NONHSAT069808
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT069808 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1659 nt |
Genomic location |
chr2-:28112323..28113981 |
Exon number |
1 |
Exons |
28112323..28113981 |
Genome context |
|
Sequence |
000001 GTATGATTCC CCTCATCAGG CAACAAGGAA CTAATACTCG GGGTTTACAG GAACCAGGGG ATGGGCCAGA TATGGAGAAA 000080
000081 GAGACGCCTC TGGCCTTGGG GGCTCGTTCT TGAGGGAATC AGCGTGATGG GGATGAGAAG GGCATCTTTG GAACGGGGGC 000160 000161 CTTCTCCATA GGAAGAGGAG GCGAGTCCCC TGGCCATATT TAAACCACAG TTCTCCACGC CACCTGTGCG ACTCGGGATC 000240 000241 CAACCTCCCC GCACCAGCCC CAGTCCAGGT ACCTGGAACT TAGTCCGATC GGTAACCGGC GACTACGTGG GGTACAGGTA 000320 000321 CCCGAGCGCG CCCCCGACAG ACGCACCGAC CTGCGCGCGC GCCGCGGGCA GGATGCGTGC GCACTCCCCG GACGTCCCGC 000400 000401 CCCGCCCCCT CTGCGGCCCC GAAGCTGGGC GGCGTGCGCG CCCCCGCGCC GCGCCGAGCC GGGCGCTCGG AAAGGCGTCC 000480 000481 CCGCGGTGCC TGACAGTTCC TTCCTCAGCG CCTGCCCCGT GAGTGACGAG GAGCGCGGAG TCTCGCCATA TCAGGAGGGC 000560 000561 CCTGTTACGT GAGGCTGTGC ACCGAGACTA TTCCAGGAAG AAGAGGGGAC ACTTGGTGGG CGGGGTGATT TCGGGCAGTC 000640 000641 AGGTGGGCGA CCCGCGTAGG CGTCTGAAAG GCCCGCGTCG TTAGGGAGGG CAGGAGTGGC GTCTCTGGTT ACGGGGTCGG 000720 000721 GCAAAGGGCA GAGGTCACCG TCCAGGTTGG ACAGCAGCAC CTTTGAGCGA TGGCGGCGTC TGGGGAACCC CAGAGGCAGT 000800 000801 GGCAAGAGGA GGTGGCGGCG GTGGTAGTGG TGGGCTCCTG CATGACCGAC CTGGTCAGGT TAGTCCGGGG CCAGTTACTC 000880 000881 AGTCTGCGGC TCGGGGGAGG AGGCGTGCCG TGCGCTATGC GCCCAGTGGA GCTTTTGGGC GCTGGGTCTC CAGGGATAGA 000960 000961 CAGTGCTAGC TTTGGGTATG AGCTGCAGGT TTTCGAAGCC TTCAGCCTAC CTTCCTGGCA TGAAAGAACT TGAGTATATA 001040 001041 AAGGTAAATC TCAGGGGAGG GGACGTAATA GGCCAGGGTT TAGTGAAAGC TCTAATATTA CTCAAAGCGC TCCCCAAAGA 001120 001121 CCTGCCCTCC AAAGACTTGC GCCCCCAAAG ACCTTTCTTG GCCCGGCTGC TGAGCCTTTC CCCAAACGAG CCAGGGAACT 001200 001201 TTGCCCACGT CATTTTACCT CCGAGAATGT GCCTACCTCA CAGGGTTGTT GTGAGGACTA AATGAAGTAA AGTGTTTTGT 001280 001281 CAAGCGTAAC ATTATCCAAA TTGGGTATTA TTCGTCTGAG CTTATTGTAT AAAATAATGA GTTGAGCAGA AATCAAAAAG 001360 001361 ACTGTCACCT TTCACCATGT TGATTGTCGG CATTACTGCA GTATTTTATA TTTACAGCGT ATTTTTCAGC AAGCCAAGTA 001440 001441 TGAATCAAAA TAAAAACATA AACACAGTAT TTACAACCTC TGAAAACGAT GATCAAATTA TGATAGAAAA TATGCCAAAT 001520 001521 GAAAATTGTT GAGTTAGGTC AGTAAGATTG AGTAGACAGA TCCTTCTGAT TTTTCTTTTT TTTAAATTAA GGTAGCTTTT 001600 001601 CTGATTACAA AAGTAATGTA TGTTCACTGT AAAATTAGTA ATAAATTCAG ATATTCCAA |
Predicted Small Protein
Name | NONHSAT069808_smProtein_977:1264 |
Length | 96 |
Molecular weight | 10612.6711 |
Aromaticity | 0.0526315789474 |
Instability index | 51.5336842105 |
Isoelectric point | 10.3496704102 |
Runs | 12 |
Runs residual | 0.00273518441774 |
Runs probability | 0.0440514043456 |
Amino acid sequence | MSCRFSKPSAYLPGMKELEYIKVNLRGGDVIGQGLVKALILLKALPKDLPSKDLRPQRPF LARLLSLSPNEPGNFAHVILPPRMCLPHRVVVRTK |
Secondary structure | LLLLLLLLLLLLLLLLEEEEHHHHLLLLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLHH HHHHHHLLLLLLLLEEEEEELLLLLLLLEEEEEEL |
PRMN | - |
PiMo | - |