NONHSAT069549
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT069549 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2195 nt |
Genomic location |
chr2+:24150155..24223690 |
Exon number |
8 |
Exons |
24150155..24150485,24181171..24181225,24191789..24191905,24194146..24194284,24199839..24199945,24205766..24205903,24207543..24207701,24222542..24223690 |
Genome context |
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Sequence |
000001 AGCTCTCCCC GACCGCAGGG CTGGGGCGAC CAGAAAAGCC AGACTAATCA GGACGAGTTC GGGCGTGGAA TTGGGCCTGA 000080
000081 AGCCCTCATG CCCAGCCAGG CCTGAATGCC CCAGACCCCA CCGTCACCCC CGTGGCCTGG ATGGAGCAGG GGACGGCCGG 000160 000161 CGAAGGCGCG GGGTGGAAGG GGAGCGGCGA CGAAGGCGCG AGGAGCTGAC TGGGAATCCC CAAGCTACCC GAGGCAAGAC 000240 000241 ACTGAACTTG AGTCGCACTT TTCATGCCTG TAGAAATGAG AATGACAGCT GTGATAAAAA AAAAATTCAT CTGGGCGGTA 000320 000321 TCTGGAACTT GTAAGGCGAA AGAGAATGAA AGACGTAGAT AACCTCAAAA GTATAAAAGA AGAATGagtc tctctctgtc 000400 000401 gccaggctgg agtgcagtgg catgatctcg gctcactgca acctccgcct cccaggttca agcgattctt ctgcctcagc 000480 000481 ctcctgagta gctgggacta cagGGTTTGT GAAACAGGAT CTGATAATCA ACCTCTTGGT AATAATCAAC AATCAAATTG 000560 000561 TGAATATTTT GTTGATAGCC TTTTTGAGGA AGCTCAGAAG GTTAGTTCCA AATGTGTGTC TCCCGCTGAA CAGAAGAAAC 000640 000641 AGGTAGATGT AAATATAAAA TTATGGAAAA ACGGATTCAC CGTCAACGAC GATTTCAGAA GTTATTCCGA TGGTGCCAGT 000720 000721 CAGCAGTTTT TGAACTCCAT CAAAAAGGGG GAATTACCTT CAGAATTACA GGGAATTTTT GATAAAGAAG AGGTGGACGT 000800 000801 TAAAGTTGAA GACAAGAAAA ATGAAATATG TTTGTCTACG AAGCCTGTGT TCCAGCCCTT TTCAGGACAG GGTCACAGAC 000880 000881 TAGGAAGTGC CACACCAAAA ATTGTTTCTA AAGCAAAGAA TATTGAAGTT GAAAATAAAA ATAATTTGTC TGCTGTTCCA 000960 000961 CTGAACAACT TGGAACCCAT TACTAATATA CAGATCTGGT TGGCCAATGG AAAAAGGATT GTCCAGAAAT TTAACATTAC 001040 001041 TCATAGAGTA AGCCATATCA AAGACTTCAT TGAAAAATAC CAAGGATCTC AAAGAAGTCC TCCGTTTTCC CTGGCAACAG 001120 001121 CTCTTCCTGT CCTCAGGTTG CTAGATGAGA CACTCACACT GGAAGAAGCA GATTTACAGA ATGCTGTCAT CATTCAGAGA 001200 001201 CTCCAAAAAA CTGCATCTTT TAGAGAACTT TCAGAGCACT GATTTTTGAT AGACTAAGTG GAAAATTTGC AGAGAAATGA 001280 001281 TGGTTGTAAG TGGACATGCA AACCAAAATT GGGGATTGGA GAAGTCAGAC TCACTAGACT TTTGGTTCGA GTACTATTGA 001360 001361 ACTCTCTCCT GATGAGAAGA TGTTTAGATA AGTACAAGTT AAGAAAGTAG CATATGACTG GAAACTATAT TCAGTGCACT 001440 001441 TTCTCCAAAA GACTACCCAG AAAAATAGAC TTATTTTCAA ATACCAGTTA TCAAGATATA TTAAATAGCT GTATTGTTTA 001520 001521 GAATCTTAAT ATGGTATAAA TTAGCATATG TATTCACAAT ATTCATTCAG ACATCATTCC CAGACAGCAG GGATTTATTT 001600 001601 AAATGTTAGC TGTCTGAGTT TTTAAATAGC TAATACgacc gggtacagtg gttcatgcct gtaatcccag aacttcggga 001680 001681 ggccgagaca ggcagatcac gaggtcaaca gattgagacc atcctggcaa acatggtgaa accccatctc tagtaaaaat 001760 001761 acaaaaatta gctgggcgtg gcggtgcgca actgtagtcc cagctactcg ggaggctgag gcaggagaat ctcttgaacc 001840 001841 tggcaagtgt aggttgcagt gagctgagat tgagcaactg tactccagct tggcgacaga gcaagacccc ctctcaaaaa 001920 001921 taaataaaat aaagtaaaat aaatataaat aaTTGTggcc gggtgcaatg gctcatgcct gtaatcccag cactttggga 002000 002001 ggctgagatg ggaggatcac ttgaagccag gagtttaaaa ccagaatgat caacagagtg agacccctgt ctatatattt 002080 002081 ttttaattta aaaaataaaa gaataaaatt GTGTAGCTCA GTATAGTATC AAGATTAATC TGCCTACTCA CATTTCTACA 002160 002161 CTTTATAAAA ATGTAATAAA AGAAAATTAT CTTTC |
Predicted Small Protein
Name | NONHSAT069549_smProtein_662:781 |
Length | 40 |
Molecular weight | 4851.6261 |
Aromaticity | 0.153846153846 |
Instability index | 56.5025641026 |
Isoelectric point | 11.7178344727 |
Runs | 5 |
Runs residual | 0.0405354449472 |
Runs probability | 0.0266560678326 |
Amino acid sequence | MEKRIHRQRRFQKLFRWCQSAVFELHQKGGITFRITGNF |
Secondary structure | LLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLEEEEELLL |
PRMN | - |
PiMo | - |