NONHSAT072514
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072514 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2879 nt |
Genomic location |
chr2-:96479174..96482417 |
Exon number |
3 |
Exons |
96479174..96479284,96479558..96479705,96479798..96482417 |
Genome context |
|
Sequence |
000001 atgattgaaa taaacacaat tagaaatgac aaagggaatg taattaccac tgaccccaca gaaatagaaa caaccatcag 000080
000081 aaactactgc aaacacttct gtgcatacaa actagaaaac ttcaaagaga tggataaatt cctggacaaa tacaccctcc 000160 000161 cacaactgag ccaggaagaa attgatttgc tgaacagacc aataacaagc tccgaaattg aatcagtaat aaataaccta 000240 000241 ccaatcaaaa aaagcccaga acatgatgga ttcccagcca tattctacta gaagtacaaa gaagagctgg taccattttt 000320 000321 acaggaacta tttgaaaata ttgaggagga ggaactcctc cccaactcat tctatgaggc caacatcatc ttgataccaa 000400 000401 aatctggcac acacacacac acacacacac acacacacac acacacacaa acttcaggcc aatacccttg atgaacatca 000480 000481 atgcaaaaat cctcaacaaa atacgggcaa accaaatcca gcagcacatc aaaaagttaa tccatcatga tcaagtatgc 000560 000561 ttcatcccca ggatgcaagg ttgcctcaac atacacgtca attaatctga ttcatcccat aaacaaaact aaagataaaa 000640 000641 accatgtgat tatctcaata tatgcagaaa aggctttcaa taaaattcaa ggcctctcca tattaaaaac tctaaaaaat 000720 000721 ctgggtattg aggaaacata gctcaaagtg atgagctgtt tttgtaccag tatcatgctg ttttggttac tgtagccctg 000800 000801 tagtatagtt tgaagttggg taacatgatg cctccagctt tgttcttttt gctgaggatt gcttggctat tagggctctt 000880 000881 tttttttttg gttccatatg aattttgaaa tagtttgctc tagttctgtg aggaatgcca ttggtaattt aatagggata 000960 000961 acttgcatct gtaaattact ttgggcagta tagccatttt aatgatgtta attcttccta tccatgagca tgaaatgttt 001040 001041 ttccatttgt ttgtgtcttc tctgatttct ttgagcagtg ttttgtaatt ctcctagaga tctcttagag atctttcacc 001120 001121 tccctggtta gctgtattcc taggtatttt attttttctg tgtgtagcaa ttatgaatgg gattatgttc ttcatttgac 001200 001201 tctctgcttt actgctagga atttttgcac attgattttg tatgctaaga ctttgctaaa gtttatcagc agaaggagct 001280 001281 ttggggctaa gactatgggg ttttctagat atagaatcat gtcatctgta aacagagaca gtttgacttc ctgtctattc 001360 001361 ctctcttccc tcctctattt ggatgccctt ccagttttgc acattcagtg taatgttggc tgtgggtttg ccatggctag 001440 001441 ctctcatcat tttgGCACTT CCGACTAGAA GTGCGAGAGG GGCCAGTGTT GTTGTTACCT GAAAGGTAAG TGCAGCCCAC 001520 001521 AAAAATGCAG TGAAGAAGAA GATATATGCA TATGTTTAAG TTAATACAAT TGAGATACAT TTAGCAGACA GAATCAATAG 001600 001601 AGTTGATGAG TGACTGACTG GATGTGTGGG GAGTTTATAT CACTCCCAGG TTTTTGACTT GGGCAACCGG GCACTCAAGA 001680 001681 AGGAAAAAGA GGATCCAGGG AGAGGAACTT TTCTGAGGAC TGGGGTAGGG CTGAACAGCT GCATTCGAGA CTGGTGGAGG 001760 001761 GTGGGCTGGG CATGGGATGC ACAAATGGAA ATTCCACTGG GTCTGCAGCT CACACATAGG CATGACCAGC ATAGAGATAG 001840 001841 AGAGGCCCCA GTGCTGCTGA GTAACTGTGA TTCCCCAGGT GATGGCATCA GCTGAGAAGG GAAGGAAGCC CATGTGAGGA 001920 001921 CACTGAAGAA GGAGTGAGCA GACAATAAGA AGCCCACAGA AGACAGAGAA GGAACAACTA GAGGGAGAAG CCAAGGCAGG 002000 002001 CATGTGTGAT AACATATAGG AACTGAGGGA GAGGACATTT CAAGATGGAG GGGATGCCAT ACAACAGGAC TATGTGATGG 002080 002081 TTTTTGGCTG TGTCCATAGG AAGTCACAAC AGGCAAGGGA AAGAAACCAG AACCCAGTCA TGGAGTTAAG AAGTGAGTCA 002160 002161 GAGAGGAGAT GGGTAGGGAC AGTGAGGTAA GGCCTCTTTC TAAGGAAGTT TGGCTGAAGG ATAGACTAGC TGGACACATG 002240 002241 CTGGCTGTGT GGGGTAGAGG GAGGAATGAT GGAGGGTAGG AGAGCCTTGA GCCTGCGAGA AGAGTCTCCT AGAATAGAGA 002320 002321 AGCTGAGGTT AAAGTTGTGG AAGACAGTGG GGATAACTGA GTGACAGATA ATCAGGAGAA GAAAAGGAGA TCCAGAATCA 002400 002401 TGACAGAGAG ATGACCTTTG CCAAGAGCAC AGCCATCTTT CACTGTCACA GAGAGGTAGG ACAAAACGAT TGGTGTTCAA 002480 002481 GAATTGGTTT GTAGCACAAT ATTTTAACTA TGTCCTTTAA AAAGTTTCTC CACAGACACT ACCCAAAGCA GTCCTTCACT 002560 002561 ACAGTGGCAG ACAGACCTGA AAATTTTCAT CTGAAGCAGC AGAGTGAACT GCAGAGTCAG GTCACCAACC AGTGTGGAGG 002640 002641 CTAAAAGCGG GCCTCTTTGG GGATTCCAGG TGGAAGTGTT GGACATCTGT AGTATTCCTG GTCTCAAATC ATCCTGATAT 002720 002721 TCTTCATTTT GTTATTCACA TTGGACTAGG GCAAGGAAAT GAGTTCTGCA GGAACAAAGA TCACCACAAC TGGCTCCCCT 002800 002801 TCAACTATGT TAGATGGCAA CTTGCCTTCA GTATGGTGAA ACACATCAGT TAAGACTGGG GTTGTGCATG GCAGGACTT |
Predicted Small Protein
Name | NONHSAT072514_smProtein_470:604 |
Length | 45 |
Molecular weight | 5187.1516 |
Aromaticity | 0.0227272727273 |
Instability index | 48.6272727273 |
Isoelectric point | 10.0602416992 |
Runs | 7 |
Runs residual | 0.00401069518717 |
Runs probability | 0.0439473086532 |
Amino acid sequence | MNINAKILNKIRANQIQQHIKKLIHHDQVCFIPRMQGCLNIHVN |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHLLLLEEEEELLLLLLLEELL |
PRMN | - |
PiMo | - |