NONHSAT072427

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT072427

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6624 nt

Genomic location

chr2-:95533231..95613086

Exon number

8

Exons

95533231..95539050,95539134..95539294,95547017..95547183,95595764..95595918,95596531..95596605,95598678..95598736,95601061..95601119,95612959..95613086

Genome context

Sequence
000001 gtatatatgt aatgccgaag agaggttagg gtttctttag gtttccgtac tttcctgttg agcactgcgg cgcaactcgc 000080
000081 cttgctgcgg ttggtggtgg cgatggagat tgcagcgcgg ctgaagggAA CCTACTGGGT TGGTGACATT TACAAGAGAG 000160
000161 TCTTGAAGAT TTTCCAGAAC GGGAAAGATT TTGGAAGAAC AAAGAGGAAC TACAGAATCA TTGCTTACAT TGACACAATT 000240
000241 GAATGGGAAG CCATCATTCT TTAAAGGGCA ATGACCAAGC AGTACCAGCA GAAATTGAAG TACCAGCAGA AGGCTAAGAA 000320
000321 GGGATCATGG CACAAGTTGC AGTTTCCACC CTGCCCATTG AAGATGAGGA GTCCATGGAA GATGAGGAGT CTGTTGAAGA 000400
000401 CGAGGAGTCC GTTGAAGATG AGTCCGCGGA GAGCAGGATG CTGGTGACAT TGCTCATATC AGCTCTTGAG TCCACGttct 000480
000481 ggaggccaca agtccaaaat caaggtgtgg gcagaaatgc gctccctctg cagactcttg gggaggatcc ttgcttcttc 000560
000561 cagGTCTGCG ACTGTGGTTC CTGCAGCCAC TGGAACCAGC TCTGCACAGC TCAGACCTGA GTGATGAGGA CACAGCTTCG 000640
000641 CAGCTCCTGA ATGTTCCGGA TGAGCTCGGC TTCCTGAGGG AGGAGACGCC CTGAGCACCA GAGCCAGTCC CTGGTGAGGA 000720
000721 TCCCAGGAGG CCCAGCTGCT GCAGGCCTTG GTCAACACCT GAGCAACCAC AAGGAGTTGA ATGCCGGGCC TGAGCTCTGA 000800
000801 CTGTGGCCTT CTGTGGGCTG CTGGGAAGGT CCCTCAGCGG CAGTTCCCAC GCCCCAGGCT TCAGGAGTCA TCGCTGCTGC 000880
000881 TCACTCAGTG CACCTGGGAA CGTTGGCCTG CCCTTGGCCT CTGGACAGCC CCTGAGGACC CAAACTCTGG GGGCCCAGAT 000960
000961 GCCCGCCCAG GCTGCCCCTC AGGGCTCTGT GCTGGGAAAG GCCATCTTCA CACCAAGAAC AGGAGAAGGA CCCTGTGTTT 001040
001041 CTTCTTATTG CCTGGCCAGT TTAATTTGCT GTGTGTAGGA ACAAGCCTTT TCTCTGTGAT TGGGGTCTTT GCCTCAACCA 001120
001121 CTGGGTACTT CCTTGTGTGC CAGGGCCCGG GTCCTGCGCC CCTCTATCCC TGGGTTTGCC TCTCCGTGCA CTGTCAGTGT 001200
001201 CTCCATCAGT TGGCAGGTGC CCTTGTTGCG GGCAGAGAGT TTGCGGGAGC TGCAGGAGTT CTTGAGGCAC TGAGAGAGTG 001280
001281 CAGGGGGAAG GGCCTGCAGA AGGGTAAAGA AGGGAGGAGG GAAGGCATGA GGGGAGGGAG GGACTCAAGG GTTCTTGCCT 001360
001361 GAGCTTGGGG TATGGCAGGA GACCAGCTGC CCCCACCCCA CATCTTTCAC GAATGTCTAC AGGCCTGTAG TGGTTCTCAG 001440
001441 GGAGGCCCCA GGCTCTGAGA GGTCAGAGAA TTCTCCAGAG CCAGCATCTG GGCCAGGACT GAGTTACTCT CTCACCCTGT 001520
001521 GGGGCTGCCC CACAGACAAG CTGGGGTGGA TTGGGAAGTT ATAGGGGACA TGGAGGAGAG GGGACCTGTG GGTGCAGATC 001600
001601 TTTGTGTCCC CGGCTCTGTA TAGGATGAAT GGGAGCAGTG GCTCCCAGCC CACCCCACCT TACCTGTCCA CACCTGCAGT 001680
001681 GCTGGCCCAG ACCTGGGTTT CCACCTTGGG AGCAACTGTC CCAGCGAGGG AGGGTCTCTG GGGAGGTGCC TTGTGGCTTA 001760
001761 GCCCAGGGAG CCCAGGGTCA GGATGACTGT GCCAGGACTC AAAGGGATTA GAGGAGGAGA GGAGAAACAG CTGCTTGGAA 001840
001841 GTCAGGGGTC TTCTGGGGCA AAGCTGCCTC CTGTCACTAA GGGGCCAGAT TTCGGGACTC AGGGGTCTCA CGTGCAGAGG 001920
001921 GCTGGGCTCC CGCGTGCTTG CAGCAGCCAC GTGGCTTGTC CACATGAACT GCGGGGGGGG GGGCTCCTCC TCTCTGCGCC 002000
002001 CACAAATCCC GGCCACCCAA GGGTGCTGGC ACCTTCAGCA GCTCCGTTTC CACATGGTCG CGCACGAGGT TGGGGTGCTC 002080
002081 GCGGCGCTCA CGGCACTGCA GGTTGTCAGT GGTGATGGAG AAGGGCACCT CTGTGGCGTC CAGGGCGCGC TCCAGCCGTT 002160
002161 GCTTCTGGGC CAGGAGCAAG TTGGTCTCCG CAGCCAGCGC CTCCATCTCA CGCTGCAGCT CCGACTTCCA GCTGTGCGTG 002240
002241 TCCTGCAGTC GCTCGCCCAC TGTGCGCGTG GAGTCTTGCT GCGTGCGCTG CGCCAGCGCC TGGGTCTCTG TGGCCAGCTG 002320
002321 CTGGCTCTCG TGCCGCTGCC GCTCCGACTG GTCGCGGTCG GCGAAGGCCT GGTGGTAGCG AGCATAGCAG TTCTGGAACC 002400
002401 ACTCCTCCAG CAGGTACTTG GAGGTGCGGA AGCTGGCGGT GGCCAGGCCG GAGGACGTGT AGGCGCCCGT GTTACGGGCC 002480
002481 ACGTCGTACT CTTTGCAGGG CAGCTCGCAG GGCGGCACTG TCTGCGCCAT GGTGCCTGCC GCCCACCAGG GCCAGGGGAG 002560
002561 TGAGGACTGT GTGTGGTCAG CCGGTTGCGG TCAGCCTAGT GCGGTCAGCG GGGCAGCTCC AACGGCTCAG TCCCAGAGCA 002640
002641 GGACGCGGCT CCCAGTCGCT TGGGTGACAC TGTGTAAACC AAGAGCTTCC TGTTGCCAAG AAACGGGATC TCTTCTCCAG 002720
002721 TAGCTAGGGG AGGGGCATTC AGGGTGGTGG GCAGAACTGC CCTCTTAAAG GGCCAGGCAG CCCCAGCCCC ACCATCCCTG 002800
002801 TCCCCGCCTC GGGGCAATCA ACAGTGGCCA AGGGTTCCTG TCACTTAGAG GATCCTGGGG CCAGCCCGTC TCCAGCCTCT 002880
002881 GAGTCCCACC CTTAGGGTTC AGGGTGTGGG TGGGGACCTA CTGCCCTGGC CCCTTCCTTG GTTCATCCAT TTGTTCCTGG 002960
002961 TTTGCGCTCT GATCCTGTCC TGTGCGGAGC TCCGCGCTCA GGGTGAACAA GACAGGAGAC TCTGCTCAGT TGCAGCCACC 003040
003041 TCAGGGCAGA GGGCTGTGGC TGTCGTGTGG GTGTTGGGTG TGCTGACTGA TAGTGTTACT TGATGCCGTA CAGGTGGCTG 003120
003121 CTCTCCCTGC CCTCCTGGCC CCAACAGCAG CCTGGTAGCA CAGGGAGGGT TCCAGGCCAG GTCCCCTCGG GGGCAGTCTG 003200
003201 AGGCAGTTCC TGCAGGAACT CTGCTCCATT TTCTCCTGCA CCTAGTGCCT GAGAGCCAGG CCCTGGCCTC TGGCCTTCTC 003280
003281 CTCCCAAGTC CAAGCCAGGG TCCCCTCAGG CTGGGCACAG CGGGGAGGGA GTCTGAGTGT GCTCTTCGCT GGGGAGTTGA 003360
003361 ATTCAGCCTC TGGGTAAGTG TCCAGAGTCA GACGCCCAAA TCTGCCCCAC AGGGCGGAGG CAGGTCCTGT GCTGCGGAGG 003440
003441 CTGCCCTCAA AGCCATTCAG GGCCAGGCTG CCTGGCGGAG GCTGGATGGG CAGGAAGCGC CCCAGGACAC ATCGGAGTCC 003520
003521 CCCTAACCTG GGGCCAGGGG AGCCCCAGCC TAGGCGCGAT TCCCCACACG GCCAGCGGAG GGCGACGTTG GTCTGGCACT 003600
003601 GAGAAGCCTG CGGCTCCTGG CTCGGCCTCC CCTCCGTCTG CCTGGCGCAT GCAGTCCTGG GGACCCCCAG CCCCTCCGGC 003680
003681 CTCCTCTTCT CTGAGAGCCC CCCACCAGAA AGTCCTCACT AGGAAGTCCA TACCCTTCCT ACAGCACAGA CCTCTGGGCC 003760
003761 CCTGTTCTct ccaccttcac cccctctccc accacagccc acaccctcac tccAGCCACA GGAGCCGGAG CTCCTCCTGG 003840
003841 GCCATTCCCA CCACCCCGCC CAGGGTCTCT CCAGCCCCAC CATGTGCCGG CCAGTGCCCT CCTCCTGGAC CTGACCTCCC 003920
003921 CCCGTCCTGG CCTCTCCCGC GGCCAGAACC CTCAGTCCAT GCTGCTGTCA CCACGGTGCG CCTGGCCTGA CACAGCCTCC 004000
004001 TGATGGGGCT TTTGAGGACA GCAGCCCGGA GACTTACCCT AACCCAGGCC GAGTCAGAAC CTGTGGCAGG CGGCCTGGGA 004080
004081 ACCTCTTCTT ACTGTCCATC AAAATTGGGA GGTCAGGGGA CCTTCAGGGA CTGGTGTGGT CTGAGAAACA TCCTCGAGCC 004160
004161 TCGCCATGAC TCAGTTTCCC CAGATGGCAG CAGGCTGGAG CCCACACGCA GGGCAGGATG CCAGGCTCCA CCTTTTGTCT 004240
004241 GGAACCTGCA TTCACTGGGC ACCTCTCTTT AGGCAGAGCA GAGCAGAGCT GCCCGTGTTT GTCCCCTGAT CTGTGGCCCC 004320
004321 AGGAGCCCGA GAGACCACCT GAGCCAACGA GAAGGCCTCT GGGCCAGAGC CCAGCTCTGC GAAGTGGGAG ACTTCTCAGC 004400
004401 CTCCACTTCC AGGTGCCCTG AAGTCGTTGG CAGGGGGTGC TGCCTGCTTG GGGCTCCCAG ACTAAGGGAA CACATTCATG 004480
004481 TGGTGACCAC GATAGGCCCT GCAGGCTGAG GCACAGGATT TGACCAAGGA CGCATCAGAG ATAGGAGACT GGGCCCTCAC 004560
004561 TCCTGCCAGC TGCAAACTCC CAAAGCCCCC AGCCCTCTCA TGGGGTGAAG ATGCCCTGAA GGACACTCCA GTGTGCTCCC 004640
004641 ACCTCTGGGT TCTGCCAGCC AGAGAGTGGG ACCCTCAGGC CACATGTGTC TTGCTGGATC TCAGCTTTAG GGACCCATCG 004720
004721 TGCTGGCAGC TCCCTGAGAC CTGGGTCAGG GGGTGTCCAT TAGAGCACCT TGGTCAGGAC CCAGAGATGG GGAGGGCAGT 004800
004801 TGGCATCTCC AGAAAGCAGG AGGTGGGGCA TGGCTCTGTG ACAGACGTCC CTGTGACAGG GAGGATTGGA GGGACAGAGG 004880
004881 GGCGTGCTCA GGGGCGGAGG GGCAGATGAG GCCACCAAAG GGCACCTTGA ACACTGGATG GCCCCAGGAA GGCCCTTGAA 004960
004961 CCCCATCCTG ATTGATCCAG GGCCTGTGAC CTTGGCCCAG ACTGCAGGCC TGGGGACTTG AGTTCCttta gtttcttaag 005040
005041 aaactactat actccttttt ggcatagctg tacgatttta cattcccacc agtaatgtgt gaaagctcta gtttttactc 005120
005121 atgctcctca gcgtttgatg ttttattttt attttagcta ttctgatata tatgtgttag tcattgtggt cttaatttgc 005200
005201 aaatttctaa tgactaatga tatttaacac cttttcttgt tcataattaa ataccatctg tattcctttt cgCATATCAT 005280
005281 CAACACAACC GTGAAAAATC AGAACAAAAT TTTTCAGACG ACTTCAAAAT TTTTAGAACA ATACTCAAGG GAAAAGGTGT 005360
005361 TTATTTAGAA CAATGAAAAC AATGAGACAT TAACTTCCAG GTTAAATAAA GTTGATTGTG TGCATAAAAA TGGTGAAAAT 005440
005441 ATTAGACTTC CTTGGCAAAA GAAGAAAGGG GAAGACTTTA TATTTTCTGA AATAATATTC ATCATTTGTC TTTGGTTTAT 005520
005521 TATGTGTATG ATTTGGAAAA AATGCATCAA AGATACAACC TTCTGGTGTT TGCTTTGATA TTATCCTTGC AAACAGAAAA 005600
005601 GTTGGCACGT TTCTGTATAA AACTGGACAA AGTTGGCCTA GGAATGATGT TACATTGTAC TTTCACTTTA CATCATACTG 005680
005681 TAAGAGTTTA ATAATAGCTA AGGCAGGCGT GTTGATGTGG ACTTACTGTC CCTATTTAAG AGGTGGTGTG AGGTTTAGGA 005760
005761 GAGTTATGTA CCCTTTATCA TAAAACAAAT CTATGAAGCA TTTATATAAA AACCCAGTAT TTCTGGTTTC AAATTCAGTA 005840
005841 CTGTGCCGTC TGCTTGATAG ATTTGTTTGC AGGTTAGAGA CATTTTATTG CATAACTTCC ATGAAGTATC ACAGTTGTAC 005920
005921 TCTTGACTAT GTTTAAATCA CAACAAGACT TTAATCTGCA CTCAGTTCTT TTAACTAAAA TCTTCAGTTT GAATATTAAT 006000
006001 TTCACTTAAA GAACATCCCT AGAAATTTCA GAGAGAGTTT ACTTGCGGAA TACAATTTGC ATTTGCTTTG ACAACTATTA 006080
006081 GTTCACATAT GTAAAATAAG TCTACCTGTC TGTATGCATA ATTAAGATGT AACAGTAGTG TGGTAATGAC TTGTTAATTA 006160
006161 AAGCAATTAG AATGGCAGTG GATCATGGCA CAATTTACCT TAAAAGCCAT GAGCAGACTA CATCACAAGC TATGATACAA 006240
006241 TTAATAGTCA TTAGGTTTAA AGTAGTTTCT GCATATAAAA CCACAAAGCA TATTTTAGCC CTTTAAACAA AAGCTTCATT 006320
006321 CAGTCAATAC TGGTCTTCTT GTAGATGCAT TTATGAAACA AAACCACAAA ACATATAGCT TACCCGCTTC TCAAAACATG 006400
006401 TTGCACAGTA GGTTGAGGGA CTTCTCTACA CCAGGACCTA TTCTTAAAAC CAATAAGTCC TCAGTGAAAA TTATGTATTT 006480
006481 GCCTGGAGTC TCATCTGATG TGTCTGTTGT AGGCAGCTGT GGCAGTGGTG GGTGGTTTAG TGAGATGGAC CCTGTCCACG 006560
006561 TCTGTCCGTC CATCAGTGGG CTAGTGTGTC TCTGGCTGCA CCTGAGAAGG GTCTATAGGA GTTA
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Predicted Small Protein

Name NONHSAT072427_smProtein_326:619
Length 98
Molecular weight 10770.7286
Aromaticity 0.0515463917526
Instability index 65.9463917526
Isoelectric point 3.75592041016
Runs 9
Runs residual 0.0387552500955
Runs probability 0.045722192781
Amino acid sequence MAQVAVSTLPIEDEESMEDEESVEDEESVEDESAESRMLVTLLISALESTFWRPQVQNQG
VGRNALPLQTLGEDPCFFQVCDCGSCSHWNQLCTAQT
Secondary structure LEEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLLL
LLLLLLLLLLLLLLLLEEEEELLLLLLHHHHHHHLLL
PRMN -
PiMo -