NONHSAT070045
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT070045 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3311 nt |
Genomic location |
chr2+:34935518..34950118 |
Exon number |
3 |
Exons |
34935518..34935580,34938646..34938840,34947066..34950118 |
Genome context |
|
Sequence |
000001 ggactgtgaa tgcagcccgt gaaaaagagg gttttcggaa gcttgacatt tatgagggtg aggaattgac aagccgacat 000080
000081 cagtctccag agtgaatcca aggagtggac ccaagacatt tgtgttctgt gatgtggtgg catgttacct gtcatctccg 000160 000161 atgcataact cctaaagtgc gtctggggca gttgtacaga ttgcagagga taatactcaa gatgttctcc aaggccaact 000240 000241 agtcatcagt ttattcatGT TTCTGGGATT GGATTCATGA ACTCATCCTT TGAACTATTT CAACAAGCTT TTTCATGTAA 000320 000321 CTAATCTGCG GAAGGTAGAA AGGGGAAAAC TGTTGGGTGC TAAAATGACA ACTGGTTCAA GGTACAATGG CGAATATTTT 000400 000401 TATTTCTGCA ACTTTTCTTA GAGGTTGGAA ACTGGACTGG GCAGGAAGAT TCCTTTTTGT AAGATTAGTC TCCAGTTTTC 000480 000481 ATCAAGCAGT TTAGTGGGGT ATTTTAGGCC CAGTTCCCTC TCCACAGTCC CCAAAGGTCT TCTGTTAACT TTAAATCCGC 000560 000561 AAAGAGAGAG ATCTCTGCCA AGCAGCAACT GCAAGAGCAT GTGGGTCAAT GTTACCAGCA GACACTCAAA GCCCATTCCC 000640 000641 TTTACTTCAA CACCGCTTTA TAAATTATCT TAGAGACGTT GTCAGGTTGG TATTAGAGGT GAGTGGTCAT GACTTCACGA 000720 000721 TTTCTCATCT TTCTGAATGC ATAGTggctg ggagtggtgg ctcatgcctg taatcccagc agtttgggag gccgaggtgg 000800 000801 gcagattgtt tgaccacagg agttcgagac cagccggggt aacatggcaa gaccccaatc tctaccaaaa aaaaaaaaaa 000880 000881 aaaatacaaa aattgtctgg gtgtggtgtg catgcctgta gtcccaagtc ccagctactc tacttgggag gctgaggcag 000960 000961 aaggatcacc tgagcccagg aaggccaagg ctgcagtgag ccctgatggt gccactgcac ttgaccttgg gcaacagaat 001040 001041 gagaatgaga ccctgtcaaa aaaaaaaaaa aaaaaaaaaa gaaaaaaaaa aagaaagaaa aagagagaaa gagagagaaa 001120 001121 gaaagaaaga aaAGAATGCA TAGTGAGATT TTACAGTAAA ACTCTTTCTT AGAGGCTAAA AACTCTGGGG ATCTCACGAT 001200 001201 GTGGGTACAT TTCTAGAGAT AATATTTTAG ATCTCTATAG ATATTATTTT AATACATCTT TTTCTTTTTG GTTTGACTGT 001280 001281 GTATCATATG GCTTTTCTTC TTGGAAGTTA TCAAACTTCT CCCTAACTAA GGTCCTTGCA TATGCTGACC TGTTTGACAT 001360 001361 ACTCCCACTC TGGTCTACTC ATTCTTCAGG TATCATTTTC ATTCCTGTCA CTACCCCTTA ACCCAACCCA GACAAGGTTA 001440 001441 TTGTGCACTG AATCATTTCA AAATGCCACT TTAAAAATGA GTAAATATTT ATGTAATTAT GTGTTGAATA TACCTCCTCT 001520 001521 TTACAAGCAT ATAAGTCTAT GATACAAGTC TATGCTTGTC TCTTCTAATT CTGGTACATC ATGTGATATG AGAACCATGG 001600 001601 TAGGCAATCA ATAATGCAGA GACGAAATGT TTTTATCTTA GAGAGACTCT CACAGAAGTT TCTAGTTTAG AGATGCTTCA 001680 001681 CTGAAGTTTA TGGCCTCAAC TTCCTTGGGT CTTGATTACT ATCAGTGGAT GCAGTGATGG AGGGTAGGTA AAATCCAATG 001760 001761 TTATCTACAA GTTCTAGACT ACAgccaaca aactttttcc aaaataggcc agataataaa tatattaggt tttttgggcc 001840 001841 atgaagtctc tgctgcaact actcagctcc acatttgtag tggaaaagca gttatagatg aaacataaaa tgaattagtg 001920 001921 tggctgtgtt caaaaaaagc tattttcaaa aacagccagt gggaaagctt tggtccttga gccatagttt gcAAAATTTT 002000 002001 GTTCTAAACA GTAATTCCTT CACTGGAGAT TTTAAAAACA GAAAGAGAAT ACAGACAGCT ATACATGTTC TGGTCTATTC 002080 002081 CTGTTCTCTA GTATAGCAGC ACCTTAAAAT TGTATTACTA ACAGAGTACA GGAGATTGTA TGGAAGGCCT ATAGTGATGA 002160 002161 CTCTTTCATC AGCTTTGTTC GTAATAAATT AACTGTATGT GTTTCAGAGA GTCATATGAC TCCAAAATGA TTTAACACAT 002240 002241 GCTGCTACAA GCCAGCCTTC TTAAGTTTTT ATTAAATCTT GATTGTTTTG GTCACATAAT TTTTATATTA AATCCTGTGA 002320 002321 TACTCATTGT TTTTCTATAA AAATCATCAC ATTTCAAGTG TTAGGTAGTG TGTATAGAAC TGACAGGTAA TAATTTTGAC 002400 002401 AGGTATGGGA TTAAATAGAA TCCATCCAAA ACCATTTACT TTCCTTATAC ATTATAGCAG AAGTGGCTAA ATTAGAGGGT 002480 002481 TGTTCCTGTC TCCATCATGC ACTTCTGTCT TCTACTCCAT CCCTTGTATA TATTGGGGAT ATTTTGAGCC AAGTGCTAAC 002560 002561 GTTACTTACA CAGCTGATAT TTCAGATTAA TATGAATGCT GACCGTTTGC CCTCACAACA TGCCCACAAC ACATGGATTA 002640 002641 TACAGGGGAA TTAATCGTTA GCAATGAATT CAACATTTAG CTTTTAACAT TTTTATTCTG CCAGTAAGGC CAGAGAATAA 002720 002721 ATCTATTCTT TCTAGCAGGC AATTATTAAT CTCTGGCTTT CACAAACAGC AAACGGCCAC TGAATCCAGC TGACAGCATA 002800 002801 TATTTATTTA AAGATTAATA AGGAGAATTA TTTATATTAG TTAAAACGTA TTCTTCATTA TGTTTAAATC TTTCCAGAGC 002880 002881 TATGGCAGGA GTTGGATTGG AGTATACAGA ATGGATTAAC TTATTCTAAT TGTTATCTAA AGTAGAGGCA TTGAGCACtg 002960 002961 atatggtttg gctgtgtcct caaccaaatc tcatcttgaa tcagttccca taatccccac gtgtcaaggg cgggaccagg 003040 003041 tggaggtaac tgaatcatgg gaacggtttc cctcatgctg ttctcatgat agtgagtgag ttctcacaac atatgatggt 003120 003121 tttataagcg tctgtcattt ccgctgctgt tactcattgt ctctcctgat ggcctctgga gagatgcctt tgccatgatt 003200 003201 gtgagtttcc tgaggcttcc tagccatgtg gaactgtgag tcaattaaac gtcttttctg tataaattac ccagtcttgg 003280 003281 atatttcttc atagcagtgt gagaacggac t |
Predicted Small Protein
Name | NONHSAT070045_smProtein_911:1171 |
Length | 87 |
Molecular weight | 9917.3584 |
Aromaticity | 0.046511627907 |
Instability index | 60.5756976744 |
Isoelectric point | 10.2050170898 |
Runs | 9 |
Runs residual | 0.0349704963554 |
Runs probability | 0.0453787120454 |
Amino acid sequence | MPVVPSPSYSTWEAEAEGSPEPRKAKAAVSPDGATALDLGQQNENETLSKKKKKKKRKKK RKKKRERERKKERKECIVRFYSKTLS |
Secondary structure | LLLLLLLLLLLHHHHLLLLLLHHHHEEEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH HHHHHHHHHHHHHHHHEEEEEEELLL |
PRMN | - |
PiMo | - |