NONHSAT073620
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT073620 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2968 nt |
Genomic location |
chr2-:111964138..112101701 |
Exon number |
7 |
Exons |
111964138..111966238,111966333..111966554,111991205..111991316,111997379..111997573,112004962..112005137,112005725..112005822,112101638..112101701 |
Genome context |
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Sequence |
000001 CTCTGAAAGC TAGAAGAAAA GGTGTACTTG CAAGAAACCT CAGGACTTGA GTAACAGCAA CATGACAGGC AGGCCAGAAA 000080
000081 GCAGACCCAG GGAGGATAGC ACATGTCTTC GGCTACACTG GTGAAGGCAT CGTGCCTGCT CCACAGCACA TTTTTATTCA 000160 000161 AGAGATGTGT ACCATGTGAT GGCCAAGGGA GCTTCATCAA TCATGGCATC TCAAGGGAGC TGGAGCAGAT GAGGAGGAGA 000240 000241 TGGAGGTCCC AGGAAGGGCT GTGATCTGCC TGGGGTCCCA CAATGGGAAA CAGGCATGAG CTCTCCACAC TCCCTGTCCA 000320 000321 ATGCTCTTTC CACTACAAAA CAATCCATTT CACAGATGAA GAAACAGACT CAGTGAGCAC GTGATCACTT CTCACAACTA 000400 000401 ATGGAGCCAA GATTCTGTCC TTATGGCTCC AGAGACCTCT TTTTTTTCCC ACTGTACCAC AACACTCACC AGGACTGGAG 000480 000481 TGCCACCTAT GACCTCATTG CATAATGGAT GGCTTGTCCT CAAATGGGCC CGGTCTTGGA CGAGCCTGAG GATGTCTACA 000560 000561 AGTGGAAGAA AAGAAGCCAC TGGAGCAGAA GGTGGGGAGG ATAAAATTTG GAGCAAGATT CTCAAGGAAG CAACAAGATC 000640 000641 CTAAGATCTT GTTCTCACTA GAGAATAATT TCTACATTAT GCCCAGGTTC TTCTGAGCTA TGAAGGGGCC CAGATTTAAG 000720 000721 GGCTATTTTT GACACCCTAA ATGTGCTGAG ACAAGTCATT AAGGTGGTCC TGCCAGGACA CAGCCATCTA AAGCAGCAAT 000800 000801 CTGCTTCTTG CCAGAAAATC TCGTGCCTCT GCAGAGCCTT TTCCAGAATG AACCACACCA TGCTGAGGAA AGGAGAAAGA 000880 000881 GACTACCTAC TGCATTTCTG TCACTCGCTG AAAAGGACAC TCTGTCAGAA AATCTTCTAG CAAACTTCAA AGGGCAAAAT 000960 000961 CACCCCTTGT TACTGATAAA GCCCAGAGAG CTTCAGCAGC TAACATTCCC TGGACAGGGC ACAGCAAGGA TTTGAACCTA 001040 001041 GGTCAGTCTG GCCAGAACAC CCACAAGCTT TCCTTAACTC AGTGTGCTAT CTCCCCACGA CTAGGTCACT ACTGCTTTAT 001120 001121 AATCACCTTT GTAGCCACCA GTGGATTTTG CTCATCAGTA TTTTTCAGGC AATTGATACT TTAGATATTC AGCTGCAAGA 001200 001201 CGTATGCAGT TTTCATTGAC ATCTTTTGGA GAAACTGACA AACCTGGACT TGACTTAATG CCTTTGGAAC CTTCCAAGAT 001280 001281 GTTATATAAC TCTAGATAGA AGGCTGGGCC TCCATGATGT CAGGAATGTT GCATTCTTAT TTCCCCATAG ATAAACCCAT 001360 001361 TTGTCCACAA AGTCAAGGAG TCAGGCAGAG GCCCTTGCCA TGGGGCTTTT TAGGATAAAG CAACAAGCCT GGACTTTGCT 001440 001441 CTACAACAGG GTTTTGCATA GGGAGTGGTA TGACCAGATC CCTCAAGAAA GAAAGCTTAG AGACCAGGCC AGAGTCCACT 001520 001521 GCAGTAGCCC AGTCAAGAGA GGATGGTGAC TTGGACTTGT AGTAGAGCCA GTTAGAATGA AAGAAATTGA CACATTCAGA 001600 001601 AATGGTTTTA GAGATAGAGT CAAACTGGAC CTGATAAAGA ACTAGAGAAG CGGAGTGAGG ATAAAGAGAA GAGCCATGAC 001680 001681 TGACTCGGAA GATTTTGTCT TGAAAAACTT GAGAACTCAA GACAGAGTGA AATAAAATCA CATGTGGGAA AAATCTCCTG 001760 001761 CTTTGTTTTG GACTACTTTG AAGTGAAATG CCTGTTAAGC CTAAGTGGGG TAGGTCATGG CGTACATGAC TGTGGGCTCA 001840 001841 GGATGGATAC AGGCATTCAG GAGTTGTGAG CAAATAGAAC TTAAAGCCAT GAGAGAAGAA GGGATCACCA AGAGAGACAG 001920 001921 TGTGGCATAG AGAAGAAAAG GGGTGGAAGA CGATCCCTGG GCAGAAAAGT CCTTAGAGCA GAGGCAACAG GCATGACCAA 002000 002001 GAAGACTAAG AAAGAACATT CAGTACAGCA GGAGGAGAGC AAAAAATGTG TGGTATTCTA GAAGCAAAGA GAATAAAGGG 002080 002081 CTTCAGGAAG GAGCAGTCAA GTGTGTCAAA TAAGATAAAG ACAGACAAGT CCCCTGGATT GGGTAGGAAT AAAATAACAA 002160 002161 CAGACTGCCA TACAAATGGT TCTATCTACA CCATCTAAAA GAATATAGTT TATTCTCCAT ACATTTAAGA AACACCTGCC 002240 002241 ATATGCCAGG TATCCTTTCA AGCACTGAAA TGCAGATTCA TAAAACATGG TCTCTGCTCT CAAGGAGCTC ACAGTGGTAA 002320 002321 GGAGGAAACA GGCAATAGCG AGTGTTCTCA TTGCATTCGT GACCCCATTG ATCTTGCAAC AGCCCCATGC ATCAGTTATT 002400 002401 GCCATTATAC CATTTTACCG ATAAGGAAAC TGTGGCAGGG AGGGGTCAAG CACCTTGGGT ATTTGACAGC AAAACCAAGG 002480 002481 CTTGGTGGTA TCATAAAACT TCCAAGTAGT AATTCACAAA GGTGACTGGG AAATGGAAGT GACCAGAAAT CTTTGCACTA 002560 002561 TGAGGACAAG TTCATGACCC TGATACATTC TTGTCCAGGT AGTATAGCTC CAGACCAAAT GTCTGCGGCC ACCCACCCAA 002640 002641 AAACTTGTTG GATAAAAATG ACTACACCTA TAGTCAAATG ATTTTTGACA AAGGTGCCAA ACAGTTAGAT AGGAAAAAGA 002720 002721 AAGTTATTTT CAATAAATGT TGCTGGAGCA ACCAGATATC CATATGGAAA AAAAATCTTG ACCACCTACC TCACACCAAA 002800 002801 CACTAATATT AACTTGAGAT GGATCATAAA CCTAAGTCTG AAAACTAATA GTAAAGTTCT TGAGAAGAGA ACATGGGAGA 002880 002881 ATGTCTTCAT GATGTTCAGG TAGGCAAAGA TATTTTAAGA CACAAAAAAG CAATAAGCAT AAAATTTGTA AAGAGGTGAC 002960 002961 TGGGGCTT |
Predicted Small Protein
Name | NONHSAT073620_smProtein_422:643 |
Length | 74 |
Molecular weight | 8113.1663 |
Aromaticity | 0.0821917808219 |
Instability index | 42.6616438356 |
Isoelectric point | 9.85565185547 |
Runs | 13 |
Runs residual | 0.0339372514361 |
Runs probability | 0.0345005639124 |
Amino acid sequence | MAPETSFFSHCTTTLTRTGVPPMTSLHNGWLVLKWARSWTSLRMSTSGRKEATGAEGGED KIWSKILKEATRS |
Secondary structure | LLLLLLEEELLLEELLLLLLLLLLLLLLLLLEEEEHHHHEEEEELLLLLEELLLLLLLLH HHHHHHHHHHHLL |
PRMN | - |
PiMo | - |