NONHSAT075258
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT075258 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
9361 nt |
Genomic location |
chr2+:166651171..166660531 |
Exon number |
1 |
Exons |
166651171..166660531 |
Genome context |
|
Sequence |
000001 GTTTCTTCGG GCAGGGTTCA GCAGCTTCTG TCACCAGTTA GGTTTCGTGA GCTTCCTTCC CGTGTAGTCT TGATTTCATC 000080
000081 ACTTGACTCA CTTCAGCGCA GCTAGTGGTT TCCGTTTCTG TACGCGGGCG CTCTGGTAGG GGCGCCTCAC GTCCAAAGGA 000160 000161 GGAGTCTTCT TCCAAAGAAG AGCCTTTGGT ATTTGGCAGA GCCTCGCCAA TTTGGGGCGC ACCTCCCCTT CCTGGGATGC 000240 000241 TCTCAGAAGG CAAACCAATT CCCAGAAGAG AGGGAAAAAC AGCCACAACA GAGAGAACCT TTGCTGTCCC TGTTTGGAAA 000320 000321 GAGATTGGGA TTTCCTGGAG AGGGCTTGCT TCTACTGCAG GTTTGTTTAA AAGCTCAACA TCTATTCTGG AAGAGAACAA 000400 000401 CGCAGACTCC AGGAAGATGG TGGGTTTTGC TGTTTTTAAG ACAAAAAAAA ATTGTTAAAC AGTATTTGTT CCATTTATGA 000480 000481 CACAACTTTC TGTTTCAGCC TTCCTTCTGC TGCTGCAACA AACATTGACA CACCCAAAAC CAGGACTTAA AATGGCCTTT 000560 000561 ATACCTTTCT ATGAACTCAT TTCTTTGGCC CTATCCCAAA GATATCTAGG GATATAAATA GAAAACTAGC TAAAAACTTT 000640 000641 TTGGTGTCGT GTTTAATCAC ATGGTGGTAG GTTTTACTAT GAAGTTTAGT TGTGGCCTTC CTCCTACATT TTGACATGCT 000720 000721 CTTATGGTGC TTATTCACTG TTTTATTAGT GCTATGCGTG ACCTAAAAAT AAGGTTTAAA ATACAGTTTA GTATAGTATC 000800 000801 AACAAGTGTA TCTTTAGTAT TTGACTACTC TAAGACATTG GTTTTAGCAT CCATAGTGCT ATTTTATACT AGGACATCTA 000880 000881 TGAGTTAGGG TTTAAGACTT TAGTAAACTA GGTAGTTCTT TGCTTGTTTT ACATGTCATG GTTATTTTGC GAGCACCAAG 000960 000961 GAACCTCCAT GTATTTGCAA CATTTTAATA TCAGTACCTA CAAGCAATTG CCAAGCTCCC TTTCCCTCCA AAAACAAACA 001040 001041 AACAAAAAAA TAGTTCAGGA GATACTTGTG TGTATTGATA TACTAACTTG GCAGTGTTTT TCCTTAGGTC CAGGTCCAGA 001120 001121 ACTGAAAATA CTAACTACTG AAATTCTCTT CTCCTTCTCC TTCTTCTTCG TTGTGCCACT TTGTCGTTTA CCCCTAACCA 001200 001201 GAGGTTAATG TTAGTCTTTG GAAAATTTGT AAGGTATCCT AAATGTATAA CCAAGAAACC TGTACCCTTT TGCACGCACC 001280 001281 ACCCATCTCT GAATGAAGAG CCAAAGATTG TCAGAGTTTT GATGTCCCAC CAGGCGAAGA GCAACACTTT TCACTGACAA 001360 001361 TCAGGACAGA GCAGATGGAT ATAGAATAAC AATCTGGAAT CCAAGGACTG AGATGCATTG ACAGCAAGAC TAGTAACGTC 001440 001441 AAATAACAAC TGAAAAGAGA AGCTAGGGTA GACCTATTAA AAGAGAGAGC CAGCAAACAG GACCAAAATG CTGGATGAGG 001520 001521 AGTCTAAAAA GAACAGAAGA AACAAAAAAG ATCAGGAGTT ACTAAAATTT GACTGTCAGT TTTACAATGG AGACAGACAA 001600 001601 TTTAAAGAAG GAAGCAGTTT TTCTGAGTGT GGCATTACTT GTGCACGTTG AGTGTCATAT ATATagagag agagaaagag 001680 001681 agagagtgag agagagtgag agagagagag agagagatat cttggggatg agacctgtct aaacacaaaa ttcatttatg 001760 001761 tttcatatac accttataca catagcctta aggtaatttt ataaaacatt gtaaataatt ttatgcatga aacaaagttt 001840 001841 gtgtaaagta cttatgtgtg gaattttcaa cttgtggtgt catgttggtg ctcaaaaagt tttgaatttt ggaacatttc 001920 001921 agattttgga tctgtggatt agggatgctc cacctgTACT ATTTTACACA ACGTTGCTTG TACTATTTCA AAGCATTCTG 002000 002001 AAAGCAAAGT Cttaatatta ataaaaaatt ttCTATGTGA CAATAAAATT AAAATGCTGC AGGCCCAAGA AAAAAATATT 002080 002081 ATCATATTGA AATATTTAAT GCCCCAAATC TAATCAGATG CAGGTTTTTG AAAGTACCAT CCTATTCAAA ATTATGAAAT 002160 002161 AAAGAATTTG TTTCATAAAG AGAAATTAGC ATTTCATCAT AAATAAAATC CAGGAACCTT AGTGTAGACA TGCTTCAGAA 002240 002241 ATAAGCTAAT TTTAATAGTA TATGTTTGAC ATATAATGAC AGTTAAGATA GAAAACTGGG CAGATTTTAC ACAGGAAGGA 002320 002321 AACAAACATT CTCTCTCTCT CTCTCTcaca cacacacacg tacttattac acacacacac acacacacac acacacacac 002400 002401 acGACTAGCC ACAAAATGCT CATTTGCATG GATTTGAAAC AATACTCACT CCTTAATACT TTCTGTTAAC ATTTAAATTa 002480 002481 atgccaagac cagcacctgg cacttagtag gtacttaata aatatgtgtt aaatgaataa atTGACCCAT CAAGTACCAT 002560 002561 AAAAAAAATG CCTAGTGTCT TGAGCAATTT ACAGGTCTAA AGAATGGTTT TACCCAACAG TAATGACAAA TAATCCAAGG 002640 002641 CAGATAAGAA CACTAGACTG GTAATCTGAA TTGCAAAGTT CTAAGAACAA TAGCTACCAG CTTTCACATA CCTACATTTC 002720 002721 AAAAGACACT ACGCAAAACA ACTTACACTC CTAcaaatta ctttacatct ggcttaaata ttctcttcca caaaacaaaa 002800 002801 tagtggtaca agatgatcta caggcttctt tacattctga ttcatataaa ctctatgCCA AGAGAATTGG GCaaataaat 002880 002881 aaataaataa atgaaACCTT CTGGATATAG CAATAATAAT TAATGGGACA GCAAAGATGA AGAAACTGAA ATTATTTAGC 002960 002961 TGAGATCGAA ATTTTAATTC ATAAAAAATA GTTGTAATAT ATAATGTAAC AAGTAAATGT GTAAAGTTAC TAAGCCTAAC 003040 003041 TTTAAACTAT TTTAGTTTGT TAATTGTTTA ATTGTTGGTT ACACAACTTT GCTTTGAAAC ATACTCTAGA AACAGTTTTG 003120 003121 CCTCATGAGG GAACTAGAGC TTTTAGTGAG GATCTCAAAG TCAGACTGAG AGATTTGGCT CAAAGACTGA ACAGACTGGA 003200 003201 ATAATTTCTT CTCAAAGCAG TAAAAGTGTT GAAATGCTAT TGATTCAAGC AGAGAATAGA GGTGGTATCA CAGTGAAGAG 003280 003281 CCACAAACAC GTGGGTATTT TTTAAATAAT GATCCAACAT AATTCTACAT TGTGTTTAAA ATATAGCAAG TTAAAACAGG 003360 003361 GAAAATATAA ATAGGTTATT TTAGTATGAA CTTTTTTGGA CATTGTTTTA TATGATTCTT CCCCCTGTAG AATCTCAGAA 003440 003441 CAATCATCTC AGATTTTCAA AGTGGTTCAC ATACTATGAG GGGTTGACTT AGATTACAAC AAAactatgt cttgctaatc 003520 003521 ttgtattctt agtacttggc acatagtagg cactcaataa atatttgatg aaATGTATTG AATAGAGTGC ATTGTTTCAA 003600 003601 GCTTTTAAGC ATTAGCATAA GAGCAAAAAG AAATGTCATG CTGAGTCAGA ATAATATTCA ATCTAACTGG CTCTAAATTC 003680 003681 TGACAGTGGC ACCAAAGAAT ATTTTGTGGA AAACTATGGT GATAGTCTTG CATGATGTTG ACCTCAGTGA TGTACTCGAG 003760 003761 TATCCCTCAC TCACTCTTTT CCTAAATTGA TTTCTCTTTT TCTGTAACAT GTTTCTTTAA ATTGAAAAGA AATTAATATT 003840 003841 CATTACAGAG AAATCAGAAA ATACACATAA CTGCAAAGAA ACTAGCTTTG AAATACTCAG AATTCCTTAT ACCAAGATGA 003920 003921 ATCAGTGCTA TCAGACCCTT TCTATCATGT ATCTTTGCAG ATTTTTTTTA TTGAAAAAGT TGGCAGGAGG CACGGCATGG 004000 004001 AATGGGGAAC ATAGAGGGAT ACAGAGACAG GTTTGTAAAA TAAAAACTAG ATCATTCTGG GGACTTgttt tgtagccaga 004080 004081 gttttctact tgacatataa ttaaatgtca ataaatttat tttacagtat tattttaatg gctgcctgat atccctttgt 004160 004161 aaggatttaa tctgtcaatt actgttggac aatgaagatt gctcccaaat tttgctattg caaccagtgc tataatgatc 004240 004241 atactCTTCA TCTGTTGAAA CATTTATTAC GATTTTCTTC TAATTGACtt ttattttgtt tttgttttat atagagatgg 004320 004321 gggtttcact atgttgccta ggctgcaatt gaactcctga actcaagcaa tcctcctgtc tcggcctccc aaagtgctgg 004400 004401 gattacacgc atgagccacc aggccaggGA TAtttttgtc ttttgagaca gggtcttgtt ctgttgtcca ggctggatca 004480 004481 cagtggtgca atcatggctc actgcagcct caacctccca ggctcaagtg atccttccac ctcagcctcc tgaatatctc 004560 004561 ggactacagg catgtttcat catgtctggc ttttatttta ttttatttta ttttttggag agatgaggtc ttactatgtt 004640 004641 gcctaggctg ttctcgaact cctagactca agcaatcctc cttcttcagc ctactgtagt gctgggctta taggcaggaa 004720 004721 ccaccatgcc cagccCTGAC TTTTATTAAG CCACATTGTG TCAATTATCC AGATCCTAAA CTATGACAAT GTCATTAGAG 004800 004801 GCATCATATC ACAAAAACAA GAGGTAGAAT ACCTATTAAC AATTTACAAT TTTCTATTGG TAAGAAAAAT AATAAGAATA 004880 004881 TTAATTCTAG CTACCAGACC TTCATACAAA GAACGTTCTA TTCAATGAAC ACCTTATAAT TTTAGAAATA TGGAAATAGA 004960 004961 ATACGTCACT TATTTTAAAA AAAAACTCAG ATCTCTTATT TTCCTCTGAT CATACCACAG TCAGTTTCCC ACCTGTGAAA 005040 005041 GTCTTTGTAT CTTCTAATAT GATTTTCTTC CCCCTCTCCA AATCCCCTCC AGCCCAACTG AAGACCCTAG TCTCCCATGG 005120 005121 AGTCTtgata tggtttggcg gtgtccccac ccaaatctca ccttgaatta taataatccc cacatgtcaa ggattggacc 005200 005201 aggtggagat aattgaatca tggtggtggt tttcctcata ctgctcttgt ggtagtgaat acgtctcatg agatctgatg 005280 005281 gttttataaa ttggagttcc cctacacaag ttcttcttac ctgccaccat gtaagacgtg actttgctcc tcattcgcct 005360 005361 tctgctataa ttgtgaggcc tccccagcca tgtggaactg tgagtcaatt aaaccttttt cctttataag ttacccagtc 005440 005441 ttgggtatgt ctttattagc agcataagaa caagactaat acaAGCCTCC TGGATCAGTT CAAATCACCT TGATATTTCT 005520 005521 TAATTCCAAT GCATTGGCAT AAAGTAAATT TCCTTCCTCC CTTGGCCCTC ACCTCTCTCT TGACTCCAAT AAGGGAGAGT 005600 005601 TGTGGAGAGA TGGTACCTGG GTTTGATATA ATTTGTTGCC AGATAAGTTA TAATAATTTG TTAAGGAATT CAAGCCGTAG 005680 005681 AGGATGAGGA TGCTCTTTTA GCATATTAGG TTTGAGGTAA CAGGCCAAAA GGAATAGCAT TTGGTTATTA AGGTAAAAAG 005760 005761 AGAAATAATT TTTATGCATG TTAGAAGGGG AATTTTGAAG GAAATTACAC TTTTTCTGta tatttatata ttttactttt 005840 005841 tatttaCCAG GAGAAAAGGC ATTTGCTGCC CAAGGTAGAA TCCCATCACC ATACTCCTTT CCTACATCCA ATCACAAAAT 005920 005921 CAGAATATGC CAATTCTCTA TTCCCAAGTA AGTCAACAGA CCCTAAGATT ACATTCCCTT TCTCCCCTCT GCAAAGCTTC 006000 006001 AGGGACAGGA GTCCCTGACA GGCAGCTGAC ATTTGGGGTT GCATACAAAA AGTCAAGTCA TTGCAAGAGA AGGAAGTTTG 006080 006081 TTTCTATTGG AAGAGTTAGT GTACAACATA TAAAAACGGA GTGAGGATGG GGATATTGTA GTAGGGAGGG GGTTAAAGGG 006160 006161 CTTAGAAAAT GATTTTTTTA AAGGTGGACA GGGGAAGAGT AGAAGGCAAA AAAATGTCAT CCATGTGGGA CATCTTCTGA 006240 006241 ACGCCCAAGG AGAATCTTTG GGGATACATT CCCCCCAAGA TTTAAAGAAG TGGCTTCACT CCTGAGAATG TACAGGGAGC 006320 006321 GGAGAAGCTA AACCAGGAGC AACATCCAAT TTCTTTGTCT CTCCTTCTCT TCTCACTGCA AACTCTGTAC AGGTTTGGCA 006400 006401 TAACTATCTA AACTTTCTAG TAAAAATCAT AGCCTTCATG AAGATCCATT GTGTATTTGA TTCACAGAAA GTtggtattg 006480 006481 aattgtaaaa cacggctaca aatttctccc tctccaacag gcgtgtcatt ttggaatgtg tcttgctgct cttctcatca 006560 006561 aaggtaaagt cctcttcttc accttttaac ctagagtagc tgtgcaactt tctttgacca atcaaatatg gtggaagtga 006640 006641 tgttgcgtga cttccagata taagtcttaa agagattttt cactttctgc tttcactctc ttggaatgtt gccctgagat 006720 006721 caccacacca tgaagaagtc tggggcgaaa ggccatgtgg agtgagaggc tcagcttccc agatgatctc actgagcaca 006800 006801 gcccccagcc acctgccagc tcaatgcaac ctggtgatgg acccaagcaa ataccagcag aagaatcacc tggtcaaccc 006880 006881 acagaatcat gagaaatact aatttgttgt tgtcttaagc cagtaagttt tgagAGAGTG TTTTAACTGT TTCACCTAAG 006960 006961 TTTGGTCTCT TAACATGAAC ATAAGCACTT TTTTGCATTT GTACATCCTT TGTACTCTTC CTGTTCATAC CGAGAAAGCT 007040 007041 TTTGCAATGC AAAAGCTCAA ATGTATTGGA ATTTTAGAAG TTTAAGCCTT GAAGGACTCT GTACAAAACC ATGCCAAAAA 007120 007121 CCATATATTT TGAAGAATAT GTTCTCAGTC TGAGCCAGTT TTCTATTTCC ACCTCAAATC TTGATTGGTG CAGACTGGAG 007200 007201 AAAGGAGAAG AGAGTCAGGG GTAAGACCGT GGGTCGGAGG TGGATATCGA CAATGTACCT GAGTAAAAGC CCTGTAGCCT 007280 007281 CTCACCATGT TGGAATACCA TATGGCACAA CTACATGGAC CGCCATTTAC ATAGAGTAGG ATGTTTAGTA CTGCGTCTTG 007360 007361 ACCTTTGAAA CCAGACTGGT GAGAGGACTC ACCAACAAAA GTGAAGCTAG GGTCATAGGC CCTACCTTGG AGATTGGTAA 007440 007441 GACCCCAGAG TTATTCCTTG CCCAATGTTA AGTAAGAACA GAAAACATTT CTAAAGAGGG TCCTGAGGCA GACAGGTCTT 007520 007521 AAGCAGTCCC ACAGCCCTCA TGTGCCCTAG AAAGATGCAG AGCGCCCAGA AGCGGTTTTT CAGTGCAGGT GAGAATGGTT 007600 007601 TAGATccaca tgtttttgta aattagtttt tattggaaga gaggcaaacc catacattta cctgttgtct atggctgctt 007680 007681 tgacactaca atagcagagt tgggtagttg tgacagagat catatggtac acaaagccta aaacatttac tatctggtcc 007760 007761 tttaTTTTTA AAAAGTCCTT ATATTAGATG AAACACAAAG AACTGGTAAA ACTTAAGCCT TGTGTAATAA TACAAAACAA 007840 007841 AAATATACCA TGTAGACCAT AATCAAAGGG CCCATTGTCT TCAGCCGCTG ACATTGGGAC CAGGGTGTAG TGTCAGAACA 007920 007921 TGAAAGCCTG GATACCTACA ATGGCCTAAT TTTCTCATAC AAATGCATCC TACCACTCCC ATCCCATACC TTATGCTAGA 008000 008001 TAGGATCCAT GGAATTAGCT GCATCTCCAG TGAAACAGGA AAAGTCCCTG ATTTTACTGA GATTTAGCTA TTGTCACATG 008080 008081 GTGTAACAGG GATTTAAGAG AAAAAATAAC CTCAGGTATA GACATAGGAA AATAATGTTA GATTAAGTTT CTTATACACC 008160 008161 TGGTTCTGTC TTCAGAAACT GGCACCCACT ATAAAGCCTT CCATAGTGAT AATTATCGCA CAAAATCGAT ACAAAGGAAA 008240 008241 TACCTGCTGA ATGTTCTGCC TCAGTAGGTT TTCCTTTGGT CTTTTACCTT AGAAAACTGC ATGATAGCAT TTTTCTATTA 008320 008321 TTTTGACATT TCATGTAGGA AGCATGTTAT TCACAACTTA TGTTTTATAA AATCTTTTTC TGATGATGAT GATGATGACA 008400 008401 CTTGTTAATT TCCATCTCCT TCCTTCACTG TAAGTTTTTC TATTCCCTGA GACAACTATT TCTCTCACTT GTCCTAAACC 008480 008481 CCAAGGATAC AAGAGATGCA TAGGAAAATA TCTATGAAGT GTGTGGGAGG AGACAACAGG GCAGGGTTCC AGAGGTCTGT 008560 008561 GGTTTATTGC ACGTAAAACA CTGGAAAGTG CTTTGGATGA TAAGGAAGTA GCTTGTTGTC CTTTGCAATG GCCTGACATT 008640 008641 CTTACACTGA GAAAATCTTA CTCCCCACTT TGAGCTGGGA TGTGGGAGCT GGGAGGAcat ttactgagta ttaactctgt 008720 008721 gccaggaatt attcctacat tatctcattt agtctccgga aaaccctacg taacaggtga gaagacctca gtgacaagct 008800 008801 caaagatgca tagctaaaga gctgaaatgt aaaagcaggt ctgccagact caaaaaccca tgctctataa actacatcaT 008880 008881 AGAAGTTGTA AAATAATTTT ACCTTGAATC CAAGGGTGAA TAATTTGTCA TGGTTAGCTT GCCCTTTGGC ATTCATAAAC 008960 008961 AATTTCTACT GTCCCAGTTT TTGTTCCATT CATATAGGAG TAACATGTGG AAGTATTAAG CAATAGAAGG CTTTGTTTTC 009040 009041 ATGTATAAAT TTTTACGATA TTTTCAAATA TAATAAAGCC AAAATTGTTA ATTTCACTTC ATGTAGAGAT TCCTTCAAAT 009120 009121 ATAAGATGCT ATGAAACAGT GTCATACCAA AAAGCAAACA CACTGATTTC TATAATCAAA ACATTGAGGA ACACAGGAAA 009200 009201 CTCTAGATAA CTCAGAGGAA AAAGGGAGTA CAAAATCGGG TTGACACAAT GCTTCATTTA AGAATAGGAA CATTGTTTGT 009280 009281 TCATTTGGGT ACTTTATAAC TTTAAGTATA ATGAGGTTTC TTTAAAAAAT TGTAACAATT TTGGTATAAT TGTATAATAA 009360 009361 C |
Predicted Small Protein
Name | NONHSAT075258_smProtein_932:1207 |
Length | 92 |
Molecular weight | 10531.3378 |
Aromaticity | 0.131868131868 |
Instability index | 56.1945054945 |
Isoelectric point | 8.43536376953 |
Runs | 13 |
Runs residual | 0.00938644688645 |
Runs probability | 0.056425203484 |
Amino acid sequence | MSWLFCEHQGTSMYLQHFNISTYKQLPSSLSLQKQTNKKIVQEILVCIDILTWQCFSLGP GPELKILTTEILFSFSFFFVVPLCRLPLTRG |
Secondary structure | LLEEEELLLLLEEEEEEELEEEELLLLLLLLHHHHHLHHHHHHHHHHHHHHHHHHHHLLL LLLEEEEEEEEEEEEEEEEEEELLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo oooooTTTTTTTTTTTTTTTTTTiiiiiiii |