NONHSAT074905
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT074905 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2159 nt |
Genomic location |
chr2+:150445613..150455210 |
Exon number |
6 |
Exons |
150445613..150445771,150450248..150450573,150450739..150450970,150450977..150450990,150451621..150452446,150454603..150455210 |
Genome context |
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Sequence |
000001 AATCAGCTGC TTCCCCAAAA AGCCAAGGGT ACTTTTAATG GAAAATGATA TTAGAAATCA AGATTTGGAC ATTTGGGATG 000080
000081 TTGTTGCTTC TAGACACTCT CAGCTGACAG AGCAAGGAAA TATTTGTGGA TATGCTAACC TGACTAAATA CGCATATCTG 000160 000161 CTCCATACCT ACCTAACATC TATCTTCTCA AGAACTCTGC CAGGGAAGGA GTAGTTTCTG TGTTTCATAA ACAGACTGAG 000240 000241 ACTCAAAGAG GCTAAGTAAA CTACCTGAAG CCATATATAG CAACACACAA TGACGGATGT GAGATTCAAA CTTGGATTTA 000320 000321 TCTGGCTCCA AAATTTCTAG TTTTTTTTTT TTTTTTTTTC CCACTACAGC AAAACTAAGG AGAAGAGACA GAGGTGAATA 000400 000401 GCTGTCTCTC AGTGGTTATT CTGTTTTCCC TTATCTACAT GTTTTCCTCC TTTCACTCTC TCTTGGTTTG TTCTTATCCT 000480 000481 TCAGAAAAAC ACTAGATCTG AATAACAAAG GATGCATACT TAAGCAAACT AAGGCATATA TAGTTATCAC TAAATGCTCA 000560 000561 ACCTGGAAAG AATACTGGAT TGCAGTCTGC TTTTTCTGTA AAGACAATAG TATTATAAAA CCGAAAGAGA CAACAGGGAA 000640 000641 TATTTCCCAC TCAACTAAGC ATATCTAAAA GCACATTTGA AGTTTGGAGA CAATATTCTG TGTTATTTTA AGAAAAGTAG 000720 000721 CATTATTACC TTCTGTGGTG ATCTAGCTAC ATAAGAACTG GAAATGCCTA GGTTTAAAAT CGGGGTATAA AGCAACCCAG 000800 000801 AGCTTGTTAG ATATGCAAGA TCTCTGGCCC TATCCCCAAA CTACTGTCCC AGAATATGTA TTTTAACAAG GTTGCTAGTG 000880 000881 ACTCATATGC TCAATAATGT TTGAAAAGCC CTGCCCCAGA CTCTTGAATA GGATTGGCCA GGAGGTGGGA AAAGGGATGG 000960 000961 TAGCAGTGGT GCTTGCAATG TACATAGCCC CAGATATATA GAATCAGAAT CTGTAAGAGT GGAGACTTAG GAATCTATGT 001040 001041 TTTAACAAGC TCCTCAGGGA ATTTTTATAA ACACTGCAAT TTGAAGATCA CAGGTAAGAA ATAAAAACAG TTCAGGGGAG 001120 001121 AAGTGCAATA TACACTATGA ACACCAGCTG TCAGTACTCT ACAATTTAAA AATGACCTTG ATGGTTAATA GTGAAAAGAA 001200 001201 TTATTACAAG AACATTTTCT AAATTTGAAA TGTAAAGATC TAGGGAACAT GAGCTCTAAG TTAAACAGAT TTGAATTATC 001280 001281 CTGTGATTTT ATCAAAGATC TCTAGACATA TAAATAGTTT ACAGAGAGTA GTGGTTGGAG ATTTAGAGAT TTTGGGTACA 001360 001361 TGTGAGTAAG TCCATGTCAG AATAATGTCT TACTATACTT GGGAAAATAA AGTGAATGCT TTTGTGGTTT TAAAACCAAA 001440 001441 CTGGACTCTA CAGTTTGAAA GTATGTAAGG CAGGTCAATG ACTCTTTCTA AGAAATCTTT TCATTTTCTT GGCATTATGT 001520 001521 CCGTTACTGG GTTTTTCAGG ACTTAATTTT CTAGAGGGAC CCCGCAGGGC AGAGCGACGT TGCACTGAGG CGATCTGAGC 001600 001601 TGAGCACAGG GGTAAGGATA TATTCCTGGA CTGTGTGCTG CTGTCACCGA GAACATTTGC AAATCTGCTG ACACATTACA 001680 001681 GTGGGAATAT CCCCTGGACG CATGGAAGGC CCAGTGCCCT GTCATTTGAG CAGTGCAGGC ACGTCACCAG CCCATGGGGA 001760 001761 TGTCAGTATT CATGCTGCTC TTTGATATAA AGTTCGCATT TTCTATATGG TTTGATGATG TTTAGTGGGA TCAGTGATGC 001840 001841 CTGTTTGTTA ATTGCTTACA GAAGATTTGG GCTTAAAAAT AAAATCTTGG ATCAGGTAAC ATTCTCTGTT TTAAATTTTA 001920 001921 TTGATATTTC TGAATTCCAA GGAAATTACT TACATATCAG ATGGTCTTTG AAACCTTATT TTTTTCTATT ATTTTTAGTA 002000 002001 TTCTCTGCAC TCTGTCTTAT ATTTCTGCCC TTTCTCCTGC ATAAGTAAAA CAGAAAGATT TAGTTAGCGT TTGAGGATGA 002080 002081 AAATTATCAA GCCTATATTC TCAACAACAA TCTGGGATTT GAGTTAATTT TAATGTCCAA TTTGTGTCCC TCTTGCCCC |
Predicted Small Protein
Name | NONHSAT074905_smProtein_1814:2047 |
Length | 78 |
Molecular weight | 9098.8476 |
Aromaticity | 0.194805194805 |
Instability index | 45.825974026 |
Isoelectric point | 9.13848876953 |
Runs | 11 |
Runs residual | 0.00677583286279 |
Runs probability | 0.0520226108462 |
Amino acid sequence | MMFSGISDACLLIAYRRFGLKNKILDQVTFSVLNFIDISEFQGNYLHIRWSLKPYFFLLF LVFSALCLIFLPFLLHK |
Secondary structure | LLLLLHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHEEHHHHHLLHHHHHHHLLHHHHHHH HHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHH HHHHHHHHHHHHHLLLL |
PiMo | oooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTT TTTTTTTTTTTTToooo |