NONHSAT071693
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT071693 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2164 nt |
Genomic location |
chr2+:74612845..74621009 |
Exon number |
4 |
Exons |
74612845..74612877,74618286..74618370,74618605..74618742,74619121..74621009 |
Genome context |
|
Sequence |
000001 GGCGGAGATG ATGCTTCAGT GGCTGCAGCA GGAAAAGCTC TTCGCCTCTC GGTACCTTAA GTATACCTGA GTAGCCAGTG 000080
000081 GTCAACATGG GTTTGCTGCT CTCCTCACTG CAATAAATGA CGGAAACCTG TAGCTCAGTA TGGATTCAGG GGCGCCTCAG 000160 000161 ACGCTCGCAG GAACGGAGGG GAGACCCTTG CAGTTCTGGA GGAACTCTAA GGCGCAGTCA CTCTGATCCC AGGAGAACAA 000240 000241 TGCTAGGCTG AAGAGCTGAG CCCTGACTGA AAACTGCGCA CCGACCGCAG CCGGGATTAC ATCAATCAGG CACAAAGCTG 000320 000321 GACACCTGGG ACAGGATAAG CGCACGCGCA CTGTGCCTGG GAAGCCGATT AGGACCATAA GAAATCGGCG TGTCGTGGCG 000400 000401 AGCGCCCTCT TTCGGCGGAG GGGAGAAAGC GCAGAAGGGC TGGAGGACTT ATTTGCAAGT GTTAAACTGC TAATTAAAAC 000480 000481 AATAGCGATA AACCATATCT CCTCCATTAG CCTGGGGGAG AAAATTAAAT GTTGCTGCTA CTCAGTGTTA CCTGTCATAT 000560 000561 GGGGATACAG GCATTCTCAT GCGCTTATGA TGGGAATGTA AAATACAAAT TTACATAATG GCATTTTAAA ATTTTAGACA 000640 000641 TAGGTTCAAA TTCTTTTTTT TCTGTTTTTA AGACAAGGTC TCGCTCTGTT GTCTAGACTG GAGTGCGGTA GCACGCACAA 000720 000721 TCATGGCTCA TTGCGGCCTT GACTTCTCAG GCTCAGGCCA TCCTCCCACC TCTCAGCCTC CGTAGTAGCT GGGTCTGCAG 000800 000801 GCGCGCACAA CCATGCCCTT TTAATTTTCG TTTTTTGTTT TTTGTTTTTT TGTAAAGACG GGGTTTCACA ATGTTGCCCA 000880 000881 GGCTGGTCTC GAACCCCTGG GCTCAAGCGA TCCAATCGCT TCGGCCTCCC AAAGGGCTGG AATTACAGAC ATGAGCCACC 000960 000961 GCACCCGCCT GGGTTCAAAT TCTAACTGCA ATTTACTAGC CGTGTGAAAT CTAGAGTTAC TTATTTACCC TCTCTGTGCC 001040 001041 TCTGTTTTCT TATTTGTTAA AGTGAGAATG TAAATGATGG TACCTATCTC ATTATGTTGT TAGAAGGATT AAGTTAATCC 001120 001121 ATGTAAAGAG CTGGAAATAT AACTATTGTA ATGTTATATT TATTTCAGTT AATCTCAGAT TTAAAACAAA CTGAAAAATT 001200 001201 CATAAAGTTG CTGTAAGGGG CAGTAAGCAG TAGAAGGGAT GCATTGAGTA TCCCCTTTAT TACTCCCCCC TTTTCCCTAT 001280 001281 TTCACCTTCT AAATATTTAT AATTATTATT TTGAATAGAT AATACGTTTA CATGGCTCAA AAATCAGAAC ACTATTTTAG 001360 001361 AATATACACA GAGAAACCTC CCTTCAACCC TGGTTCCCAT CGACTCCATC ACCCTTGCCT GCTACAGATA ATGCTTATTA 001440 001441 GTGTCTTCTT GTTTATCTTT TCAGTGTTTT GTGCAAATAT AAACTCATAT GAATATATAG TCTTACTCCT CCCATTTCTT 001520 001521 ATGCCAAATG TAGCATGCCA GATACAATTG GCATAAGTTC TGTTCACTTA ATCTATTCTG AAAATCTTTC TAAATCAATA 001600 001601 AATTAGAGAT CTTCCTCATT TTTCAGCTGC TTAGTACTCT ATTGCATGGA TACACATAAT TTATTAACCA GTTTCTTCTA 001680 001681 GTTACATACT TTATTTCCAG TCTTTTAGTA TCACAATCTT GCAATGAATC ACTTTGAACA TAATGACATT CCAATGTGAG 001760 001761 CAGGCATATC TCTAGGATAC ATCTTGGTCA AATAATAAAT GTATCTATAA TTTTAGTAGA AATGTCTTCC ATCTCCTTCA 001840 001841 ATTAAAGAAA AATAAAAAGT AAATATAAAG ACTTTAAAAG ATACTGCATA TACATATTTT TAATTGTCGT AAAGCATACA 001920 001921 TAACATGAAA TTTACCATTT TAACCATGTT TAAGTTCAGT GGCACTCAGA ACATTCACAT TGTTGTGCAA TCATCACCAC 002000 002001 TATCCATCTC CAGAACTTTT TCACCTTTCT GTACCAAAAA CAAACATGTA AGCAAACAAA ACCCTCTGTG ATGATCTGAC 002080 002081 AAAAAAACTA AAGTGTATGA TAGAATGTGT GTAGGTTATA TATAAATAAA ACACAGTTGG CCCTCTGCAA AAAAAAAAAA 002160 002161 AAAA |
Predicted Small Protein
Name | NONHSAT071693_smProtein_1331:1555 |
Length | 75 |
Molecular weight | 8658.2315 |
Aromaticity | 0.148648648649 |
Instability index | 49.7405405405 |
Isoelectric point | 7.77960205078 |
Runs | 9 |
Runs residual | 0.0210283454186 |
Runs probability | 0.0444365934562 |
Amino acid sequence | MAQKSEHYFRIYTEKPPFNPGSHRLHHPCLLQIMLISVFLFIFSVFCANINSYEYIVLLL PFLMPNVACQIQLA |
Secondary structure | LLLLLLLEEEELLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHH HHHLLLHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLL LLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToo oooooooooooooo |