGAGAGCAC CTACCTGTTG AGTACTGGTG TCCCATGACC ACGTCCATAC AATGTATCTG GGACTAAGTT 000400 000401 CACCTCCATG TGCCCCACGG GCTCCTCTGA GTCTCAAGCT CTCACACAAG GTACAGACGA GACAGCAAAG TCCAGCCACT 000480 000481 CTCTGGGGCC CTGTGGCCTT ATTGTCCAGC GGCCACCTGG GCGTTGTGTT GACATACTTG GTGCAGTGAT TTAATACCCG 000560 000561 GTGTCAGGCT GATGTGGAGG GTCATTCCCA TTTCTCTAGC TCACCAGCTG CCTAGCTGAG CCAATCCTGG GAAACAGAGA 000640 000641 GGGTAACAGA GCTACCAGCA TGTCCCCACA TAGTGGTCCT GCCTGCTGCT ATTGGCTTCA TGTGGGTTCA CAGCTGCCCA 000720 000721 GAGCAAACAT AGTCAATGCT CAGAGCCTCC TCAAGGAGCT GAAGTCTCAG CATCAAGCTA TGAATGGTCC CACTCACTAC 000800 000801 AAACTCTGAT CGCTCCAAAC CATTCCCTGC TCAGCACCCT AAAGCCTTGC AGTTGGGGAA GCTGACTGAG GGGCCGGTGG 000880 000881 GGAAGCAGAT CCAGGGGCCG GTGGAGGAGC AGTAGGGACT GGCCCTTGAG TTCTCATGCA GCCCACAGCA TCCTGTGAAG 000960 000961 CAGCAGCCAG GTTCTGTGGG CACAAACGGC CAGGGTTCCA GTCCAGCTTG GCTGTGTGAT ATCCCCTCAC CCCACAGTGC 001040 001041 CAAGTGAAGA GACTTACCCA CCCTGGGTCC TGGGAGGAAG CCAGGTAGAC TATAAAGTCC TCTACGTGCC TGAAGGAATT 001120 001121 TCAGTGGACT GGTCATGCTA GATCCTCACA GAGGGACTTC CCTGCCCGGT ACCAGCTAGC TCCTAACAGG AGGTGGCAGG 001200 001201 CCACTGGGCA AGTGATCAAC AGGCCTGTCA ACAGCTCAGT CAAGTCCCCA GCCCCAGTGC TGACCACTGA CTTCTATGCC 001280 001281 AGGCCTGGCG CTGCGACACA CAGAATCCCA CGCGGTACAC AGATATCCAC CCTCCTCTGT GGCTGGCCTC TCACTCCTGT 001360 001361 GCTCCGTGGC TCTGGCTACT GGGAAGAGCC AAGCAATTTC ATGTGTCGGG TCATGCTCAG GCTAAAGCTA CAGCTTCTGA 001440 001441 AGTGGGATTA TGGGCTCAGC ATGTGGCCTC GGTAAGCCGA CTCTTTATTG ATGACTTTCA GAGGCCTGAT GCTTCTCTGC 001520 001521 CAACTCAGCA CATAGCAGCC GCCTCTGAAT GGCTTTTTAA ATAAAGCTGG GCTAGCTCTC TCCAGGCCAA CTGGCCAATC 001600 001601 ACGTCGTTTG TTTTCCCACA TGCAGAGCTC ATCCATAAAC ACTAAGCACG TAATGGGCAC CTACCGTGTG CAGTACCTGT 001680 001681 TCCAGGCAAG TTGGAGGAAG CAAAGATGAA AAAACTTGAG CCATTAAAGC CAATTCTACC AGGAGCCATG CTGAGCCTCT 001760 001761 AGTTTCACTT CTGTTCTCTG GGCCTTCTGC CTGAACCTCA GGCACAACTA AAGGAGATGC CTCCTCCATG CGGCCCTCTC 001840 001841 TGCCTGTCCT TCCCCCTCTG CCACCTGCCA GCATGGACAG TTTGTTACCT GCAGCCTGGG CTCAGCTTTT GTTCCATTTC 001920 001921 CTGGAGCTGC CTTGGCAAAG CACCATAAAC TGGGTGGCTT TAAACCACAG GAATGTATTA TCTCACAGTT CTGGGGGTCA 002000 002001 CGAGTCTAAA ATCAAGGTGT TAGTAGGGCC ATGGTCCCTC TGAAATCTCT AGGGAAGGAT CCTACTTTGT TTTGTCCTGG 002080 002081 CTTCTGGGGG TTTCCTGGCA ACACTTGGGG TCCCTTGGTT TATAGCGGTA TCACCCCAGC CTCTGCCTTT GTCTTCATAT 002160 002161 GAGTTTCTCT CCTCTGTGTC TGTGTCTTCA CACGGTGTCT TCTCTGTGTC TGTGCCCAAA TTTCCCTCTT ATAGGAAAGA 002240 002241 ATACCAGTCA TTGGATTACG GCCCACTGTA ATCTGATATG ACCTCATTTC CCTTTAATTA TACCTGCAAA GGCCCTATTT 002320 002321 CCAAATAGGA GCACCTTCAC AGCGTCCTTG TGGACATGAA TTTGAAGGGA TGCAATTCGA CCCAGTACAG TTACCACCTG 002400 002401 TCCTGAGCAC GTGGCATTCA GCAGCAAGCA GAGGCCCATT CCATTCTGCA AGGCATGCCC CCTGTGCCAT CCCTGTGTAC 002480 002481 TCTGTGTGTT TCAGCAGTGC CATGTCGGTT TCACTCCCAT GTGAGGGGAC GTGTCAGGAG GAAGCTGGGC AGGCAGTTGT 002560 002561 GTGTGTAGAC ACCCACCACG GGCCATCATT ATAAAGTTCT GTCCTTTGCA GCTGCTGCCA GACATGTCAA ATTCTCTCTA 002640 002641 TCAAAAGCTG GATCTCTTTA TTAAATAGTG AAATGACTCC TTAGATAACA TGTGGCACAA ACTGGAGAGC TGGTGACACT 002720 002721 CAGAGCTATC CTGGCTGGCA GGCGGGCAGC GGCGTTCCTT CCTTCCTTCC TCCAGCAGTG CCCCTCTGGA GAAGGCCTTC 002800 002801 CCTGGCTGGA CCAGCACTGT CTGTTCAGAG CCATAGGCAG CTGAGTCCTG GGGCTCCCCC TTGCCATCAC CCCATTATCC 002880 002881 TCTCGCTGGC CTCCGAGGTA GTCGGAAAGG GCTCTGAGGA TGCTGGCAGT GGGAACTAAA GGCTTCCGGA GCATGGGAGC 002960 002961 TGCAGGCCAA CTGCCTTTAC TGCTGCCTTC TCAAGCTGGT TTTCTTCCTT TGCTGAGATC GCCCTTGGCG TCTCCACAGT 003040 003041 GTGTTTCTGT TTTTCCTTTT GGTGTTATCG CCACTTTGCT GATTTTCCCC TAACAAGTGC TCTAGGTCCC AGAGGGCAAT 003120 003121 GTTTTTCTGG ATTAGAAAGT AGAACAGCTG ATTTCTTGCC CACCTGTTTC TCAGACATCA GAAGCTGCAG AGAGGCTGAG 003200 003201 CTTGACTCAG TCCCCCCCAT CCCCAGATGG CTTCATTTTA CACCTAGGCT GGTTCCAGGA CCCTAAATTG GGCTCTGTCT 003280 003281 GCTTGTATGG GTGGCCCTAG GATTTGCATC GGGACCTCAC AGTCTATAAA ATCCATGGCT GTGGAATGGA AAATGGTGCA 003360 003361 GCACTTTGGG AAATAGATTT AGCAGTTTTT ACAACAAGTA AACATAAATG TACCACACAA ATCAGCAATT CCACTCCTAG 003440 003441 GCATATACCT AAAGAGAAAG AGAAATATAT GTCCAGTCAA AGGCTTGTAC ACAGATGTTC ATAGCAGCTT TATTTATCAC 003520 003521 AGCCAAAAAG TGGAAACAAT GGAAAAGCCT CTCGGCTGGT GAATGGATAA ACTAAATGCA GTAAATCCAT ATAATGGAAT 003600 003601 ATTATTAGAT CACAAAAACG AATGGAGTGA TACATGCTGC AATATGGATC TACCTCAAAT ACATCATGTT AAGTGACAGA 003680 003681 AGCTAGACTC AAAAGACCAC GTATTGTATG ATTCTATGTA TAGGAAATTT CCAGGACAAA TCTACAGAGA CAGAAAGATT 003760 003761 AATGGTTGCT TCAAGCAGAG GTTGGAACTA ACAGTGTCTG CAAAAGGGCA CAAAGAATCT TTCCCAGGGT GATAGAAATG 003840 003841 CTCTAAAGTT GGCTTGTTGT GATGGTTGCA CAATTTGATA AGTTTACTAA AATTGTTCAA TTGTACACTT AAAACGGGTG 003920 003921 ATGTTTACGG TATATAAATT ATATCTCAAT AAAACTGTTA GGATAATTTA AAAAAAAAAA AAAAAA |
Predicted Small Protein
Name | NONHSAT069462_smProtein_2369:2593 |
Length | 75 |
Molecular weight | 7821.7985 |
Aromaticity | 0.0675675675676 |
Instability index | 41.6 |
Isoelectric point | 5.83563232422 |
Runs | 11 |
Runs residual | 0.00599868160844 |
Runs probability | 0.0479677538501 |
Amino acid sequence | MQFDPVQLPPVLSTWHSAASRGPFHSARHAPCAIPVYSVCFSSAMSVSLPCEGTCQEEAG QAVVCVDTHHGPSL |
Secondary structure | LLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLLLEEEEEELLLEEEELLLLLLHHHHHL LEEEEEELLLLLLL |
PRMN | - |
PiMo | - |