NONHSAT072427
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072427 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6624 nt |
Genomic location |
chr2-:95533231..95613086 |
Exon number |
8 |
Exons |
95533231..95539050,95539134..95539294,95547017..95547183,95595764..95595918,95596531..95596605,95598678..95598736,95601061..95601119,95612959..95613086 |
Genome context |
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Sequence |
000001 gtatatatgt aatgccgaag agaggttagg gtttctttag gtttccgtac tttcctgttg agcactgcgg cgcaactcgc 000080
000081 cttgctgcgg ttggtggtgg cgatggagat tgcagcgcgg ctgaagggAA CCTACTGGGT TGGTGACATT TACAAGAGAG 000160 000161 TCTTGAAGAT TTTCCAGAAC GGGAAAGATT TTGGAAGAAC AAAGAGGAAC TACAGAATCA TTGCTTACAT TGACACAATT 000240 000241 GAATGGGAAG CCATCATTCT TTAAAGGGCA ATGACCAAGC AGTACCAGCA GAAATTGAAG TACCAGCAGA AGGCTAAGAA 000320 000321 GGGATCATGG CACAAGTTGC AGTTTCCACC CTGCCCATTG AAGATGAGGA GTCCATGGAA GATGAGGAGT CTGTTGAAGA 000400 000401 CGAGGAGTCC GTTGAAGATG AGTCCGCGGA GAGCAGGATG CTGGTGACAT TGCTCATATC AGCTCTTGAG TCCACGttct 000480 000481 ggaggccaca agtccaaaat caaggtgtgg gcagaaatgc gctccctctg cagactcttg gggaggatcc ttgcttcttc 000560 000561 cagGTCTGCG ACTGTGGTTC CTGCAGCCAC TGGAACCAGC TCTGCACAGC TCAGACCTGA GTGATGAGGA CACAGCTTCG 000640 000641 CAGCTCCTGA ATGTTCCGGA TGAGCTCGGC TTCCTGAGGG AGGAGACGCC CTGAGCACCA GAGCCAGTCC CTGGTGAGGA 000720 000721 TCCCAGGAGG CCCAGCTGCT GCAGGCCTTG GTCAACACCT GAGCAACCAC AAGGAGTTGA ATGCCGGGCC TGAGCTCTGA 000800 000801 CTGTGGCCTT CTGTGGGCTG CTGGGAAGGT CCCTCAGCGG CAGTTCCCAC GCCCCAGGCT TCAGGAGTCA TCGCTGCTGC 000880 000881 TCACTCAGTG CACCTGGGAA CGTTGGCCTG CCCTTGGCCT CTGGACAGCC CCTGAGGACC CAAACTCTGG GGGCCCAGAT 000960 000961 GCCCGCCCAG GCTGCCCCTC AGGGCTCTGT GCTGGGAAAG GCCATCTTCA CACCAAGAAC AGGAGAAGGA CCCTGTGTTT 001040 001041 CTTCTTATTG CCTGGCCAGT TTAATTTGCT GTGTGTAGGA ACAAGCCTTT TCTCTGTGAT TGGGGTCTTT GCCTCAACCA 001120 001121 CTGGGTACTT CCTTGTGTGC CAGGGCCCGG GTCCTGCGCC CCTCTATCCC TGGGTTTGCC TCTCCGTGCA CTGTCAGTGT 001200 001201 CTCCATCAGT TGGCAGGTGC CCTTGTTGCG GGCAGAGAGT TTGCGGGAGC TGCAGGAGTT CTTGAGGCAC TGAGAGAGTG 001280 001281 CAGGGGGAAG GGCCTGCAGA AGGGTAAAGA AGGGAGGAGG GAAGGCATGA GGGGAGGGAG GGACTCAAGG GTTCTTGCCT 001360 001361 GAGCTTGGGG TATGGCAGGA GACCAGCTGC CCCCACCCCA CATCTTTCAC GAATGTCTAC AGGCCTGTAG TGGTTCTCAG 001440 001441 GGAGGCCCCA GGCTCTGAGA GGTCAGAGAA TTCTCCAGAG CCAGCATCTG GGCCAGGACT GAGTTACTCT CTCACCCTGT 001520 001521 GGGGCTGCCC CACAGACAAG CTGGGGTGGA TTGGGAAGTT ATAGGGGACA TGGAGGAGAG GGGACCTGTG GGTGCAGATC 001600 001601 TTTGTGTCCC CGGCTCTGTA TAGGATGAAT GGGAGCAGTG GCTCCCAGCC CACCCCACCT TACCTGTCCA CACCTGCAGT 001680 001681 GCTGGCCCAG ACCTGGGTTT CCACCTTGGG AGCAACTGTC CCAGCGAGGG AGGGTCTCTG GGGAGGTGCC TTGTGGCTTA 001760 001761 GCCCAGGGAG CCCAGGGTCA GGATGACTGT GCCAGGACTC AAAGGGATTA GAGGAGGAGA GGAGAAACAG CTGCTTGGAA 001840 001841 GTCAGGGGTC TTCTGGGGCA AAGCTGCCTC CTGTCACTAA GGGGCCAGAT TTCGGGACTC AGGGGTCTCA CGTGCAGAGG 001920 001921 GCTGGGCTCC CGCGTGCTTG CAGCAGCCAC GTGGCTTGTC CACATGAACT GCGGGGGGGG GGGCTCCTCC TCTCTGCGCC 002000 002001 CACAAATCCC GGCCACCCAA GGGTGCTGGC ACCTTCAGCA GCTCCGTTTC CACATGGTCG CGCACGAGGT TGGGGTGCTC 002080 002081 GCGGCGCTCA CGGCACTGCA GGTTGTCAGT GGTGATGGAG AAGGGCACCT CTGTGGCGTC CAGGGCGCGC TCCAGCCGTT 002160 002161 GCTTCTGGGC CAGGAGCAAG TTGGTCTCCG CAGCCAGCGC CTCCATCTCA CGCTGCAGCT CCGACTTCCA GCTGTGCGTG 002240 002241 TCCTGCAGTC GCTCGCCCAC TGTGCGCGTG GAGTCTTGCT GCGTGCGCTG CGCCAGCGCC TGGGTCTCTG TGGCCAGCTG 002320 002321 CTGGCTCTCG TGCCGCTGCC GCTCCGACTG GTCGCGGTCG GCGAAGGCCT GGTGGTAGCG AGCATAGCAG TTCTGGAACC 002400 002401 ACTCCTCCAG CAGGTACTTG GAGGTGCGGA AGCTGGCGGT GGCCAGGCCG GAGGACGTGT AGGCGCCCGT GTTACGGGCC 002480 002481 ACGTCGTACT CTTTGCAGGG CAGCTCGCAG GGCGGCACTG TCTGCGCCAT GGTGCCTGCC GCCCACCAGG GCCAGGGGAG 002560 002561 TGAGGACTGT GTGTGGTCAG CCGGTTGCGG TCAGCCTAGT GCGGTCAGCG GGGCAGCTCC AACGGCTCAG TCCCAGAGCA 002640 002641 GGACGCGGCT CCCAGTCGCT TGGGTGACAC TGTGTAAACC AAGAGCTTCC TGTTGCCAAG AAACGGGATC TCTTCTCCAG 002720 002721 TAGCTAGGGG AGGGGCATTC AGGGTGGTGG GCAGAACTGC CCTCTTAAAG GGCCAGGCAG CCCCAGCCCC ACCATCCCTG 002800 002801 TCCCCGCCTC GGGGCAATCA ACAGTGGCCA AGGGTTCCTG TCACTTAGAG GATCCTGGGG CCAGCCCGTC TCCAGCCTCT 002880 002881 GAGTCCCACC CTTAGGGTTC AGGGTGTGGG TGGGGACCTA CTGCCCTGGC CCCTTCCTTG GTTCATCCAT TTGTTCCTGG 002960 002961 TTTGCGCTCT GATCCTGTCC TGTGCGGAGC TCCGCGCTCA GGGTGAACAA GACAGGAGAC TCTGCTCAGT TGCAGCCACC 003040 003041 TCAGGGCAGA GGGCTGTGGC TGTCGTGTGG GTGTTGGGTG TGCTGACTGA TAGTGTTACT TGATGCCGTA CAGGTGGCTG 003120 003121 CTCTCCCTGC CCTCCTGGCC CCAACAGCAG CCTGGTAGCA CAGGGAGGGT TCCAGGCCAG GTCCCCTCGG GGGCAGTCTG 003200 003201 AGGCAGTTCC TGCAGGAACT CTGCTCCATT TTCTCCTGCA CCTAGTGCCT GAGAGCCAGG CCCTGGCCTC TGGCCTTCTC 003280 003281 CTCCCAAGTC CAAGCCAGGG TCCCCTCAGG CTGGGCACAG CGGGGAGGGA GTCTGAGTGT GCTCTTCGCT GGGGAGTTGA 003360 003361 ATTCAGCCTC TGGGTAAGTG TCCAGAGTCA GACGCCCAAA TCTGCCCCAC AGGGCGGAGG CAGGTCCTGT GCTGCGGAGG 003440 003441 CTGCCCTCAA AGCCATTCAG GGCCAGGCTG CCTGGCGGAG GCTGGATGGG CAGGAAGCGC CCCAGGACAC ATCGGAGTCC 003520 003521 CCCTAACCTG GGGCCAGGGG AGCCCCAGCC TAGGCGCGAT TCCCCACACG GCCAGCGGAG GGCGACGTTG GTCTGGCACT 003600 003601 GAGAAGCCTG CGGCTCCTGG CTCGGCCTCC CCTCCGTCTG CCTGGCGCAT GCAGTCCTGG GGACCCCCAG CCCCTCCGGC 003680 003681 CTCCTCTTCT CTGAGAGCCC CCCACCAGAA AGTCCTCACT AGGAAGTCCA TACCCTTCCT ACAGCACAGA CCTCTGGGCC 003760 003761 CCTGTTCTct ccaccttcac cccctctccc accacagccc acaccctcac tccAGCCACA GGAGCCGGAG CTCCTCCTGG 003840 003841 GCCATTCCCA CCACCCCGCC CAGGGTCTCT CCAGCCCCAC CATGTGCCGG CCAGTGCCCT CCTCCTGGAC CTGACCTCCC 003920 003921 CCCGTCCTGG CCTCTCCCGC GGCCAGAACC CTCAGTCCAT GCTGCTGTCA CCACGGTGCG CCTGGCCTGA CACAGCCTCC 004000 004001 TGATGGGGCT TTTGAGGACA GCAGCCCGGA GACTTACCCT AACCCAGGCC GAGTCAGAAC CTGTGGCAGG CGGCCTGGGA 004080 004081 ACCTCTTCTT ACTGTCCATC AAAATTGGGA GGTCAGGGGA CCTTCAGGGA CTGGTGTGGT CTGAGAAACA TCCTCGAGCC 004160 004161 TCGCCATGAC TCAGTTTCCC CAGATGGCAG CAGGCTGGAG CCCACACGCA GGGCAGGATG CCAGGCTCCA CCTTTTGTCT 004240 004241 GGAACCTGCA TTCACTGGGC ACCTCTCTTT AGGCAGAGCA GAGCAGAGCT GCCCGTGTTT GTCCCCTGAT CTGTGGCCCC 004320 004321 AGGAGCCCGA GAGACCACCT GAGCCAACGA GAAGGCCTCT GGGCCAGAGC CCAGCTCTGC GAAGTGGGAG ACTTCTCAGC 004400 004401 CTCCACTTCC AGGTGCCCTG AAGTCGTTGG CAGGGGGTGC TGCCTGCTTG GGGCTCCCAG ACTAAGGGAA CACATTCATG 004480 004481 TGGTGACCAC GATAGGCCCT GCAGGCTGAG GCACAGGATT TGACCAAGGA CGCATCAGAG ATAGGAGACT GGGCCCTCAC 004560 004561 TCCTGCCAGC TGCAAACTCC CAAAGCCCCC AGCCCTCTCA TGGGGTGAAG ATGCCCTGAA GGACACTCCA GTGTGCTCCC 004640 004641 ACCTCTGGGT TCTGCCAGCC AGAGAGTGGG ACCCTCAGGC CACATGTGTC TTGCTGGATC TCAGCTTTAG GGACCCATCG 004720 004721 TGCTGGCAGC TCCCTGAGAC CTGGGTCAGG GGGTGTCCAT TAGAGCACCT TGGTCAGGAC CCAGAGATGG GGAGGGCAGT 004800 004801 TGGCATCTCC AGAAAGCAGG AGGTGGGGCA TGGCTCTGTG ACAGACGTCC CTGTGACAGG GAGGATTGGA GGGACAGAGG 004880 004881 GGCGTGCTCA GGGGCGGAGG GGCAGATGAG GCCACCAAAG GGCACCTTGA ACACTGGATG GCCCCAGGAA GGCCCTTGAA 004960 004961 CCCCATCCTG ATTGATCCAG GGCCTGTGAC CTTGGCCCAG ACTGCAGGCC TGGGGACTTG AGTTCCttta gtttcttaag 005040 005041 aaactactat actccttttt ggcatagctg tacgatttta cattcccacc agtaatgtgt gaaagctcta gtttttactc 005120 005121 atgctcctca gcgtttgatg ttttattttt attttagcta ttctgatata tatgtgttag tcattgtggt cttaatttgc 005200 005201 aaatttctaa tgactaatga tatttaacac cttttcttgt tcataattaa ataccatctg tattcctttt cgCATATCAT 005280 005281 CAACACAACC GTGAAAAATC AGAACAAAAT TTTTCAGACG ACTTCAAAAT TTTTAGAACA ATACTCAAGG GAAAAGGTGT 005360 005361 TTATTTAGAA CAATGAAAAC AATGAGACAT TAACTTCCAG GTTAAATAAA GTTGATTGTG TGCATAAAAA TGGTGAAAAT 005440 005441 ATTAGACTTC CTTGGCAAAA GAAGAAAGGG GAAGACTTTA TATTTTCTGA AATAATATTC ATCATTTGTC TTTGGTTTAT 005520 005521 TATGTGTATG ATTTGGAAAA AATGCATCAA AGATACAACC TTCTGGTGTT TGCTTTGATA TTATCCTTGC AAACAGAAAA 005600 005601 GTTGGCACGT TTCTGTATAA AACTGGACAA AGTTGGCCTA GGAATGATGT TACATTGTAC TTTCACTTTA CATCATACTG 005680 005681 TAAGAGTTTA ATAATAGCTA AGGCAGGCGT GTTGATGTGG ACTTACTGTC CCTATTTAAG AGGTGGTGTG AGGTTTAGGA 005760 005761 GAGTTATGTA CCCTTTATCA TAAAACAAAT CTATGAAGCA TTTATATAAA AACCCAGTAT TTCTGGTTTC AAATTCAGTA 005840 005841 CTGTGCCGTC TGCTTGATAG ATTTGTTTGC AGGTTAGAGA CATTTTATTG CATAACTTCC ATGAAGTATC ACAGTTGTAC 005920 005921 TCTTGACTAT GTTTAAATCA CAACAAGACT TTAATCTGCA CTCAGTTCTT TTAACTAAAA TCTTCAGTTT GAATATTAAT 006000 006001 TTCACTTAAA GAACATCCCT AGAAATTTCA GAGAGAGTTT ACTTGCGGAA TACAATTTGC ATTTGCTTTG ACAACTATTA 006080 006081 GTTCACATAT GTAAAATAAG TCTACCTGTC TGTATGCATA ATTAAGATGT AACAGTAGTG TGGTAATGAC TTGTTAATTA 006160 006161 AAGCAATTAG AATGGCAGTG GATCATGGCA CAATTTACCT TAAAAGCCAT GAGCAGACTA CATCACAAGC TATGATACAA 006240 006241 TTAATAGTCA TTAGGTTTAA AGTAGTTTCT GCATATAAAA CCACAAAGCA TATTTTAGCC CTTTAAACAA AAGCTTCATT 006320 006321 CAGTCAATAC TGGTCTTCTT GTAGATGCAT TTATGAAACA AAACCACAAA ACATATAGCT TACCCGCTTC TCAAAACATG 006400 006401 TTGCACAGTA GGTTGAGGGA CTTCTCTACA CCAGGACCTA TTCTTAAAAC CAATAAGTCC TCAGTGAAAA TTATGTATTT 006480 006481 GCCTGGAGTC TCATCTGATG TGTCTGTTGT AGGCAGCTGT GGCAGTGGTG GGTGGTTTAG TGAGATGGAC CCTGTCCACG 006560 006561 TCTGTCCGTC CATCAGTGGG CTAGTGTGTC TCTGGCTGCA CCTGAGAAGG GTCTATAGGA GTTA |
Predicted Small Protein
Name | NONHSAT072427_smProtein_326:619 |
Length | 98 |
Molecular weight | 10770.7286 |
Aromaticity | 0.0515463917526 |
Instability index | 65.9463917526 |
Isoelectric point | 3.75592041016 |
Runs | 9 |
Runs residual | 0.0387552500955 |
Runs probability | 0.045722192781 |
Amino acid sequence | MAQVAVSTLPIEDEESMEDEESVEDEESVEDESAESRMLVTLLISALESTFWRPQVQNQG VGRNALPLQTLGEDPCFFQVCDCGSCSHWNQLCTAQT |
Secondary structure | LEEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLLL LLLLLLLLLLLLLLLLEEEEELLLLLLHHHHHHHLLL |
PRMN | - |
PiMo | - |