NONHSAT070528
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT070528 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1588 nt |
Genomic location |
chr2+:47043807..47046597 |
Exon number |
3 |
Exons |
47043807..47044051,47044509..47044572,47045319..47046597 |
Genome context |
|
Sequence |
000001 AGGTAAATAT TCCTCACGCC AGCAGGTGAG GAGGCTGGGG CCAGATGACA GCTAGTGAGG GAGCAGAGAC AAGACAAGGC 000080
000081 Gagcctgtga cagagcgaga ccctgtctca aaaaacaaaa acaagaCATG TGAGCTTGGA CTCCAGTGTG GAATCCCATG 000160 000161 TCCGCTCAGT GCACCTTTCT GCCGCTGAAA GTACAAGAGG AGAGGGGAAA CCCACAGGTG GAGCTGACCA TGAGGACTGT 000240 000241 CACAGGTGAG GGTGAGAGGA AGCTGGAGAT GGAAGATGCA GCTGGGGGAA CTCACCAGGC AGGTCTCAGG GAACTCTTTG 000320 000321 AATAAGAGGA CACCAGATCA TGCCTGCAGT TCCAGCCCAG GGTGAGGTTG AAACACTTAT GCTTCCTATT TAAAGCCACA 000400 000401 TCTCATTCAT CATTTCAGCA CCAATCAACA ATTAAACCTG ATTCAATGGA GCCCTGACAG CTAATTTAAA CCGAGCCTCA 000480 000481 CAATCGGCCT GACACTGGCT ATTTAAAACT CTGTCCTGGC CTCTGGGGCC TTTCGGAACC AGGACTGTTT GTCCTGCCAA 000560 000561 GAGCAAAGCC CCACCCGCTG TGGCCTGGAT CCCCATGTAT GTAGTGTGCA GGGTCTGTTC CAGCCATCAC TGTCTCTGCC 000640 000641 TGGCTCCCTG TAGGGCTGTG GGAGGGTTCT GGGAGAGGTC GGGAATGCCA GGAGGAGGAA TTGGTGAAGC AAAGAAAAGG 000720 000721 CAAAAGCCCA CTGAGAGGTC TAATGAGCCC CAGGTGCACA CACTTGTGTT GTGTGTGGCT TTCTTCAGGC CCTGGGCAAA 000800 000801 TGTGGCAGCC TGGGGtgtat tgggagcatc agaacccagg tcaagtcctg actctgcaat ccataaacca gttccgtgac 000880 000881 cttgcccagg tccttcctta gtttcctcac cagtgtggtg agaataacaa AGATCTCTTC TCAAACCGTC TCCCTGGGAG 000960 000961 TTAAGAGATT CCCCCATATC TGGTGATCCC AGGTAAAGCA CATGGAAAAC CACCAAGTCC TAAAGCAGAG AAGTTCTGAG 001040 001041 CAGAGCAGGC CTGAGCTTGT ATGGGGCCTG GTGCTGTGGG GCACCATGGC AGATTCCAGC CTGTGGTCAT TATTGGGTTG 001120 001121 CCTGGTGTCC CCATGGCTCT CTAGCGCTGA TGGAAAACAG CCTTATATCA CTAAGTGTGG ACAATAACCC CTTCAGGCTg 001200 001201 agaacttggt tcagacttgt gtagtcagag acatcttcct ggaggcagtg gacttgagcc aagctttgga ggctgcaata 001280 001281 attgagtaag tcggccaggc tcacacctat aatcctagca ctgtgggagg ccaaggcaag tggatcacct gaggtcagga 001360 001361 gttcgagact agcctggcca acatggtgaa accccatctt tactaaaaat aaaaataaaa aaaattaact gggcatggtg 001440 001441 gtgggcgcct ataagcccag ctactcggga gacttaggca ggagaatcgc ttgaacccag ggggtggaag ttgcagtgag 001520 001521 ccgagatcgt gccacttcac tccagcctag gtaaaagagc aaaactctat ccaaaaaaaa aaaaaaaa |
Predicted Small Protein
Name | NONHSAT070528_smProtein_1001:1186 |
Length | 62 |
Molecular weight | 6833.7603 |
Aromaticity | 0.0819672131148 |
Instability index | 73.362295082 |
Isoelectric point | 6.52032470703 |
Runs | 11 |
Runs residual | 0.0275108347466 |
Runs probability | 0.0518861107097 |
Amino acid sequence | MENHQVLKQRSSEQSRPELVWGLVLWGTMADSSLWSLLGCLVSPWLSSADGKQPYITKCG Q |
Secondary structure | LLLLLEELLLLLLLLLHHHHHHEEEEHHHLHHHHHHHHHHHLLLLLLLLLLLLLEEEELL L |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL L |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooo o |