NONHSAT072061
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072061 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2316 nt |
Genomic location |
chr2+:86116160..86118475 |
Exon number |
1 |
Exons |
86116160..86118475 |
Genome context |
|
Sequence |
000001 CGGGGTCTGA CGTCACGAGG ACGCGGACGG CCAATCGGAG AGCACGATGC CTccgcggcg gcccccgccc ccgggcgcgc 000080
000081 ggccAGTCAG CCCTGCGGTG CGGTGGGCAT TGCCAGAGCA GGGCGCCCCC TGCAGGGACG CACCCGGGGC GGGGGCCAGG 000160 000161 CTGGGGCGAG CCCCCCTTGG TTCTGGAGAG GAAATGACAT ACAGTTTGTG AAAGCATAAA TATTCGTGAA AATAAGAAAA 000240 000241 TTCAGGAAGG AAACAAAGCT TAAGGCAGTG ATTGATAGGT TATTTCTTGG ACACAGCTGA ACGTATACTG TGCGCCTGCA 000320 000321 ACTTTCCGGT GGTTTCGGAC CGGACTTCAG TGAAGCCAGT GAAGTCGGTC GACTTGCAGA ACTTCCTTTC AGAGGGGCGT 000400 000401 ACACAGCACC GCGGCCGTGT GCCTGTGATC TCCTTCTGAG TTTGAAAAAG AAGATCCTAG ACACCGAGCC AAATATGTTT 000480 000481 GCATAAACCG GGAGACTTGT GGCTCTATTT TGTAACAGCT TGGCGCAGGG CAGCTGGTTT GGAGATGTCT CTGTTCTTCC 000560 000561 CTTGGTGGGG GTGCCGGAAA AAATGTGCTG CCTGGGCGAT CGAGGTTGGG GCAAAAGCGT TGCAAAGGAA AAGGTGGGAG 000640 000641 GACTCTACTT TCACATTTCC CAAAAGAGTT TTACCATAAG ACTATTTCTG GATTGTTCTA ACGTGAGGAT ATTGGGAGCA 000720 000721 TTTTGAAAAT ACTGGAGGAA AAGCTGTCAC TGGGCGATTT AAATCCGGTA AGTTGGCCAA GGCAGAGCAG CTGCTGGGGT 000800 000801 CAGCGACAGC TGACCCTTGC AGCTGAGTAT CTTGCCCTCT TAATCTTGGA GATCAGCCCA AGGCCCATGt gttacaggaa 000880 000881 aggggtcccg atctagaccc caagagaggg ttcttcgatc tcacgcaaga aacaattcag agtaagtcca cagtgcaaag 000960 000961 taaaagcaag tttattaaga aagtaaagtg gtggctgggc acagtggctc acgcgtaatc ccagcacttt gggaggctga 001040 001041 gacggacaga tcacctgatg tcaggagttc aagaccagct ggccaacatg gcaaaacccc gtctctacta gaaatacaaa 001120 001121 tattggccgg gcgtggtggc gcaagcctgt tgtctcagct actcacgggg ctgaggcagg agaatcgctt gaacccggga 001200 001201 ggcagaggct acagtgagcc gagatcgcca ctgcactcca gcagggcatt cctgaaaata agaggaggga catatccaac 001280 001281 taaggtacaa tgcttgtaat gcttgtatat atgggcagat gtcttctgct acaagggttt gtgataaagg attaattttc 001360 001361 cctaattact atattttgca ataatcaata ttattatttt taaagcaaaa ttaggaatgc ctttgttctc cagatatcgg 001440 001441 gatatctgga ctctctcaag tctgggtctg tttagtaagc attattaatt tgttctctta accataaaca cctagaggct 001520 001521 aggaatgcct agctttcagg aaatgcagcc tagcaagtcc cagcctcatt tttctagccc tcactcaaaa tggaggcgct 001600 001601 ctggtttgaa cacttctgac aCATGTGCTT GATGCAACAC TCTTTACCTC TCTTTGTCTC CCCTGTCCTT CCCCTTCTCT 001680 001681 TCCAGATTCC CCTTGTCGGC AAAGCCAGGC GCTGATAGCG TTATGGCTGC CATGAGAGTC AGCAGTATCC CAGCTTCCAA 001760 001761 GGATGGGTGT AAGGTGGGGG TGAGGAAGAA AAGGAACTTG AAGCTGCCTC CTGTCCCAGA ATCACAAGAC ATCTGTTAAG 001840 001841 CCCTTACTAC CTCATTCACT CCACTCACAT TAGGTTGACC CACTTGGGCA GCAAGACAAG CAGGCCTGCA AACTTCCTTT 001920 001921 TCTTCATCAG CCACAGAGAC ATCCTCAGCT ATTATTCTGG ATTAAGGCAG AGATCTCCAA ACAGCAGACT AAGATCAGCC 002000 002001 TCTAGATCTC AAAGCCTTAC TGTTATCTCT CCAAGTCAGT GGCTGATCTC AGAGAAGCTT CTGAATAGTG ACTAGCAAAG 002080 002081 AGTCACTCAG GCTACTTACA AATCCAGGAC AGCAGCGttt tttttttttt cttttttaga gacagattca ctctgtcatc 002160 002161 caagctggag tgcagtggca cgatcttggc tcactgcaac ctccacctcc tgggctcaag caatcctcct acctcagcct 002240 002241 cccaagtagc tggaactaca ggtacccaac accatgccag gctaatttct aattttttgt agagacagca gtctcc |
Predicted Small Protein
Name | NONHSAT072061_smProtein_1622:1714 |
Length | 31 |
Molecular weight | 3405.2376 |
Aromaticity | 0.0666666666667 |
Instability index | 59.9533333333 |
Isoelectric point | 10.8599243164 |
Runs | 5 |
Runs residual | 0.0355855855856 |
Runs probability | 0.0173820879703 |
Amino acid sequence | MCLMQHSLPLFVSPVLPLLFQIPLVGKARR |
Secondary structure | LEELLLLLLLLLLLLLLHHHLLLLLLLLLL |
PRMN | - |
PiMo | - |