NONHSAT073162
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT073162 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2334 nt |
Genomic location |
chr2+:110744557..110752858 |
Exon number |
3 |
Exons |
110744557..110744767,110745138..110746379,110751978..110752858 |
Genome context |
|
Sequence |
000001 ACTCTTCTGC GGGAAGGGCT TGGCGTAGAC CGCGCACTGG AAGGCGTGCG CGCAGGTGTG CGTGACCATG TGCTTGAAAC 000080
000081 GGCAGTAGCG CAGCGAGAAG GATCGCCATC ACACGGCGCA CTGGTGCGGC TTCTCCCCCG AGTGGATGAA CATGTGCTTG 000160 000161 GTGTCGTTTT TCCTTGAGCT GAACGTCTTG CAACAGTGGC CGCACGCATA GCTGCCCCAG ATCCCGGAAG AAAATCTCTC 000240 000241 CCACACCACT GTAGTCAGAG AGGCCAGTGG GTGCATGGAA CTCCTCGCAC GCGCTGTCAG CAGCAGCAGT GAGGAAGCCG 000320 000321 GCAGCACAGT CTGGGAAGGA AGGAGGTGCT TGGCTCTCTC CCGGGCCGCC ACCTTCGCCG TCCTCGCCAT CGGTCTCATC 000400 000401 GTCAGTTTCC TCGTCATCGT TGTCACCTCG GTCGTCAGGG GCCGCGGACA GTGAGGGGTA GGCACCAAGC CCCTCGGCTT 000480 000481 TGGCAGGTGT CGGGGGCGCA GGCAGCTGCA AACTCGCGGG CCGGCGCTGC TTACCGCTGT GCGCGGCACC GGGGTGCCCC 000560 000561 GGGGGTGCGC AGCCAGCAGG TGGCGCAGGC GGTGACGCAG CTGCTCAGGT GCGAGTGGCG GGGGCACAGG GGTGGGCAGG 000640 000641 GGCGCGGGTG CAGAGGTGCT CGCGGGTGCA GAGGAGCGCG TGCGATAATC TGCGTGCATT CGTCGATAAC TGTCTATGCG 000720 000721 AAGCACCGAC GCAGCCATGA GTACCTGCGG GGCTTCACTC TGTGCCACAA CGAGCGAACC GCTGTACAGG AGCTCGACTA 000800 000801 GCTGTCGCAC CGTCTGCACA GGCACCACCG AAGGCACACG GATCTCAGAG GGGCCGAGCA GCAGCTTGTC TTGGAAGGAG 000880 000881 GGCGAGCCGA TTGCCAGCCC GCAGCGGTGC GCACGCAGCG AAGCTTCATG AATGCACACA GTCACGTCGC AGAAGTGCCC 000960 000961 ACCCAGCTTC TGCCCATTGA GGGTCTCAAG CAGAGAGCGT GAGAAGTTCT GCAGATGTAT GTGGCGCACA GCCTCTACAG 001040 001041 CCGCCGACTC CGACTCCTCT TCAGGCACCA GGCCTGGCCG TGGCCGCCTT CTCACCGACT CCAAGGCAGC ACTTCCGGGC 001120 001121 GCTTCTCTTT Atttttatac agttttattg agatataatt tacatgctat ccagcccatc tatttcaagt gtaccatgca 001200 001201 aggggtttgt atatattcac agagttgtgt atccatcacc atcgttttag aacattcatc actccagaag aaactacgta 001280 001281 cccatcagca gccactgccc atttccctga tctgccccgc cctaggaaat ccgtaatcac tttcagtcta tggatttgcc 001360 001361 tattctagac cattcatata aatgaagtca cacaacactg ggtcttatgt gactggcttc tatcaaagtt tgcaaggttc 001440 001441 atttatgttc atgGGCTGAC CCCACATTGG ACACCGCTGC ATCCATGTCC ATCACACAAC ACAGCTGCCG TTTCTTCTGC 001520 001521 CTGCTTATGG GAAAGTCCCC TCTTCTCCTC CGTTTTCTTC TCTTCCTGCC CTATCACACC GTGCACTTCT CCCTTTCCTT 001600 001601 AAAGAACCAC CATCAACTTT AGGAGGAGGG AAAGGGGTGG CTCTGGCAGG AAAAGCCAGA ATCCCCTCTA GCCAGCAGAG 001680 001681 AGAGAGAGGA ATGGCTGCAT GTTTTCTCCC CCAGTCCAAG GCACTGGGTC TTGGCTGGGT TGAAGGTTCC AAGCTGCTCT 001760 001761 CCTGCTGTGT CGGTGAGTTC TGGTCAACCT GCAACCTCCT GATATGGCCA TTGCAGTTCA TCGAGTCTTC AGGGACTCCC 001840 001841 CATGGCCTGG AGTACTTTGC CTTGCTTACA CGGGAGAGGA GAATGGATTT ATAGAGAACA TCATCTAAAT CCAACTTGAC 001920 001921 CATTGTGTGG CCACACTTGC TAGATTGCTA TAGTCTAAAT CTAGCATTgt agaaagacgg gggagcttgg agctgcacaa 002000 002001 acccaggtct ggaactggct ccttaccttg gaaggtgaat gatcctgcca ggactcttag cctccctggg tctcaatttc 002080 002081 tttatctgtt tcatgggaat gaggatctct gctgggtggt tgGGTGATGT GGGGGCTGTG TGAAAACAGC TTGTCAATAC 002160 002161 AAGCCAAAAT AGAAATATTT CTCCACAGAG TATGAAGGTC AAATGAGAGA ATACATTTAA ATTAAATGGA AAATTAAAAT 002240 002241 GGTAAAAAAT GCAAAGCTGT ATTGAAAGTT CCGAGCTTCT CTATAAGGAG CTTTTTGACT ATGGAAGAAT CCTGTACTCG 002320 002321 TTCCCCCTAA ATAT |
Predicted Small Protein
Name | NONHSAT073162_smProtein_1484:1621 |
Length | 46 |
Molecular weight | 5356.407 |
Aromaticity | 0.133333333333 |
Instability index | 42.7044444444 |
Isoelectric point | 9.84637451172 |
Runs | 7 |
Runs residual | 0.00669191919192 |
Runs probability | 0.0800085800086 |
Amino acid sequence | MSITQHSCRFFCLLMGKSPLLLRFLLFLPYHTVHFSLSLKNHHQL |
Secondary structure | LLLLHHHHHHHHHHLLLLHHHHHHHHHLLLLLEEEEELLLLLLLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | oooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiii |