NONHSAT071868
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT071868 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2925 nt |
Genomic location |
chr2-:79362629..79365553 |
Exon number |
1 |
Exons |
79362629..79365553 |
Genome context |
|
Sequence |
000001 GTTATACATC TCTACCATTA CCTAGCCTGA AAAGCCACCT CAGATTCAGC CAACAAGTAA GTGGGCATTA CAGGAGAAGG 000080
000081 GTACCTTTCA CAAGGGCTGT AATCTAAAAT CTTGGGGAAG ATACAGCGTC ATCTGTCCAA GAGGTGTCAG CAGTAACGAA 000160 000161 GCCTCAGTAG AAGCCAAAGT TATTTTGGAT TACTGAGCCT GTATAGTTTC CAGATTCTCA AGAGAAATAT ATGGGAATGT 000240 000241 AGATATCTCA GAGGACCTTC CTGCTGTCAG GAATTCAGAG GAGGAAATAA GGAAGGTAAT AGGTGCTCTG CTCTCATTCT 000320 000321 CTCAAACCCT CTTCCCTGTG TTTTCCTATA GAGATTGCTG ATTTGCTCCT TAAGCAAGAG ATTCACTGCT GCTCAGCATG 000400 000401 GCTCAGACCA ACTCATGCTT CATGCTGATC TCCTGCCTGA TGTTCCTGTC TCTGAGCCAA GGTGAGATTG TTTTCCCCAC 000480 000481 ACATACCTCC CACAACCCCA GCCCTGAAGC CCTCACTCTA TCCTCATGCA TATGAGTTCA CTTGAGAAAA AGCAGAGTCA 000560 000561 AGTTCAGGGG TTGTCTTGTG TTGTTCAGTG ATATTTATTG CTGATCTCAT CCCATTCAAA AACATCCTGA CCTCCCTAAG 000640 000641 GAGTTAGAGA TGGAACTTAG CATAACCCTT TATCAGTGAC CACTGCAGTT GGCATTGGTT TGTCATATTA ACACTACTCA 000720 000721 TGATGGGGGG GTTGAGGATG TCTGTTTGTA GACAGTCATT AGTGGAATGG GGAACTGAGG GGAGCTTTGT GTGTAGAGAA 000800 000801 ACTGGACAGG CTTGAGAAAG AAGCCTCAGT CCTTCAAGGA AGAAAAAGCC ATAAGTAAAA GGGACAATGG GGACACTTTT 000880 000881 CATGAGCCTA TTCATTGTGT GCTCTTGTCT TGAGCAAAGA CATCTTGAGA GCCTATAGGT AAGATGCAGA AGGGCAGAAG 000960 000961 TGACCAATCG CTTCGTGACC TATAGGATCC TTCTATTCCT ATAAAGAATC CTCAGAAGCT CCTACCTCAT ATTTTAGCCT 001040 001041 TTACCTTGCC CTGAGGGTCT TTCTTAATTG TCTCTCTTTT CCCAGGACAG GAGGCCCATG CTGAGTTGCC CAAGGCCCAG 001120 001121 ATCAGCTGCC CAGAAGGCAC CAGTGCCTAA GGCTCCCACT GCTACTACTT TAATGAAGAG CATGAGACCT GGGTTTATGC 001200 001201 AGATGTGAGT GAGGAGAGCA GTGTGGGAAG GGAGGCTCAC GAAGGGAGGG GAAGCTGCCA CTCTCCAGTG TGTTCAGTGG 001280 001281 CTGATATGAG ATGAGACTAA TCCCCTCCCT ATCCAATCAT CAGCCCAAAA CTTTCCAATC TACTTTATCC CATCATTCAG 001360 001361 CACAGAGATG CTGGTGGTCA GTGACAGCAT CATCAGGGAC ATTTCTGTGC TGTCCTTTTT CTGTTACATC CTCTGGGAGG 001440 001441 GCTCAATATG TCTCCCACAC TTTCCTCCTT CACTGAGTGC TCCATTTTCT TCTCCAACAG CTCTACTGCC AGAACATGAA 001520 001521 TTCAGGTAAC CTGGTGTCTG TGCTCACCCA GGCTGAGGGT GCCTTTGTGG CTTCGCTGAT TAAAGAGAGT GGCACCAAGG 001600 001601 ATAGCAATGT CTGGATTGGC CTCCATGACC CCCACCGGAT CAGTCTGCTG CATCTTCTAC CTCCTGATTA TCAGGTTCCA 001680 001681 GAGGGTCTGA TGTCTGGCAC CTCAAGCATC AGTTTTTACT ATATTATGAT AAAAGCAACC TCTCTATAAA TCATATAATG 001760 001761 TAAAGGATAT CAAGGTTCTC CATAGGTTCT TCGAGATAAG CTTAAAGCTG AATTTCCTGT GTGTTTCAGG CATTCACAGA 001840 001841 TAAACTCATT CTCTGTACTT CTAGGGTAGC ATCTTTATGT ATCTATTATG TACCTCTTAT CTATTGTGTT ATCATCTCTG 001920 001921 TTATAGAAGA GCCTTCTGTA GACCATATAG AAAAAGATTA TAGAGGAGGA GAATCTACTG CTGGCAATTG GGAACCGCAA 002000 002001 GGTATACTAA ATAATATATC AACAACTAAT GGCCATCTAA TGCTATGCTG GATATGAACT TTTGGGGCCT CAGGAAAGAA 002080 002081 AAACCAGGAA CTAGTTTCAA TAATGAGGTG TCATGGTTCC CTGTGGCAAA TTTAGAACAC TTATCGTTTG GCAGGACACA 002160 002161 GAGAGGTAGG TGAACATTCC AGGAAAGAAG CAGCTTAGAG AAAATGTGGA GGAAATAATA TGACACTTAG AGAAAAAGGA 002240 002241 AGGTTTATTC TTGTCTTATG TCTTGACCTG TTTCTGAGTG CGAACACAAA CCAGGTGTTT CTGTCTCTTT CTGAGTCACG 002320 002321 TCTGCCCCTG TTCTGGCCCT TCCCCATCTA GAACTGCCAT TATCAGTGGA GTAGTGGGTC CCTGGTCTCC TACAAATCCT 002400 002401 GGGACATTGG ATCCCCAAGC TGTGCCAATA CTGCCTACTG TGCTAGCCTG ACTTCAAGCT CAGGTGAGAG GCACAGAATC 002480 002481 CACACACTTA TTGCCATCCT CTCCTATTTA TCTCTGAGGA TCGACCGGGG ACTGGGATAG AGGAAGGGTG AGCTCCTCAT 002560 002561 TCAGGAAATA GAGGAGTGTT TCCTCTTTAT TTTTGCTGAG TCCTGCAGCC AGGAGGGTAA TACACTCTGA TCCCCTCAGT 002640 002641 CTGAATCTTC TCATTGTCTT ATAGGATTCA AGAAATGGAA GGATGATTCT TGTAAGGAGA AGTTCTCCTT TGTTTGCAAG 002720 002721 TTCAAATACT GGAGGCAATT GTAAAATGGA CGTCTAGAAT TGGTCTACCA GTTACTATGG AGTAAAAGAA TTAAACTGGA 002800 002801 CCATCTCTCT CCATATCAAT CTGGACCATC TCTCCTCTGC TAAATTTGCA TGACTGATCT TTAGTATCTT TACCTACCTC 002880 002881 AATTTCTGGA GCCCTAAACA ATAAAAATAA ACATGTTTCC CCCAT |
Predicted Small Protein
Name | NONHSAT071868_smProtein_1367:1528 |
Length | 54 |
Molecular weight | 5966.8981 |
Aromaticity | 0.132075471698 |
Instability index | 62.4433962264 |
Isoelectric point | 4.86285400391 |
Runs | 9 |
Runs residual | 0.00954901058444 |
Runs probability | 0.0155449567215 |
Amino acid sequence | MLVVSDSIIRDISVLSFFCYILWEGSICLPHFPPSLSAPFSSPTALLPEHEFR |
Secondary structure | LEEELHHHHLLLHHHHHHHHHHHLLLEELLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooo |