NONHSAT072984
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072984 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3449 nt |
Genomic location |
chr2-:105950230..105953903 |
Exon number |
1 |
Exons |
105950230..105953903 |
Genome context |
|
Sequence |
000001 ATGCCGGGCT CCTTCTCTCG CTGCTGGTTC GGGTGTTGGG GCCTGGTCCC GCTTGCAAAA GCTCCCACGG ACCAGAGAAA 000080
000081 AGAGGAGGAT GTCAGACGTA GAAACAAATG GCGTGTCAAG TTTCGCAGGA AGAGAGGGAA GAGTGAAGCT CCGGGAGCCA 000160 000161 GCCACGATTA GTCGCGCCTT CTGTGACGTC CAATGGCAGA GGTCAAAGGG ATTCCTGGGG CAACCTCGAG GGAAAGAATT 000240 000241 CTGGCTCCGA GGGCCGGTGT ACAGTGCTTT AAATATGGCA GTGGTTATGT GTGAAATTAT CGTGTTTTTC TGTTTAACCT 000320 000321 GTTTCTTGTC TCTTCATCGC CTTTCTATAT AATGTAAGAC CAGAGGCTTT ATGTAGTGAA TTCCCTGTAA CCCCGGCTGC 000400 000401 TTGGACAGAT AGGTATTCAA GTATTTGTTT CTTGAAGTAA TCCTCTGAAT TAACTTGCTC ACATGTAAAA AATAATAACG 000480 000481 GGCTGGGAAA CGCCAGTAAT AGCCGCCAAA CGTTTGTTAG ACATTTACAG TGTGCCAGGG ACTGCATTTT ACGTGTATTA 000560 000561 TCACATTCCT CAGAACAGCC TAATGAGGTA TATATTACTA GAATGCCTAT TTTTCAGATG AGGAAACTGA TGCATAGAAA 000640 000641 GGATAATTTA CTCAAGAGCG AGGAAGTAGC AAGCATAAAA TCCGAGTACA TTTTTTTCTG CATGTATTAA TAGGTACAAT 000720 000721 GAAGTAACTT TTTAAATTGC TGTAGGTATC AATCATAGTC TTAATTCCCA GTAATTCACT TACTAAGAAA TATTTTCTGC 000800 000801 TTCTCTTTCA TCATTCATGG GAGAGATACA TATCCCTAAA TATTTTGCAC ATTTAAAACT TAAACTTGGG TATGGTGGCT 000880 000881 TATGCCTGTA ATCACGGCGT TTTGGGAGGC TCAGGTGGGA GGATTGCTTG AGTCCAGGAG TTCCAGGCCA GCCTGGGCCA 000960 000961 CATAGTAAGA CCCCGTATCT ACAAAAAATA AAAAAAAAAT TAACCGGGCA TGGTAGTGTC TCTGTAGTAC TAGCTACTCG 001040 001041 GGAGGCTGAG GTGGTAGGAT CACTGGCGCC CAGCAATTCC AGCCTGCAGT TAGGATTACC ACACTGCACT TCAGCCTGAG 001120 001121 CGGCAGAATG GGACCATGTC TGAAAAAATA AATAAAAAAT AAAACTTGCA GGTATGTTCT GAATGTTTAT TGTATGCATC 001200 001201 CTCTATGAGG TATCATTTTA TTGGAAATTA TTGCATTGTC TACAAAAATA TGAAGAACTC TGAAGATGCC AAAAGATAAA 001280 001281 CCGTGAAAGA GTACTAGAAG TGAGCTCCTC AAAAAGATAA AGCTGAGAAG TGTTTCCCAA TTTTTCTTAC TCATTTATGT 001360 001361 ATGTAATACT TTATGTCTAG AAACTGAATT TCAGAGCTGG GAGGGAACTT AAAAGTTAGT CCAGTTCTTT CATGTTAGTG 001440 001441 CCAAGAAAGC TGATCAGAAA GAGATTAAAT GACTTGCCCA AAATTGAATA GTCTTAAATC TGAGCTGAGG CAGGCGTCTG 001520 001521 AATGTCTTAA ATTGGAGTTA AATGTATTAG CGTCATAGTA TTAACATCAT CATATTCCAT ATCTCTCAAA TCTGATTTGA 001600 001601 TTTTCATTAC AATAGAGAAA TAAGTGTGAT TAGTATTATC CCCATTTCCT TCACCGGGAG GCACATTGTT TTAGTATCAA 001680 001681 AAGCAGCTAC CTTGGGAGAA TCCGGGGCTA GAAACCTGAC TTCATTTCAA GTTTTACTCT TGTTGCACCA AAACCTTGGG 001760 001761 TGAGTTAGTT TCTCAGCCTC AGTCCCCTCA TCAGGAAAAT GCTGTGTTAG CACTTTCTGT GAAGAATGAT CAAAGGAGTG 001840 001841 GAGATTATGG AGATTATAAA CACACTTGAC ACAGTAAGTG TTTAAGAACT GGTAGCTGAT TTTTACAAAG TTATGGGTCA 001920 001921 TAGAAGGCAG TTTAGAGAAA AGGGCAGGCT TTGGAGTAGC TCAGTTGTAT TATAACCTTG GCTTCTTTAC TCACCTAGGA 002000 002001 CATACATTCT CTCTTTAGCT GTAGCTTCCT CCCTTCTGAG ATGGAAATTA TAAGCCATCT CACAGTGTTG TGAGGATTGG 002080 002081 AGCTCAAGTG TGTAAAATGC CTCCTCTGTG GGCTCTCCTT GGAGAGTTCT TGTATCCTAT TGATTGTCAT CAAAGGAAAA 002160 002161 AAGTGGCAGG ATGATGGCAT AAGTGGGAAG AACCTTGAGT TTAATAGTCT GAAAAAGTGG TTACAGGTTC TTGCTATGCT 002240 002241 TTTCCTCTCT GTGGTTTTCT GAACCCATCG CCTAACCTGA AGCCTTAAAC TTCATCTGCA AAAATGTTTT GTGGCAGGTA 002320 002321 AGATGTCTTT TTTTTCTTCC AGTACTTCCC AGTTTAAAAC TAAGAGTACT TCCTTGCTTA TAACTAATTC TATTAATATT 002400 002401 ATTCTAGGTG ACTCTGAAGC AGAACTCTTG AGATGGAAGG ATTGTCATCT GAGGAAAAAA AATCAAGATT AAGAGAGGAG 002480 002481 GAACTAGAAT GAGATTCACA TACCGTCTCT CCTCCAAGGG AAGGAGAGAG TGGTGATGCC TGCCCACTCC TTCCTGGGCA 002560 002561 GAACATTTGT AGCATGGAAC ATTGGAGAAT TTGCAGTCTG CTGACTTTCT GATTTAGGAG GTTGATGGGG AGGCCTTATA 002640 002641 ATTTGCATTT CTAACAAGTT CTGAGGTGAT GCTTCAAGTA TGTCCAGGCA GAAGGGCTGC CTCACAGAGA ATTCTGCCAT 002720 002721 ACCACATGGG AATTGAAGTC ACAGACATCT CTAACCCTCA AGCCTGAAAC CAAAAGACTG AAAACCAACA CTACAGTGGA 002800 002801 CAAAGAACAT CTCTGAACTT GTGTGGGGAC CAGTGACACA AGGACCTAAG GTCTCTCTCT TCTCATCTTG GCACTTCAGA 002880 002881 AGTCTCCCCA ATCTTGACAA AGCCCTGGAG AAAGGGCCGG GCCTCCCGTT GATAAGAATA TCACTGCAGA TAAATGGAGG 002960 002961 TTTCAAATTG AAAGAAAGGA GGAGGGCCTC CTGTTGATAA GATTATTGTC ACTGCAGGTA AATGGAGGCT TCAAATAGAA 003040 003041 ATACATTTCA GTTACAGAAA AAAAAATTAT CTTTGTTACA CATTTGAGTT TGCAGGCCTA AGGTTACTCC CGCTACACTA 003120 003121 TCATCTGTAA CCATAACGCA CTCAACATTT TAAGCTAACT ATAAGGATTG TTGCTTCACT CAAAGATCCT GAGGTTTTAT 003200 003201 TCACTAACAT TTTTATTTGG TGACTATAGT TGACAAGAAC AAAGCTGTGG GGAACCAACA AACACTGCAA TGCCTGGCAT 003280 003281 TGTCACCTCA CTAGATTGTG AGTTCCTCTG GGACAGGGTC CGTACATTTT CTTAGAATCC CTCACTTAGC CATTAGCCTG 003360 003361 CACAGTGCTT GTACTTAGTA AGTGCTCAGT AAATGTTTGT GGAATGAATG CATGATGAAC AAAATATATA CTGAGGACTC 003440 003441 TTGGTGTTG |
Predicted Small Protein
Name | NONHSAT072984_smProtein_602:709 |
Length | 36 |
Molecular weight | 4328.1727 |
Aromaticity | 0.142857142857 |
Instability index | 65.6028571429 |
Isoelectric point | 8.97882080078 |
Runs | 6 |
Runs residual | 0.00968523002421 |
Runs probability | 0.0446328681623 |
Amino acid sequence | MPIFQMRKLMHRKDNLLKSEEVASIKSEYIFFCMY |
Secondary structure | LLHHHHHHHHHHLLLLLHHHHHHHHHHHHHEEEEL |
PRMN | - |
PiMo | - |