NONHSAT072177
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072177 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2084 nt |
Genomic location |
chr2-:88422548..88427560 |
Exon number |
4 |
Exons |
88422548..88424105,88425695..88425867,88426004..88426265,88427470..88427560 |
Genome context |
|
Sequence |
000001 TGAAGAGGGA GCTCTATTGC CACCATGAGT TTCTCCGGCA AGTACCAACT GCAGAGCCAG GAAAACTTTG AAGCCTTCAT 000080
000081 GAAGGCAATC Ggagggacct agcttggaag atcaactctc tggtcaccAG GGGTATGGGG AATGAAATGC TCACACTCCA 000160 000161 AGAGCAAAGT CATCAAAGGA GGAGGGAATG AGGAAGGAGA GTGAGCAAGA ACCAGGGTGC TTACAAGAGG AACGGTTCTT 000240 000241 CAGGCCAGAA GAGTGTCCTT TTTATAAATT GACTGGCAAG ATAGCAGCAG GCCAGGCCAG GTCACTGTCC CTTCCTTTCT 000320 000321 GAGGCCACAG CCGATGCTGC TGACAAGCCC CCAGTCTGCC GGAAGAGCTC ATCCAGAAGG GGAAGGATAT CAAGGGGGTG 000400 000401 TCGGAAATCG TGCAGAATGG GAAGCACTTC AAGTTCACCA TCACCGCTGG GTCCAAAGTG ATCCAAAACG AATTCACGGT 000480 000481 GGGGGAGGAA TGTGAGCTGG AGACAATGAC AGGGGAGAAA GTCAAGACAG TGGTTCAGTT GGAAGGTGAC AATAAACTGG 000560 000561 TGACAACTTT CAAAAACATC AAGTCTGTGA CCGAACTCAA CGGCGACATA ATCACCAATG TAAGTTGGTG GTGCTCTGAG 000640 000641 CGTGTGGCTC CCAGTGCTTG AGGGGAGAGG GGAGGTGAAG CATGGGGAGC GGCTCACATA CCCTAATGCC ACCCCTCCAC 000720 000721 CCTCCAACCC CCAAACTTCT TTCCTGTGGT CAGTATCTGC CAGCACTTAC TGAGGATCCA TCATGTCCCA GGCAGTTTAC 000800 000801 ACACATTATC ACTAATCCTT TCTGCTCAGC GCAACCAACC AGCCACAGAG GCCTCCACCT GCCCTGCATG CCCAGGGTGC 000880 000881 TTCATAAATG CCTTTGCCCA TTTAGCGTTT ATAAAGAGAA TCCCATTCAT GGTCATATTA TGGCAGCTTA CAAGCCTGGC 000960 000961 ACAGTCCAGT TATGCAGTCA GCCTTGGTGC CTGGCTGCCA GCCACATCCT GTACCCTATT TGGGGGTGAA TGGTGCAGTG 001040 001041 TTTCTCCTGC AGGTATGTCC CCCTGACTCT TCTTTGCCCC CAGAATATGC TTTAGGGAGT CACAGACAAC AGAACACTGC 001120 001121 CTCAGGGCGC TGTCATCACT CTATTCAAAT GGAAAAATTC TTAAACTAGA GAGAGTGTGA GCATCAACCA CCCAATGTGC 001200 001201 AGTTTCCACC TCCGCCCCAG CACATTCCCA GGAGAGCAGG GGAGCAGGAG ATGAGCTATC CTGCAGTaag tcctggccaa 001280 001281 cgccctttga taggttccat ctcacctaat cctcctgtct ccttcgaggg aggctggatg agggattcaa tagacaggtt 001360 001361 gacctgtcca agtcatcagc taataaatgt taaatccagg gctcaaaccc aTCAAGCAGC AACTATTGCA TTGCTGCTGA 001440 001441 AACTGAGGGG CTCCTTTTCA CCCTGATGAC ATGGTATGTC ATTCCAGCAG TCTTATTCAA GAGAACTGGC AGGGGTGGAG 001520 001521 GAAACATCCT TAAAAACTCA AAAGCTGATG CATCCACTGT TTTTATATGC TTCACAGCTA TAGGAGGACA ATTATGCACT 001600 001601 ACCCACTGCC TTCCAGGCTG TGtgcctagt tgtgtccatg tacatgtatc cttggtgctc aacatgtatt tggtgcatag 001680 001681 taggtactca atgaaatttT GAGAAATTAG ATTGGGCTGG TTTGGATGGT CTTGCTATAA CAGTCATTGA TGTAGAAAAG 001760 001761 AATTCAGTCA AAGGCAGGAG GACTTTCCAG GTGAGGAGGA GAAGTGACAA AGACTTGGCA TAGGATTTTG GAAAACATTG 001840 001841 CCAACCTTTC CTCCGGTCCT ACAGGAAACC AGACGAATTT TTGAATTGTT TCATATGCCA ACATATTTGG TGCTGTTTTT 001920 001921 TAAGCTTAAT TTTGTTTTTT ATGCTTAATT TTGTTTTTTA CAATACAACA TCAGATGAAC ACTTCATAAT TTCTTTTCTG 002000 002001 GCTTTCAGAC CATGACATTG GGTGACATTG TCTTCAAGAG AATCAGCAAG AGAATTTAAA CAAGTCTGCA TTTCATATTA 002080 002081 TTTT |
Predicted Small Protein
Name | NONHSAT072177_smProtein_1250:1465 |
Length | 72 |
Molecular weight | 7685.7799 |
Aromaticity | 0.056338028169 |
Instability index | 61.0549295775 |
Isoelectric point | 10.2744750977 |
Runs | 9 |
Runs residual | 0.0217939214233 |
Runs probability | 0.0374982825964 |
Amino acid sequence | MSYPAVSPGQRPLIGSISPNPPVSFEGGWMRDSIDRLTCPSHQLINVKSRAQTHQAATIA LLLKLRGSFSP |
Secondary structure | LLLLLLLLLLLLEEEELLLLLLLLLLLLEELLLLLLLLLLLLLEEEELLHHHHHHHHHHH HHHHHHLLLLL |
PRMN | - |
PiMo | - |