NONHSAT070699
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT070699 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1920 nt |
Genomic location |
chr2-:53990098..53992017 |
Exon number |
1 |
Exons |
53990098..53992017 |
Genome context |
|
Sequence |
000001 AAATAATTAA ACAAGATAAT TTAAAAAGGT AAAAGTGTTA TGAAGAAAAT AAAACAAAGT AGAGATAATA AAACAGATGG 000080
000081 GATAGACAAA AATGGTGTGC TACTGCACAT CTCTTTACAT CTCTGCATTC AGTGACTTCA TGCTTGGGAT CGGCCATGGT 000160 000161 AGGAGTATTT ACACCACAGA AACAAGCCAG TGCTACAAAC CAGTGCTATA AACTGGGCTT TCTTCCCTCT GGACAGCTAG 000240 000241 TTATTAAATG TTAACCAGCA CACTACTGAG TGAAGGTCAT TGACTAAAGG CGAGATTCTG ACATTTAGTA TAGAGGGGGT 000320 000321 AGGAAGAAAA CAAATGGTGA CTGAGCATTG CTTTGTGATA GTCATTGTGC CACATGCTCA ATTTATCTTC TTTATCTAAT 000400 000401 ATTTATAAAA ATGGTGTTAG AGGCAGTATT ATCCTCATTT TATTGGTGAA AAGACCAAGG CTCAGAGAAG TTGACTTGTA 000480 000481 AAAGGTTACA TAATAAACTA GGGTATTTGA TTTGAACCCA TTTCTCTGAC TCTAAAGCCC TTTTTTTTCC TCTCATACCA 000560 000561 AGCTTCTAAC ATTTAATTGA ATGAATTTAT AGCATTCAGT TAAAATGAGG TTGACTATAA TACTCTGCAT TGTAACACTC 000640 000641 AGAACCAATT TCATTTCATT GATCGTGGAA ATTCAGACCC TCTTTCCTGC ATACTTGTCA TCACCAGGTA TAGGTCCTTA 000720 000721 AAATATAAAC TTCTGGGTCC ATAGCCCATC AGAACTACTA ATTTGTTACC TGCTGGACGG GAAAGGAAAT AATCTTTACA 000800 000801 TTGTTTTTGG TAGTGGTAGG TGTTTTTTTT GTTGTTGTTG TTTTGTTTTT TTCTTTTTTT TGTCTTAACA GGTAAGAGAT 000880 000881 GGTAAGGCTA AACTTCCTAA ATCATAATGC AGGAAATTTG TCATGATTGT TTTTAAAATC ACATGTTCAA GTGTCTAGTG 000960 000961 TCTATTATAG TTGAGTGTTT GAAGATAGTG GAAAAATAGA TGTTATTCCT CTAATTTCAA ACGCTTAAGA TATGTTTTCA 001040 001041 GAATCTGTTT GAAGTTAACT ATAAAGCTTG AGTTCCCAAA CTATTTTTAG TAACAAAGAC ATGAGTTTGA ATATCCTTTT 001120 001121 CTAGGCAAAA AGCTCATTTC CAATATACTG TTACATCTCT TCTTCATATC GGAATAGTGT AGTTTATGTT ACAGATTTTT 001200 001201 TTCATCTGCT GAGTAAACTT GGGCATGCTT TTGACTAAAG GCATTTGAAC TGGCTGTTAA ATTCATCTCT ACAGTTGTCC 001280 001281 TGCCATATCC ACAGGGAATT GGTCCCAAAA TGTCCACGGA CACCAAAATT CATGGATGCT CCTCAAGTTC GGCAGTCTGC 001360 001361 CCTGAAGATA GGAAAACGTC CTATACACAC ATACAAAAGG TCAGCCGTCT GTATCTGTGG GTTCCACATC CTACAAATGC 001440 001441 TATTATCTTC CATCCCAGTT GGTTGAATCT GCAGGTGCAA AACCCGTGGA TACAGAAGCC CGACTGTATT TCCTTTTTTT 001520 001521 CTGAGACAGA GTCTTGCTCT GTTGCCCAGG TGGGAGTGCA GTGGTGCGAC CTCAGCTCAC CACCACCTCC ACCTCCCAGA 001600 001601 TTCAAGCGGT TCTCCTGCCT CAGTCTCCCA AGTAGCTGGG ACTACAGGTG CACACCACCA ATGCCTGGCT AACTGTCTCA 001680 001681 CTTTGTTGCC GAGGCTGGTC TCAAACCCTT GGCTCAAGTG ATCCTCCTGC CTTGGCTTCC CAAAGTGCTG GGATTACAGG 001760 001761 TGTGATGCAT CACACCTGCT GTCTTTTATT ATATAATTTT CCTACCTCCC TGAGGTTTAT CTAATATTAA TACACTGTCA 001840 001841 GAGATTCCTA AAAGATAATT AGTGCACCCA AATAAGAAGG TATGTAGGCC TACACAAATA AAATGGAAAT ATCTAAAATG 001920 |
Predicted Small Protein
Name | NONHSAT070699_smProtein_1331:1465 |
Length | 45 |
Molecular weight | 4864.8254 |
Aromaticity | 0.0454545454545 |
Instability index | 83.6045454545 |
Isoelectric point | 10.0560913086 |
Runs | 6 |
Runs residual | 0.0267379679144 |
Runs probability | 0.0446623093682 |
Amino acid sequence | MDAPQVRQSALKIGKRPIHTYKRSAVCICGFHILQMLLSSIPVG |
Secondary structure | LLLHHHHHHHHHHLLLLLLLLLLLEEEEHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |