NONHSAT074405
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT074405 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1861 nt |
Genomic location |
chr2+:131876944..131883092 |
Exon number |
4 |
Exons |
131876944..131877294,131879256..131879490,131881506..131881575,131881888..131883092 |
Genome context |
|
Sequence |
000001 GAGACACATC TTTCAAAGGT TTTAGGATTC CTCCCAGGAG GCAGCCTGCA GCACATGCTG CTCCGCCTTG CCTGCCTGGT 000080
000081 GATCTGTCCT GTGTGGAGGT ACCCGCTCAG CAGTCCTCCG TCGTGGGGCA TGTTGGCGCG CTTCTGCAGT ATGTGTGATG 000160 000161 TTGCCGCGAG TGTTTATATA TATATCTGTG TTGGTGAACC TCTGCACATA TCTCAGTGAG GCAAATTCCT AGTCATGGTG 000240 000241 AGATTGCTGG GGCAAAGTAT ATGAACTATT AAAGTTTCAA TAGATTTTGT CAAATTTCCC TTTGGAAAGG TTGCATCAGT 000320 000321 TTTCTTTCTG CCATTGTGCT TTCTCCTTGC TGAGTCTTTG TAATTATGTG GCTGAAGAGT TGATCTGAGG CAATGAGTTC 000400 000401 ATCTAAAACC AAAACTTTTG TGTCTCCAAA AGGACTAGAG AAGAGACTCA GTTCTTTTTT TATGGGATTG AGATCCACTT 000480 000481 TCCTAGGCTT ATCTCTGCAA ACCTGTCTTT CATACACTGT CTGCTTATCT CTGAGGCTGT CACTCCAGGT GGGATTCATA 000560 000561 CTGTGTTTTA TTTTTATTTA TTTATTTGAT CTTCCAGGTT CAGGTGGTCC TCCTGACTCA GACTCCCAAG TAGCTGGGAC 000640 000641 TGCTGGCTTG TGTTAGACAT AAAGGGAAGT ACACGAAATG GGATTGTGTG TGTTGGCCAA GAATGGGATG AGATGTACAG 000720 000721 GAACAGAAGG TGTAGTGGGC AGTGAATGGA TGTGAGGAAG GTAAAGAGAT GACCGGAGCT ACAACTGGCC TTTAAGTCCA 000800 000801 CTGCAGGGGT TTTCCCTTCA TGCAGTCAAG GAAATTACTG TTTTATATAC CAAGTTAAAG GAAATTACTG TTTTATATAC 000880 000881 CACGTTAAAT ACCTGGTCCA AGATCACAAA TGAAAGGTTG AATTTGCTCA AGCTGACAGA AGTACGTGAG GTAGTAGGAT 000960 000961 GTGCACAGCA TGGGAGGCCA GGCAGGGCCT GGTCTATATC CTGCTGTGCT CATTTATCCA GTGTATGCAT CAGGAAGGGG 001040 001041 GGAGCCTTCC ACACTGTGGG CTTCTGTGGG AAATGGTAGG AAAGAGTATC TGTGAAAACT CTTAAGGACA AAGAAAAAAA 001120 001121 ACGTGTTTTT TCTTTTTTTT TTTTGGAGAC GGAGTGTTGC TCTGTCCCCC AGGTTGGAGG GCAGTGGTGC GATCTTGGCT 001200 001201 CACTGCAACC TCCACCTCCT GCGTTCAAGC GATTCTCCTG CCTCAGCCTC CCTAGTAGCT GGGATTACAG GTACGAGCCA 001280 001281 CCACGCCCAG CTAATTTTTT GTATTTTTAG AGATGGGATT TCACCATCGT GGCCAGGCTG GTCTCGAACT CCTGGCCTCA 001360 001361 AGTGATCCAT CTGCCTCGGC CTCCCAAAGT GCTGGGATTA CACGCGTGAA CCACCGTGCC TGGCCAAAAT GTGTTTTTTC 001440 001441 AAAAGAGAAA GATATTATTT TTATTTGCGT ATAGAGACTT CACAGTCCAG CATTTTCTGA TCAATCTGGC AATTTAGACA 001520 001521 ATATTTGGAA ATTTAGAAAG TTGAAAAGTT TGAGAGGTTT AAAGTTTAGT ACTGTATGAG GAATTAAATG TTAGATATGT 001600 001601 TTCATTTGCT GAAAAGCAAG CTTTTTAATA GAAACCCTAA CCGGAAAGTG TTGGAACTTC TAAGTTGGTT GGCAGCATTC 001680 001681 TCTGTTGACA GTGTGTGCTG CATGCAGCCT GTTAAAGCAC CAGTTGGCGG GCCCTGTGCT CTGCTTTCCC TTTCATTGTG 001760 001761 AGGGACTGCT TTGGGTAATT CTATACAGGT GTAATTAAGG GGCCAGGGGA AGAGTTCTTT TTGTTTCTGC TGTGAATTAG 001840 001841 AGGACTATGT CCTTGCTCTT T |
Predicted Small Protein
Name | NONHSAT074405_smProtein_392:655 |
Length | 88 |
Molecular weight | 9339.8705 |
Aromaticity | 0.114942528736 |
Instability index | 64.2275862069 |
Isoelectric point | 8.83624267578 |
Runs | 10 |
Runs residual | 0.0233169129721 |
Runs probability | 0.0542925278221 |
Amino acid sequence | MSSSKTKTFVSPKGLEKRLSSFFMGLRSTFLGLSLQTCLSYTVCLSLRLSLQVGFILCFI FIYLFDLPGSGGPPDSDSQVAGTAGLC |
Secondary structure | LLLLLEEEEELLHHHHHHHHHHHHHHHHHHHLLLHHHHHEEEEEEEEEEELLLLEEEEEE EEEEEELLLLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTT TTToooooooooooooooooooooooo |