NONHSAT070139
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT070139 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3726 nt |
Genomic location |
chr2-:37911626..37915992 |
Exon number |
2 |
Exons |
37911626..37915318,37915960..37915992 |
Genome context |
|
Sequence |
000001 ATGCCAGGCA TTGTCCTAAA ACAAAAGATG AAGcacttct ccttgctgcc accgtgtgaa gaaggacgtg tttgcttccc 000080
000081 cttccaccat gattgtaagt ttcctgaggc ctccccagcc atgctgaact gtgagtcagt taaacctctt tcctttataa 000160 000161 attacctggt ctcaggtttg tctttattaa cagcgtgaaa atggagtaag acactgggga tggtagaaga tgaggttaga 000240 000241 gaggtaggca cagccaggga atgacagaat atttttgtag tcagctgagt actttgtatt ttatcctgat ggctatgaga 000320 000321 agccacATGC GGTGGTCCAA TCTATTTGAC TTGGTGACTA ATGGGATCTG GGGAGAAGGT GTAAAGGAAC CAGGTGAGAT 000400 000401 ATGATGACAG CCTCAACCAA AGATATAATT GACAAATAAA TGGCCTCATG TGATCCCATA GGTTTCACTA GGCAGGAGAA 000480 000481 GAAAATAGAA TAATTCTCCT ATCAGTAATA TTATTCTCCA ATGACTACTC GGTACCTTTT TTCattattt atgtaaattt 000560 000561 tattgcccct attcaatcat caggtccttg aaggaagatc agagagacct gtgtctaatt catgtttgtg ctgctcacac 000640 000641 tttctaacac agatcttgca catatcaaag atgctataaa tatatattga ataaatATTA ACACAGAATT TGTGGGGGGT 000720 000721 GGTGGTGCCA GAGTCAGTAT TTAAACCAAG AGAAAGCCCT TCAACTCCCT CCTTTGCAGA GAGATTACTC ATTCTGCCAT 000800 000801 ACTGCACATC CACAAGACAT TTACAGCCTA CCAGAGACCT TTAAAGAAAG TTTCATAACA TCCCTGCTGA CCATCTTTTT 000880 000881 GGAGATGGTG GGTACTAGAG TCTATATAAT TTCTACAAGA TTCTAAAGTA GACTGCCAGA CATTAGAAAA TGATCTGAAT 000960 000961 TTATGAGTCA GTCATCCACA AGAGCTACAT GTTTGTCAGT GGCAGGGCCA AAATCAACAG GACCTTCTTG CCAAAGTTTC 001040 001041 GAGATACCCA CTCACCTATT TATTGATATC TAAGGGTTCA GGGTCATCAG GATTCTCTAA AGTCATCCAT TTGCAAACAT 001120 001121 GTTCCAAGAC CAGCAGTATT TTGTATATGA AAGCTATCTT GCAATGTAGA CTAGCTGAAT GAAATGTCTG TCTTTGTCAT 001200 001201 GAACTTTCAT GTTTTCATTT CAGTAATGCA AACCACAACA GTGCTATGAT CAACCCTCAT CATCAGTATA GAAGAAATTA 001280 001281 TCTAGTCCTA ACCCATGTTC TTACTGGTTT AATCATTTAT TTCCAGCTTT CTGCTCTTTG TTTATTATTT ATGTAAGATG 001360 001361 TTGTAGCTCT GTATGCTGAG TTAAAATGTA ATCattttat taatattttt taaaaagtta aatttCTAAC CATAAATTAT 001440 001441 AGGATGATTA GTTAAAGACA GAAATCAGTT TTAAGCAAAA TAACTAAGGG CATATCCTCT TCCCAGCATT TTttattaaa 001520 001521 gaagtatttt attttaaaat atttctagac ttaacagaaa aattgcaaag ataatacaga gtcccacata ccctataccc 001600 001601 attctcactt attaacatct tacattaata ttgtccattt gtgataagta atgaaccaat attgatatat agtttttaat 001680 001681 taaagtctat catgtattaa gatttcctta gtttttaact aacattcttt ttctgttcca ggatcccatc aacataactc 001760 001761 attaaattta gtggttgtgt ctctttaggc ccttgtttgc catgactgtt aagacttccc ttgcttttta tgaccttgac 001840 001841 agttttgagg agttctcctg tcatttctcc tcacatattt tgtagaatgt cccctaattg ggaattatat gatggctttc 001920 001921 tcgtgattag gctggagtta tggatttatg agatgaagac cacagaggta aaatgtcatt ctcatcatat atcaaggctg 002000 002001 cgtactatca acaagattta tgactgctga tattgacctt aatcacctgc ttggggtggt gtttgttagt tttctccact 002080 002081 gtaaagttac tcctctcatc ttttatttgt attttatatt attgttatta tttgtttatt tgttattatt ttagagacag 002160 002161 actctcactc tgtcacccag gctagagggc agtggtgtga tcatagctta ctgcaacctt gaactcctgg gttcaagtga 002240 002241 tcctcccacc tcgacttcca caagcgctag gattacagcc cttctccccc actgcacctc cccacatttt tatattatac 002320 002321 tctggaagga agccacaagg catagcacac aattaagaag cagcgattta tactccactc tttgatggca aaatatctac 002400 002401 agaaattatt tgaacttctt ctgcccggga gatttatcta ttgtccccca ttgatttatt tattcaatca tttgtttgta 002480 002481 tcattatggt ctcatggata tctattttgc actttcaata ctattttatt ttgttgctca agttgttcca gccctggcca 002560 002561 tggagaatac attcagttgg ctcctgtgtc cctgtaacat agccctgtca ttattggatt tggttgagca ctttcttact 002640 002641 ttcaggagct acaaaatgct ctaggttcgt cttgtatatt tcctgctcca tcctagagtc catgtctcca aggagcttgg 002720 002721 ttcttttatt ggagaatgta ttagaaacca agacctggac atgctccttg ttgcaaaggt gttattgctt ctaggctcag 002800 002801 ctgacagaga aataacatat atgtgtgtaa attaacccat gtctatacac atatatctac aaatccttct ctttgtaact 002880 002881 atctgtatct atattaagct aaatatgagt tgatactgat gtctccaatc ccaacccagt agcacataga taattctaac 002960 002961 cttctccccc ttgcttgttt cctctccctc ctacaatgaa gaacctggct tctgccatca gccattcgtt tatttcattg 003040 003041 ttcaattcca gtctcctgta gagtacttcc ataattgtta agccataccc acatagaaat aactttataa gtttgagtgc 003120 003121 ttatacagag ctctttttgc ctttaatctt acagactcga ttcatttcca aacttactta cgtaagcatt ttctctcaca 003200 003201 tccccttcag tacgcttatt tcatgcattt gtaatacagt tagattattt tgccatattt tacatttcat cctggaatcc 003280 003281 tccaaccttc taaatatttt ttaaattttg tataattaag tttctctatg ccatgaagtt ctatgggctt tgacaagtgc 003360 003361 atagtgtcat gtatctagta ttatcacaat atcataaaaa gatagtttta ccacccttta aaaaatccct agtggttgac 003440 003441 ctattcaatt cctttcacca agagtttctg aaaccactgg tctatttgcc atctccataa gagttttgcc ttttccagga 003520 003521 tattacttaa atggaattat accttatgta gccttttaag actggctttt ttcacttagc aacatgcatt taagattcat 003600 003601 ctatgtcttc ctgtggtttg acagctcatt ccattgtgtg gatgtgccac agtttattta gccattcacc tactaaagtt 003680 003681 tacttctagt ttttggtagt tgtaaataaa actgctataa aattct |
Predicted Small Protein
Name | NONHSAT070139_smProtein_2384:2596 |
Length | 71 |
Molecular weight | 8053.4852 |
Aromaticity | 0.185714285714 |
Instability index | 51.3471428571 |
Isoelectric point | 7.65203857422 |
Runs | 13 |
Runs residual | 0.0408769448373 |
Runs probability | 0.0446917505741 |
Amino acid sequence | MAKYLQKLFELLLPGRFIYCPPLIYLFNHLFVSLWSHGYLFCTFNTILFCCSSCSSPGHG EYIQLAPVSL |
Secondary structure | LHHHHHHHHHHHLLLLEEELLLHHHHHHHHHHHHHHLLEEEELLLEEEEEELLLLLLLLL EEEEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL LLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooooooooooooo oooooooooo |