NONHSAT072745
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Contents
[hide]Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072745 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1752 nt |
Genomic location |
chr2+:99797674..99813862 |
Exon number |
5 |
Exons |
99797674..99797712,99811214..99811360,99811579..99811652,99812036..99812485,99812821..99813862 |
Genome context |
|
Sequence |
000001 TCGGAGGAAA ATTTCAGGCT GAAGGTTTAG CGGGTGCCGG TGTTTCAGGC CTCACCTGAA GATCATGAAA AATACGGTGG 000080
000081 GGATCCACAG AACCCTCATA AACTGCATAT TGTTACCAGA ATAAAAAGTA CAAGAAGACG TCCATATTGG GAAAAAGATA 000160 000161 TAATAAAGAT GCTTGGATTA GAAAAAGCAC ATACCCCTCA AGTTCACAAG AATATCCCTT CAGTGAATGC AAAATTGAAA 000240 000241 GTAGTTAAGC ATTTGATAAG AATCAAGCCC TTGAAGTTGC CACAAGGACT TCCAGCAGAG GAGAACATGT CTAACACGTG 000320 000321 CCTCAAAAGC ACTGGGGAGT TAGTAGTGCA GTGGCATCTG AAACCTGTGG AGCAGAAAGC ACATGAGTCC TAATGCCCCA 000400 000401 GCAGCTTCCG ATTGGAAAAT GCAAATTGTT TTTATTTAAA GATGGTGAGA AAGTGTTTTC ATTAAAATAT GTTTTCAAAA 000480 000481 CCATTTTCAg gccgggcacg gtggctcacc tgtaatccca gcactttggg aggccaaggc gggcagatca cctgaggtca 000560 000561 agagttcgag accagcctga ccaacatgga gaaaccccca tctctactga aaatacagaa ttagccaggc atggtggcac 000640 000641 atgcctgtaa cccagctact cgggaggctg aagcaggaga atcacttgaa cccgggaggc agaggttgca tggcatgatt 000720 000721 tcagttcact gcagcctcga cctcccaggc tcaagtgatc ctcccacctc agcctccaga gtagctagga ctacaggcag 000800 000801 tgtgccacca catccagcta attttttaaa gttttttcat agagacaggg actcactatg ttgtccaagc tggtctcaaa 000880 000881 ctcctgggtt caagccatcc tcccacctca gcctcccaaa atgctgggat tacaggcatg agccactgta cccagccAAA 000960 000961 ATTGTTTTCT TTTTTAAGTG Aattcaacaa tttctgtgag tggctctttg catgaacact gtgcaaggtg ttggagaaat 001040 001041 ccaaagctga ccaaaacatg gtccccacct tttggagctt acagtctgtt ctggggaaca gagattcagc caaaGTCAAG 001120 001121 AAACACTGGA TGCCAGCTAG ATTATCTGTT CTGTGCTTTG GTGTCTATAA GTACATATGT GGATATGGGT TCATTTTATC 001200 001201 CCTAAACTTA GTACCAAACC AGCATTTAAT ATCTAATTAT AAATCTAATT TGGCCTAAAC TTTATTATTG CACACTGCCT 001280 001281 GAACAAAACC TATTTGTCTC TATGTAAATT TTTTCCTCAT GGAACAAGGG TGTGAAATGA AAATATTTTA GGATTTATTC 001360 001361 AAAAACAGAC TATTCTGTTT TCAGCTTCAG AATTGTTCTT TGAATCCTAA GGAACCTCTG TCAACAGTTG AGGTTGCTGT 001440 001441 TGAAAAGAAA GAAGAAGGAG GCGGAAATCT CTCAGGGAGA ATTATTTCCT TTCTTTTCTA TTTTAGATAC CTGGAGGGGT 001520 001521 GGGGAGAAGT AAGAATTGTA AGGGAGGTTC AGTAGTGGGG AATTCTGTGA CAGCTGATTG AAGATGATGA TGAAGAACCT 001600 001601 CTGCATTCTA GTTACCCTTT GCTTCCCTTC ACCTCTTGTA AAATTTGGCT TGGCAACAAT GACATTGTCA TGCTTATTGT 001680 001681 CCCAATATCC ATCCTGTCGT AGATCTTAAT GTTTTTGATC GTTGCGTTAA AGTGGAAGTG CCACCCACAG TG |
Predicted Small Protein
Name | NONHSAT072745_smProtein_1583:1708 |
Length | 42 |
Molecular weight | 4598.6929 |
Aromaticity | 0.0731707317073 |
Instability index | 85.5390243902 |
Isoelectric point | 9.24627685547 |
Runs | 6 |
Runs residual | 0.0296274128385 |
Runs probability | 0.0264382029088 |
Amino acid sequence | MMMKNLCILVTLCFPSPLVKFGLATMTLSCLLSQYPSCRRS |
Secondary structure | LLHHHHHHHHEELLLLHHHHHHHHHHHHHHHHHLLLLLLLL |
PRMN | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | oooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiii |