NONHSAT070528

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT070528

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1588 nt

Genomic location

chr2+:47043807..47046597

Exon number

3

Exons

47043807..47044051,47044509..47044572,47045319..47046597

Genome context

Sequence
000001 AGGTAAATAT TCCTCACGCC AGCAGGTGAG GAGGCTGGGG CCAGATGACA GCTAGTGAGG GAGCAGAGAC AAGACAAGGC 000080
000081 Gagcctgtga cagagcgaga ccctgtctca aaaaacaaaa acaagaCATG TGAGCTTGGA CTCCAGTGTG GAATCCCATG 000160
000161 TCCGCTCAGT GCACCTTTCT GCCGCTGAAA GTACAAGAGG AGAGGGGAAA CCCACAGGTG GAGCTGACCA TGAGGACTGT 000240
000241 CACAGGTGAG GGTGAGAGGA AGCTGGAGAT GGAAGATGCA GCTGGGGGAA CTCACCAGGC AGGTCTCAGG GAACTCTTTG 000320
000321 AATAAGAGGA CACCAGATCA TGCCTGCAGT TCCAGCCCAG GGTGAGGTTG AAACACTTAT GCTTCCTATT TAAAGCCACA 000400
000401 TCTCATTCAT CATTTCAGCA CCAATCAACA ATTAAACCTG ATTCAATGGA GCCCTGACAG CTAATTTAAA CCGAGCCTCA 000480
000481 CAATCGGCCT GACACTGGCT ATTTAAAACT CTGTCCTGGC CTCTGGGGCC TTTCGGAACC AGGACTGTTT GTCCTGCCAA 000560
000561 GAGCAAAGCC CCACCCGCTG TGGCCTGGAT CCCCATGTAT GTAGTGTGCA GGGTCTGTTC CAGCCATCAC TGTCTCTGCC 000640
000641 TGGCTCCCTG TAGGGCTGTG GGAGGGTTCT GGGAGAGGTC GGGAATGCCA GGAGGAGGAA TTGGTGAAGC AAAGAAAAGG 000720
000721 CAAAAGCCCA CTGAGAGGTC TAATGAGCCC CAGGTGCACA CACTTGTGTT GTGTGTGGCT TTCTTCAGGC CCTGGGCAAA 000800
000801 TGTGGCAGCC TGGGGtgtat tgggagcatc agaacccagg tcaagtcctg actctgcaat ccataaacca gttccgtgac 000880
000881 cttgcccagg tccttcctta gtttcctcac cagtgtggtg agaataacaa AGATCTCTTC TCAAACCGTC TCCCTGGGAG 000960
000961 TTAAGAGATT CCCCCATATC TGGTGATCCC AGGTAAAGCA CATGGAAAAC CACCAAGTCC TAAAGCAGAG AAGTTCTGAG 001040
001041 CAGAGCAGGC CTGAGCTTGT ATGGGGCCTG GTGCTGTGGG GCACCATGGC AGATTCCAGC CTGTGGTCAT TATTGGGTTG 001120
001121 CCTGGTGTCC CCATGGCTCT CTAGCGCTGA TGGAAAACAG CCTTATATCA CTAAGTGTGG ACAATAACCC CTTCAGGCTg 001200
001201 agaacttggt tcagacttgt gtagtcagag acatcttcct ggaggcagtg gacttgagcc aagctttgga ggctgcaata 001280
001281 attgagtaag tcggccaggc tcacacctat aatcctagca ctgtgggagg ccaaggcaag tggatcacct gaggtcagga 001360
001361 gttcgagact agcctggcca acatggtgaa accccatctt tactaaaaat aaaaataaaa aaaattaact gggcatggtg 001440
001441 gtgggcgcct ataagcccag ctactcggga gacttaggca ggagaatcgc ttgaacccag ggggtggaag ttgcagtgag 001520
001521 ccgagatcgt gccacttcac tccagcctag gtaaaagagc aaaactctat ccaaaaaaaa aaaaaaaa
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Predicted Small Protein

Name NONHSAT070528_smProtein_1001:1186
Length 62
Molecular weight 6833.7603
Aromaticity 0.0819672131148
Instability index 73.362295082
Isoelectric point 6.52032470703
Runs 11
Runs residual 0.0275108347466
Runs probability 0.0518861107097
Amino acid sequence MENHQVLKQRSSEQSRPELVWGLVLWGTMADSSLWSLLGCLVSPWLSSADGKQPYITKCG
Q
Secondary structure LLLLLEELLLLLLLLLHHHHHHEEEEHHHLHHHHHHHHHHHLLLLLLLLLLLLLEEEELL
L
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL
L
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