NONHSAT072809
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072809 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
561 nt |
Genomic location |
chr2-:101706715..101869328 |
Exon number |
5 |
Exons |
101706715..101706826,101804696..101804790,101807763..101807920,101811698..101811788,101869224..101869328 |
Genome context |
|
Sequence |
000001 GCAAACAAAA CACGTCGGGG AAACCAGACC GCCGCGGAGA GGGACAGCGC CCAGCGAAAG CGAGGCTGAT GGAGCGAAGC 000080
000081 CAGGAAGAGG ATGCGGAGAC gcgggggtct gtctggctgt gtcacccagg ctggcctcca actcctgagc tcaagccatc 000160 000161 ctcctgcctc agccttctga gtagctgaga ctacagACCC ACAGTTGATT AACGTCACCA CTGGATCTGG GAAAAATGGC 000240 000241 TTATGGGCAG TTTCACATCA TAAAATCTTC TTGCTATTAT TAAACAGAAA AAAAACGCTT GTGAGCTCAA AGCAAGTGAG 000320 000321 TGCTGTTCAT GAGGTTGGAG GCGTTTTGCA ATGGTTGTTG TGGAAGATAA AGCCCAGCCT GACATATGCT CTTTCAAAGA 000400 000401 AAGTTCTCAG GAATATCCTG TATATGGCAC CAGACCTCAG ACAATTCAGG TCGCCTGGTC GGCGCTCTGG ATGCAGTGTT 000480 000481 GGATTCCAAT GCACGGGTCG CTCCATTTCG AATTCTGCTT CAAGTTCCCG GCTCCCAGGT TTATTCTCCC ATAGCATGTG 000560 000561 G |
Predicted Small Protein
Name | NONHSAT072809_smProtein_350:553 |
Length | 68 |
Molecular weight | 7851.0677 |
Aromaticity | 0.164179104478 |
Instability index | 51.3985074627 |
Isoelectric point | 6.01092529297 |
Runs | 7 |
Runs residual | 0.0388372274752 |
Runs probability | 0.0625709743357 |
Amino acid sequence | MVVVEDKAQPDICSFKESSQEYPVYGTRPQTIQVAWSALWMQCWIPMHGSLHFEFCFKFP APRFILP |
Secondary structure | LEEEEELLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLLLLLLLLEEEEEELL LLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL LLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiii iiiiiii |