NONHSAT072950
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072950 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1176 nt |
Genomic location |
chr2-:105424033..105429314 |
Exon number |
3 |
Exons |
105424033..105424301,105428891..105429076,105429167..105429314 |
Genome context |
|
Sequence |
000001 CCATCCTGGA CCCCAGAGCC AGGTGCCGTG AATGGAGGTG CAAATGCTAC TCAGCCCGGG AGAGTTGTTC AATATTAGAT 000080
000081 AACAGAGCCA TGAAATACTA CACCAAAGGG AAAATTTTCT TCCTGACCCC AGCTGGTGAT CAGTTTTTGC CTGGAAGCAG 000160 000161 GGGAGTCTTT GTAATACAAT ACTTGTCAAT GTTGTTGGTT TGGCTGCTAT AAATAGCTAT TTTTTTTGGA GGATGGGAGG 000240 000241 AGTTGGATTT TACTAAACCA TTGGctacag gttaattata catttcataa aaaagcattt cttgtagcca gtctaaattt 000320 000321 gttacgtttt aatcccattT TATATAAGGC TAGAAATATA TGAGCCTCCA GCAGGCCCGT TATTTTTGTC ATTATTTTAT 000400 000401 ACATTGGACC TTCAGCTCTC TATCTCTCTT TTTTTCTTTT TCCTCTCTAT GCATTACTCA CCTCTTAGCT AAATTGCAGA 000480 000481 GGGTCCCAGT TTCATTCATT CTCCCTCACA GGGAAGGCAT TCTCTTCCTC TTCCTCCAGC TGCCTGAAAA TCATATGCGT 000560 000561 GGTTTTTCCT GTTTCCTGCT CTGTAGCTGA CATCAGGGGA GCAACGTGAA CACAGGAAAA TGGAAATCAA CATTTGAAAC 000640 000641 TTTTAAATGG AAGCtttatt ggggttccac atatggaaaa ctgcaaatag cagaagtatg tgactcaata aattattctg 000720 000721 gagtgaccac atcctctaac tgcctcccag gacaagacgg agaatgtgaa caatgctcct gaaggcccct ttccctcaaa 000800 000801 gAATCACTGC AATTGAAGGA AAAATGCTCC ATGTCCCCTC TGCCAGTTGG TGTTTATCAA AGGACAACGG AGGAAGAGAG 000880 000881 ACAAAGTGCC TGGATGTGTG TGTTAATCAA GAGTTGTCAG GACCCTGCCT CTAAAAGAAA GCGCTAAAAT GATGCTTTTG 000960 000961 ACAAGACTTT TCTCAAAGTG GATGCAGTCT aagggttgga aaacaaggcc caatcaggct aggtctgact tgtcgcctgc 001040 001041 ttttgtaaat aaagttttat tggctcacag acacacttat ttgtttctgt attatctatg gctgctttcg cgccacaaca 001120 001121 tggagcagtt gtggaagaga ccatatggcc gacaaagcct aagatattta ctctct |
Predicted Small Protein
Name | NONHSAT072950_smProtein_359:589 |
Length | 77 |
Molecular weight | 9003.5896 |
Aromaticity | 0.184210526316 |
Instability index | 63.5289473684 |
Isoelectric point | 8.90850830078 |
Runs | 13 |
Runs residual | 0.0296430732002 |
Runs probability | 0.0299960594078 |
Amino acid sequence | MSLQQARYFCHYFIHWTFSSLSLFFSFSSLCITHLLAKLQRVPVSFILPHREGILFLFLQ LPENHMRGFSCFLLCS |
Secondary structure | LLHHHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHLLLLEEEEELLLHHHHHHHHH LLHHHLLLLEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHLL LLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTToo oooooooooooooooo |