NONHSAT072817
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072817 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2302 nt |
Genomic location |
chr2-:101867043..101869344 |
Exon number |
1 |
Exons |
101867043..101869344 |
Genome context |
|
Sequence |
000001 GTTACACGAC AGCGTCGCAA ACAAAACACG TCGGGGAAAC CAGACCGCCG CGGAGAGGGA CAGCGCCCAG CGAAAGCGAG 000080
000081 GCTGATGGAG CGAAGCCAGG AAGAGGATGC GGAGACgcgg ggtaggcggg gcgaattggc aggaagcggg ggcggggccc 000160 000161 gggaagggag gggaggggcg gggcgaggtc gggctggTGG CGTTCAGGGT TAGGTCTGCC GAGGTCCCGC GGCAGGAGAG 000240 000241 CCCGGGGACT GCATGCGTCT GCGCAGCTGC GAGGTTAAGC CGCCCTTTGG CGGTCCCCAG GACGGTTCCT GGTGCCAGAC 000320 000321 GGTCCCAGTA AGTGCTGTCT ACGTTATTAT TTGGAAGAAT GCACCTCAGA TGTTAACTAT TTTCTTAATA TAACATCCGT 000400 000401 AAGTATTCGT CGTAAAAAGT ATTGTAAATG CAGgccgggc gtggtggcgc gtgcctgtaa tcccagcact ttgagagtcc 000480 000481 taggcgggag ggtcgcttga gcccgggagt cccaggctgc agtgagctgt gatcaccact gcattgcagc ccgggcgctc 000560 000561 tgtctcagaa aCATTTTTTT TAATTTAGTA AATGCAAATA TACCACACAT TTCACataac cacggttaat ttctagtctt 000640 000641 acactcattg cagaaatgga atcatactgc actatgagct tttttgtaca tggttttttc tcttaacatg atttcGAGAA 000720 000721 CATGTCTCCA GTTAATATTC ATTTACAAAA TTGTTTGCTG TGCCACGTTT TACTTAGATT GCCCTAGGGC ACTTATCCTG 000800 000801 GGCActtagc tgtgcattag aaacccacgg ggagacgtta caaataccta gttccacccc cagagatgct gattgagata 000880 000881 ttaataaacc ccacctcttc aggtgagtct gaggtgtagt ctgggctgag aaccacCAGG TGGCATTTCC CAGACTTGCC 000960 000961 CGGTCCCTAA ACCTACAGAA ACGTACGCGT ATTTCGCCAG TGATTACCAC CAGCGATTCT AATTATCTAG TTAAGAGCCA 001040 001041 CCTCAATTCt tttttaaaac atatttttat tttattttat GTGTTTTTGG GGAGAAAGAT ATTTTATGTA AAAAAAATTT 001120 001121 TTTTCATCTT TTTAAAACtt gtatttcagt agttttgggg gtacaggtgg tttttggtta catggataag tttttagtgg 001200 001201 tgatttctga gactttggtg cacccgtcac cagagcagtg tacgctgtac ctgtcaggcc tctgagccca agcctgcaca 001280 001281 tatacatcca catggcctga agtaactgaa gaatcacaaa agaagtgcaa atggctggtt cctgccttaa ctgatgacat 001360 001361 taccttgtga aatcccttct cctggctcag aagctccccc gctgagcacc ttatgacccc cgccccggcc tgccagagaa 001440 001441 caaccccctt tgactgtaat tttccactac ccacccaaat cctataagat ggccccaccc ctctctcact tccctgactc 001520 001521 ttttcagact cagcccgcct gcacccaggt gattaaaaag ctttattgct cacacagagc ctgtttggtg gtctccacac 001600 001601 ggacgcgcgt gacagtaccc aaaatatagt cttttatccc tcagccctgt cccacgtata ccccctccca ccccagagtc 001680 001681 ctcaaagtcc attatatcat tcttatgtct ttgcatcctc ataacttagc tcccacttag aagtgtaata tttggtttGC 001760 001761 TACCTCAAtt cttatgaaaa atttaaggaa gagaaattgc tgggtcaaca ggtgtgatat ctactgaatt ttaaaggctt 001840 001841 cttcaattta ctgctaaatt gcacttcaga aagatcctgc caattaacgt tcctaacagc agCAGATATA ATGTGGTAAC 001920 001921 TTGGGGAACT GATTCAAATT AGCTCAAAAG TACTCTCATA AATTTTTTAT TATAGggcct gggcaaggtg gcttatgcct 002000 002001 gtaatcccag cactttagga gaccgaggca ggtggatcac ttgaggccag gagtttgaga ccagcctggc cgtggtgaaa 002080 002081 ccccgaatct actaaaaata taaaaattgg ccgagcatgg cggctcatgc ctgtaatccc agctacttgg gaggatgagg 002160 002161 cagaagaatg gcttgaacct gggaggtgga ggttgcagtg agccgagatc tcaccactgc actccagcct gggcgacaga 002240 002241 gtgagactgt ctcaaaaaaa aaTTTTTGTT ATTATAATAA ACTGTATTTT GTGCAAGCCA TT |
Predicted Small Protein
Name | NONHSAT072817_smProtein_689:808 |
Length | 40 |
Molecular weight | 4475.4938 |
Aromaticity | 0.128205128205 |
Instability index | 40.9156410256 |
Isoelectric point | 8.48822021484 |
Runs | 10 |
Runs residual | 0.0876696832579 |
Runs probability | 0.00653594771241 |
Amino acid sequence | MVFSLNMISRTCLQLIFIYKIVCCATFYLDCPRALILGT |
Secondary structure | LEELHHHHHHHHHHHHHHHHEEEELEEELLLLHHHHLLL |
PRMN | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | oooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiii |