NONHSAT070042

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT070042

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3773 nt

Genomic location

chr2+:34902470..34950118

Exon number

3

Exons

34902470..34902994,34938646..34938840,34947066..34950118

Genome context

Sequence
000001 gtgaaactcc ctgccctgtt ctgtttctct ctgaccactg gtgcatgcag cccctgtcac gtattccttg cttgctgaaa 000080
000081 tcaatcacaa ccctttcatg tgaaatcctt agtgttgtga gctcttaaaa gggacagaaa ttgtgcactt ggggtgctcg 000160
000161 gattttaagg cagcagcttg ccgatcctcc cagctgaata aagcccttcc ttctacaact tggtgtctga gaggttttgt 000240
000241 ctgcggctcg tccttctaca tttcttggtc ccctgaccgg gaatcgaggt aactgaggga tggccgaggt agccccttag 000320
000321 gcagcttagg cctgccctgt ggagcatccc tgcaggggac tctggccagc ctgagtgacg tgatccaaag agcactcctg 000400
000401 ggtagaaaat tgcctgggtg gaacgcctca ccagaacagc acgtagcagg cccctgtgga ggattaacac agtggctgaa 000480
000481 caccgggaag gaactggcac ttggagtccg gacatctgaa acttgaattg acaagccgac atcagtctcc agagtgaatc 000560
000561 caaggagtgg acccaagaca tttgtgttct gtgatgtggt ggcatgttac ctgtcatctc cgatgcataa ctcctaaagt 000640
000641 gcgtctgggg cagttgtaca gattgcagag gataatactc aagatgttct ccaaggccaa ctagtcatca gtttattcat 000720
000721 GTTTCTGGGA TTGGATTCAT GAACTCATCC TTTGAACTAT TTCAACAAGC TTTTTCATGT AACTAATCTG CGGAAGGTAG 000800
000801 AAAGGGGAAA ACTGTTGGGT GCTAAAATGA CAACTGGTTC AAGGTACAAT GGCGAATATT TTTATTTCTG CAACTTTTCT 000880
000881 TAGAGGTTGG AAACTGGACT GGGCAGGAAG ATTCCTTTTT GTAAGATTAG TCTCCAGTTT TCATCAAGCA GTTTAGTGGG 000960
000961 GTATTTTAGG CCCAGTTCCC TCTCCACAGT CCCCAAAGGT CTTCTGTTAA CTTTAAATCC GCAAAGAGAG AGATCTCTGC 001040
001041 CAAGCAGCAA CTGCAAGAGC ATGTGGGTCA ATGTTACCAG CAGACACTCA AAGCCCATTC CCTTTACTTC AACACCGCTT 001120
001121 TATAAATTAT CTTAGAGACG TTGTCAGGTT GGTATTAGAG GTGAGTGGTC ATGACTTCAC GATTTCTCAT CTTTCTGAAT 001200
001201 GCATAGTggc tgggagtggt ggctcatgcc tgtaatccca gcagtttggg aggccgaggt gggcagattg tttgaccaca 001280
001281 ggagttcgag accagccggg gtaacatggc aagaccccaa tctctaccaa aaaaaaaaaa aaaaaataca aaaattgtct 001360
001361 gggtgtggtg tgcatgcctg tagtcccaag tcccagctac tctacttggg aggctgaggc agaaggatca cctgagccca 001440
001441 ggaaggccaa ggctgcagtg agccctgatg gtgccactgc acttgacctt gggcaacaga atgagaatga gaccctgtca 001520
001521 aaaaaaaaaa aaaaaaaaaa aagaaaaaaa aaaagaaaga aaaagagaga aagagagaga aagaaagaaa gaaaAGAATG 001600
001601 CATAGTGAGA TTTTACAGTA AAACTCTTTC TTAGAGGCTA AAAACTCTGG GGATCTCACG ATGTGGGTAC ATTTCTAGAG 001680
001681 ATAATATTTT AGATCTCTAT AGATATTATT TTAATACATC TTTTTCTTTT TGGTTTGACT GTGTATCATA TGGCTTTTCT 001760
001761 TCTTGGAAGT TATCAAACTT CTCCCTAACT AAGGTCCTTG CATATGCTGA CCTGTTTGAC ATACTCCCAC TCTGGTCTAC 001840
001841 TCATTCTTCA GGTATCATTT TCATTCCTGT CACTACCCCT TAACCCAACC CAGACAAGGT TATTGTGCAC TGAATCATTT 001920
001921 CAAAATGCCA CTTTAAAAAT GAGTAAATAT TTATGTAATT ATGTGTTGAA TATACCTCCT CTTTACAAGC ATATAAGTCT 002000
002001 ATGATACAAG TCTATGCTTG TCTCTTCTAA TTCTGGTACA TCATGTGATA TGAGAACCAT GGTAGGCAAT CAATAATGCA 002080
002081 GAGACGAAAT GTTTTTATCT TAGAGAGACT CTCACAGAAG TTTCTAGTTT AGAGATGCTT CACTGAAGTT TATGGCCTCA 002160
002161 ACTTCCTTGG GTCTTGATTA CTATCAGTGG ATGCAGTGAT GGAGGGTAGG TAAAATCCAA TGTTATCTAC AAGTTCTAGA 002240
002241 CTACAgccaa caaacttttt ccaaaatagg ccagataata aatatattag gttttttggg ccatgaagtc tctgctgcaa 002320
002321 ctactcagct ccacatttgt agtggaaaag cagttataga tgaaacataa aatgaattag tgtggctgtg ttcaaaaaaa 002400
002401 gctattttca aaaacagcca gtgggaaagc tttggtcctt gagccatagt ttgcAAAATT TTGTTCTAAA CAGTAATTCC 002480
002481 TTCACTGGAG ATTTTAAAAA CAGAAAGAGA ATACAGACAG CTATACATGT TCTGGTCTAT TCCTGTTCTC TAGTATAGCA 002560
002561 GCACCTTAAA ATTGTATTAC TAACAGAGTA CAGGAGATTG TATGGAAGGC CTATAGTGAT GACTCTTTCA TCAGCTTTGT 002640
002641 TCGTAATAAA TTAACTGTAT GTGTTTCAGA GAGTCATATG ACTCCAAAAT GATTTAACAC ATGCTGCTAC AAGCCAGCCT 002720
002721 TCTTAAGTTT TTATTAAATC TTGATTGTTT TGGTCACATA ATTTTTATAT TAAATCCTGT GATACTCATT GTTTTTCTAT 002800
002801 AAAAATCATC ACATTTCAAG TGTTAGGTAG TGTGTATAGA ACTGACAGGT AATAATTTTG ACAGGTATGG GATTAAATAG 002880
002881 AATCCATCCA AAACCATTTA CTTTCCTTAT ACATTATAGC AGAAGTGGCT AAATTAGAGG GTTGTTCCTG TCTCCATCAT 002960
002961 GCACTTCTGT CTTCTACTCC ATCCCTTGTA TATATTGGGG ATATTTTGAG CCAAGTGCTA ACGTTACTTA CACAGCTGAT 003040
003041 ATTTCAGATT AATATGAATG CTGACCGTTT GCCCTCACAA CATGCCCACA ACACATGGAT TATACAGGGG AATTAATCGT 003120
003121 TAGCAATGAA TTCAACATTT AGCTTTTAAC ATTTTTATTC TGCCAGTAAG GCCAGAGAAT AAATCTATTC TTTCTAGCAG 003200
003201 GCAATTATTA ATCTCTGGCT TTCACAAACA GCAAACGGCC ACTGAATCCA GCTGACAGCA TATATTTATT TAAAGATTAA 003280
003281 TAAGGAGAAT TATTTATATT AGTTAAAACG TATTCTTCAT TATGTTTAAA TCTTTCCAGA GCTATGGCAG GAGTTGGATT 003360
003361 GGAGTATACA GAATGGATTA ACTTATTCTA ATTGTTATCT AAAGTAGAGG CATTGAGCAC tgatatggtt tggctgtgtc 003440
003441 ctcaaccaaa tctcatcttg aatcagttcc cataatcccc acgtgtcaag ggcgggacca ggtggaggta actgaatcat 003520
003521 gggaacggtt tccctcatgc tgttctcatg atagtgagtg agttctcaca acatatgatg gttttataag cgtctgtcat 003600
003601 ttccgctgct gttactcatt gtctctcctg atggcctctg gagagatgcc tttgccatga ttgtgagttt cctgaggctt 003680
003681 cctagccatg tggaactgtg agtcaattaa acgtcttttc tgtataaatt acccagtctt ggatatttct tcatagcagt 003760
003761 gtgagaacgg act
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Predicted Small Protein

Name NONHSAT070042_smProtein_1373:1633
Length 87
Molecular weight 9917.3584
Aromaticity 0.046511627907
Instability index 60.5756976744
Isoelectric point 10.2050170898
Runs 9
Runs residual 0.0349704963554
Runs probability 0.0453787120454
Amino acid sequence MPVVPSPSYSTWEAEAEGSPEPRKAKAAVSPDGATALDLGQQNENETLSKKKKKKKRKKK
RKKKRERERKKERKECIVRFYSKTLS
Secondary structure LLLLLLLLLLLHHHHLLLLLLHHHHEEEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH
HHHHHHHHHHHHHHHHEEEEEEELLL
PRMN -
PiMo -