NONHSAT070163
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT070163 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1947 nt |
Genomic location |
chr2-:38349077..38351023 |
Exon number |
1 |
Exons |
38349077..38351023 |
Genome context |
|
Sequence |
000001 ACATGCGAAG AAAATGCCCA TGCATTTCTT TAAGCAGAAA TATAAGTTAG TGAATTTGTT TCTTCTTGAT AAAATGGTTA 000080
000081 GAATTTGCTT AGAAATTCCT TTTATCATAA AAGTAAAAAT TATCAGCTTT AACCTTCTCA TTTGTCTCCT ACTGCTTCTT 000160 000161 TTCTTGTTCT TTATTCTCAT CCATCCCCTT CTCTGTCTTT GCCTCTACTC TTCCTCTATT CCTTCATAAG AATCTAAACA 000240 000241 ACTCCTTTAA ACATCAATTC AAATGTTCTT CCCTTGGATA GAGATCACTT CCATCCCCTT CATAACTAGC TGGGCCTAGT 000320 000321 ACCTTTGGGT TAGCAATTTT GCCAGAGATG TTGGAGAAAA AGGGGGTAGC ATTTCCTCTT GAAAATCCAG CCTGCAAGGC 000400 000401 ATTTACAATC TCATGCTGGT TTCGTAAGGC CCTGCTGTCC CTCCAGAATA GAGGCCCACA GCACTCACTA GGTACCAGGC 000480 000481 ATGGTGAACT TGCTTGCCCA AGCTCTCTAG TAGGTGGCAG ATTTACCCAG GTCTGCCTGA CTTTAGAGCC TATTCTTTTA 000560 000561 ATCATTGTAC CTTACTGTCT TTATAGACAA GGTCAGGCTC TCTATGCTTC TGTGAGATAA TTTTCCCTAG GAGTGTAAAT 000640 000641 AGTTACTATA GAGACACTAG ATGCCACCTG CTATAGCCCT CAGAAGTGGC ATCAGACTAT GCCTGGGCTT TCTGTTTTAA 000720 000721 GGACAAGGAA GAATGAGTGT GACAGTGAAA GGTTGTATTT GTAAAGGCTG GAAGAGCAGA AATCCCCAAG TGCTAGAGAA 000800 000801 AAGAATGTGG ACAAGTGTAT GGTATCCAAT CATAGTATGT TAGAGCTGAG TTGGGCTTTA AAGATGATCT CCTCTAACCC 000880 000881 CTTTATTTGC AGTTGAAGAC GTTGAGGATC TGAGACATTA AGTGAATTGT CTGAGGACAC ACAGCCAGTT TCTTAGATGC 000960 000961 AGAGCCAAGG ATGAATTTTT TTCATTCAGA CTAAGCTGTT TTTTGCAGTC CACCTTTACT CTACTTGGGG TTCATTTCTT 001040 001041 TTTAAGAAGT CTCAAAGATT AGAAAATTGA GTCATTTTGA GCAATATAAT GTCATATTGT ACAATTCTGC TGAAAGTAAT 001120 001121 TTTAATAGCA ATGCCGGCAG ATCTCCCAAA TCCATGGGTT TCAAAATATT TCCGCCTTTT GCTAAGCTAA TATATAGAAT 001200 001201 TTCAAAACCA TATTTATACC ACATACAATT TCCAAAGAGC TGGGCAATTT CCTATAAAAA CTCAGCTGTG CACTGATTGC 001280 001281 CAAGTTGGAA AACTCAGGGT TTCCTGGCAA CACCCACTTG GGCTCTAGGG AATGCAAGCT TCTCAGCAAA CAACCTCTCC 001360 001361 TGACTTACGA GCTCCATCGG CAGCCACGAC CCGAGTCACA GCGGCCCTTT CTGATGTTCT TGTCTCTGTC GCTTATGTTT 001440 001441 CTCAAGAACC TGTAATCTTG CCTTAATCCC TCACCAGCTG AATACCTCCT ACATGCTAAA CTCCTGGAAT GAAAGGTCCA 001520 001521 CATTTCTCTC ATGCTAGGAG TTTGGGACCA GAATTCAGAT GAACTCATTG CTAGTACTGG TTCAAAAGCT AATGAGCCCT 001600 001601 CTAGATTCCC AGGTCCTTAG TTTCCTCATG GGTAAAATAT AGACAATAAC TCCTACCTGT TCATCTTTCA GGGCTTTTCC 001680 001681 AAAGATTTTC AACATCTGAA ATTCACAGGA TCATGGAGAC GAACTAAACC ATCATGGAGA CTAACTAAAC CAGATGCATC 001760 001761 TAGCCCCTCA TGTTAGAGTT GAGAAAACAG AAACCCAGGG TTTGGGGACT CCCTTGAAGT CATCAAGTTC CTGTTGATGG 001840 001841 CAAAATCAGG ACCAAGCTTC TGATCCTCCC AAATATTCCT TCACTTCTCA GTGCTGCCTG TGATGAGAAA GATCAAAGCA 001920 001921 TGCATACAAT TATAAATCAT GACACAG |
Predicted Small Protein
Name | NONHSAT070163_smProtein_347:619 |
Length | 91 |
Molecular weight | 9977.7065 |
Aromaticity | 0.0888888888889 |
Instability index | 50.77 |
Isoelectric point | 9.40167236328 |
Runs | 13 |
Runs residual | 0.00458553791887 |
Runs probability | 0.0406084817849 |
Amino acid sequence | MLEKKGVAFPLENPACKAFTISCWFRKALLSLQNRGPQHSLGTRHGELACPSSLVGGRFT QVCLTLEPILLIIVPYCLYRQGQALYASVR |
Secondary structure | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLEELLLLLLLLLLEE EEEELLLLEEEEEELHHHHLLLEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LHHHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo oTTTTTTTTTTTTTTTTTTiiiiiiiiiii |