NONHSAT069999
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT069999 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1629 nt |
Genomic location |
chr2+:33107766..33151756 |
Exon number |
4 |
Exons |
33107766..33107893,33123607..33123709,33127130..33127190,33150420..33151756 |
Genome context |
|
Sequence |
000001 ACTTAATTGC TGCCTAGAGC TCATAGAAGG ATCTCACAGC ACTGCTCCAG GGCACTGAAG CTTACAGTGA AAGCACATTT 000080
000081 TCAGCAAGTA CTGAAGATTG TCTCCACGTT GGCTGGTTTG AAACTGTGGT GTATGTTTAA GCTCAGGCTG GAAAAGGATC 000160 000161 ACTGAAAGTC ACTTGGATGG TGTCTCGTGT GTCTGTGATG AGCTTGCTGT TGCTTTCTTT CTCCTTGACA GATGAGAAAA 000240 000241 CAGTGGCTTC AAAGGTTAAA CAACTTGTCT TCGATTGCAC AGCTAACAAG AGCTCACTGT CCAAAGGGAG TCTCTCTCCC 000320 000321 CGGTCCACAT GCTGAGGCTT GCTCCAGAGT GAATGTGTGC ACTGGAAAGA ACCCACACAG GCCCCCTGAG AGCTGTCAGC 000400 000401 CTTGCCAGGC TTCTGTGAGA TCCCTGGGTC CGAGTAGCCA AGCTGGGAGG AGCACCATTT GCCCACTGAC TCTTGGGCAA 000480 000481 CGCTGCAGCC TGCATCCCAG CCGGCAGAAG GCAGGTGGTA TCACAGCTGA GTTTACAGCC ACGGAAGGAA CCACTGTAGG 000560 000561 CTTTTAGTAG ATAATATGTT TTCTCTGCTT CAAATCCTTA TTTTGGTTGC TTAAAATTTC TGCAGAAAAC AAACAGCTTC 000640 000641 TGCCAAAATT GGCTCACAAA ATTAGCTTAC TAGTATAATC AGTTGTATAG CAAGTATTTA CTGAGTAGCT CTTGGAAGGC 000720 000721 AGTCAACACA AGAGGGATGG ATCATTCTTC CAGTTCATCA CACGTGGGTT GGACATGCTA ACAGTCCCCG ATAGCTATCA 000800 000801 GGCGAGTAAA TGGATGATCA CACAAAGGCA GAGGCATCGC AGAAGGATGC TAACTAGATG TCATGCGTCA AGGATACTAC 000880 000881 AGAAGGATCT CTTTGCTGAC AAGGAGGGTA CCTCTAAGGT TCCTTCAGAT GGGATGGTTC TCTGTTCACC GTGATCACTA 000960 000961 CTATGCAAAG GCCTGTGGGC CATTTAGGAG AAAAGCATTC AGTCCAATTC CACAGACACA GTGAGGATGT AATATGCCCT 001040 001041 AGGCATATAT GAGTGGATCC AAGGAGGAAA TACTCAGTCA CTACTGTCAA GAACTCATGA CCTGCTGCAG GGTTTGCCAA 001120 001121 ACTATGGCTT GTGGGCCAAT CTGGCTCACC ACCTATTTTA GTAAATAATG TTTTACTGGA ATCCAGACAC GCTTGTTTGA 001200 001201 TTACATATTG TCTATGGCTG CTGAGCACCC ACTATAAGGG CAAAGTTAAG TAGATAGAGA CTTTATCACC CACAAAACCT 001280 001281 AAAATATTTG ACTGGATGGC CCTCTACAGA AAAAGCCTGC GAACCTGTGG TCTTGTGGGA GGACACTGCT GGGCACAGTT 001360 001361 AACTCTAATT CTTGGCTGTA GCATCTTGAA TAGGGTGGCA GTCCCTGGCT GCTGAGGGGG ACAGCTGGAC GGCTGCCTCC 001440 001441 CAGGGGCATT TCCATGACTT GCAGGCCCAG AAACTAGACT TGGGCATGAC CACAGAGTTC TTGATGGACT GAAGATGCCC 001520 001521 AAACCACAGA CTGACTTGTA GGCTAGAAAT GAACATGTGG GGTGGAATAG TCCTTTTGGG GACTAGAATA ATTTCTAGAG 001600 001601 AGCCACCCTT TCTACATGAT ACGGCGCAC |
Predicted Small Protein
Name | NONHSAT069999_smProtein_176:334 |
Length | 53 |
Molecular weight | 5581.5065 |
Aromaticity | 0.0384615384615 |
Instability index | 55.0384615385 |
Isoelectric point | 9.59112548828 |
Runs | 6 |
Runs residual | 0.0349847892221 |
Runs probability | 0.0413648943061 |
Amino acid sequence | MVSRVSVMSLLLLSFSLTDEKTVASKVKQLVFDCTANKSSLSKGSLSPRSTC |
Secondary structure | LLLLHHHHHHHHHHLLLLLHHHHHHHHHHHHEELLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |