NONHSAT070792
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT070792 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2386 nt |
Genomic location |
chr2+:55705577..55712077 |
Exon number |
2 |
Exons |
55705577..55707573,55711689..55712077 |
Genome context |
|
Sequence |
000001 GTTTGGTTCA TGCAGATTCA TTATACTATT TCCTCTACTT TTGTGTATGT GTGAATTCTC CACAATAAAA AGGTGTTTTA 000080
000081 AATCCTAAAA AAACAAAAAT CTCTGAAACA GAGAGTGTAG TGAGTGTAGT TTAGGTCACA TGCTTACCCC TTGACTATGT 000160 000161 CAGAGGGTGA AGGAAGAAGC CTCTAGGGAC TCCTTTGGTT TCTGTAGTAG GAGAGCATTT GTATTTATCA TCCTGACAAT 000240 000241 GAGACACAAT GGGGGTGAGG TAATTCTCCC AAAAGACATT GGGGTGCAAT TAGGAAGAGG GATGGAGGCT GGGTGTCCAT 000320 000321 ATAATGACAA CTATCCACTT CTGTGCATGA CAGATGGGGC ACTTTATCAA CTTTCCTCCC TCATCTCTTA TCTCCTCCAC 000400 000401 TACAGCCTGC ACTCCAGCCG GGCCAGCAAC CTTGTGCCTT TCTGTGCCCT GCTCTTGACT GTGTTGGTGC CCTGATGAAA 000480 000481 GTCTACTCAT CCTGCAGACT CAATTCAGAC ATCATCTCCT TCGACTTTGT AAGCAGAAGG TGGTAGATTT TGGATGGCTC 000560 000561 TTGACTCTTC ATCTCACAGT GTATTTACAG TAGTGGTCCT GCATCAAAAT CAGCTGACAA ACTGGTTAAA ACACATATTG 000640 000641 CTGGGCCCAA CCCTTAGAGT TTCTGTTTCA GTAGGTCTTG GGTGGGGACC TGAAAATTTG CATTTTTAAG TTCCCAGATG 000720 000721 ATGCTGATGC TGCTGGTCCA GGGACTGCAT TTTATGAACC TCTGCTTTGG AACATTGGTG TCCAAATCTG ACTACGTACC 000800 000801 AGCCTCAAAT GTAGAATGTT AAAAGTATAT AACTTCCTGG ATTGGCTGTA GGCTTGAAGA ATCAGATACT CTGGGAGTGG 000880 000881 GATCCAGGAA CCTGCATTTT GAAATAGATT CCCAGCTGTT ATTTCTGCAG TGGTCCTGAC AATATTTTGG ATAGTTACTG 000960 000961 GGGACCACAG CATCTGAGGG CACTGATCAG TCAGACCACC TCCCCCCACC CTTTAGGCAA AGTGACAGAG AGGCTGGTGT 001040 001041 ATTTCTTCCT AACAGGATGG AAGCAGCCCT GAAGAAAATG ATGCTTTCTT ACTGGTTAAA GGATTATAGT GGGCCAGGCA 001120 001121 CAGTGGCTCA TGCCTGTAAT CCCAGCACTT TGGGAGTCTG AGGTGGGAGG ATAACTTGAG CCCAGGAGTT CACGACCAGC 001200 001201 CTGGGCAACA AGGTGAGACT CTGTCTCTAC AAATAATAAA AAAATGAGGT AGGTGTGGTG GCTCACGCCT ATAGCTACTT 001280 001281 GTGAGGCTGA GGTGGGAGGA TCACTTAAGC CAGAGTGGTC AGGCTGCAGT GAACCATGAT CGTACCACTG TACTCCAGCC 001360 001361 TGGGCAGTAT AGTAAGACCC TGCCCTGTCT CAAAAAAGAA TTACAGTGAA GATTAATATA ATCTCACACA AATATTCAGA 001440 001441 AAGTACCATT GTTAGTACTT TAAAATTTTT AATTGAAATC AGATGTCAAT TTCTACCTCT TAAATGAGCA AAGCATTGAA 001520 001521 ATAATTTAAT AGGTTAGAGA TAGTGGGTTG AAATGCATAC TCTCATTTAT TACTATTGGC ATTATAAACT GATACGCTGT 001600 001601 CTTCGAAAAG CAATTTGGCA ACCTACATCA AGATCCAGAA AATGGGCCAA GATCCAGAAA ATAGGCCAGG TGCAGTAGCT 001680 001681 CATGGCTGTA ATCCCAGAAC TTTGAGAGGC CAAGGTAGGA GAATCACTTG AGGCCAGGAG TTCAAGACCA GCCTGGGTAA 001760 001761 CATAGCAAGA CCCTATCTCT ACAAAAAATA AAAAATTAGC CCATGTGGTG GTGTGTGCCT GTAGTCCCAA CTACATGGGA 001840 001841 GGCTGAGGTG GGAAGTTCCC TTCAGCCCAG GAGATTGAAG TTGCAGTGTG CTATAATGGT GCCACTGCAC TCCAGGCTGG 001920 001921 GTGAGAGAGC AAGACTCTCT TTTATATATA TATATATATT ATATATATAT ATAATATATA TATATGGCCG GGCGAGGTAG 002000 002001 TCTCGAACTA GCCTTCTATA GTGAGCATGT AGTGCAAGTG AGTCACCGTG CCTGGCCTGT AATTTTTTTT TTTTTTTGAG 002080 002081 ATAGAGTTTT GTTCCTGTTG CCCACACTGG AATGCAATGG CATGATCTCG ACTCACTGCA ACCTCTGCCT CCTGGGTTCA 002160 002161 AGTGATTCTC CTGCCTCAGC CTACCGAGTT GCTGTGATTA CAGGCATGCG CCACCACGCC CGGCTAATTT TATATTTTTA 002240 002241 GTAGAGATGA GGTTTCTCCA TGTTGGTCAG GCTGGTCTCA AACTCCTGAC CTCAGGTGAT CTCCTGCCTC GGACTCCCAA 002320 002321 AGTGCTGGGA TTACAGATGT AAGCCACCAG CCTATAATCT TTAAAGAAAA AATAATTAGT GTTTTA |
Predicted Small Protein
Name | NONHSAT070792_smProtein_1802:1999 |
Length | 66 |
Molecular weight | 7761.21 |
Aromaticity | 0.153846153846 |
Instability index | 40.2169230769 |
Isoelectric point | 9.69134521484 |
Runs | 13 |
Runs residual | 0.0497115384615 |
Runs probability | 0.0595369124782 |
Amino acid sequence | MWWCVPVVPTTWEAEVGSSLQPRRLKLQCAIMVPLHSRLGERARLSFIYIYILYIYIIYI YGRAR |
Secondary structure | LEEEELLLLLLLEEELLLLLLHHHHHLLEEEEELLLLLLLLLLEEEEEEHHHHHEEEEEE EELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHH HHLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTT TTiii |